Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Experimental Liver Cirrhosis | | ISO | ZBTB4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25380136 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Experimental Liver Cirrhosis | | ISO | ZBTB4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25380136 | |
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# | Reference Title | Reference Citation |
1. | On how mammalian transcription factors recognize methylated DNA. | Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16. |
2. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
3. | MGDs mouse GO annotations | MGD data from the GO Consortium |
4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:12477932 | PMID:12904583 | PMID:15368895 | PMID:15618518 | PMID:16141072 | PMID:16141073 | PMID:18287559 | PMID:18799693 |
PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:22008794 | PMID:23251453 | PMID:24194600 | PMID:27626380 | PMID:27815388 | PMID:28700664 | PMID:32325033 | PMID:34351428 |
Zbtb4 (Mus musculus - house mouse) |
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ZBTB4 (Homo sapiens - human) |
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Zbtb4 (Rattus norvegicus - Norway rat) |
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Zbtb4 (Chinchilla lanigera - long-tailed chinchilla) |
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ZBTB4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ZBTB4 (Canis lupus familiaris - dog) |
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Zbtb4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ZBTB4 (Sus scrofa - pig) |
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ZBTB4 (Chlorocebus sabaeus - green monkey) |
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Zbtb4 (Heterocephalus glaber - naked mole-rat) |
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Variants in Zbtb4
472 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_001363178 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_029348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534389 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534390 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534393 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534394 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011249293 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AK009517 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK020335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK034066 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK147212 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK163593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK173196 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL603707 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC112421 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC113187 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BE943927 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CA325272 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ106077 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000108638 ⟹ ENSMUSP00000104278 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108639 ⟹ ENSMUSP00000104279 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108640 ⟹ ENSMUSP00000104280 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108642 ⟹ ENSMUSP00000104282 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000132528 ⟹ ENSMUSP00000121694 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000153943 ⟹ ENSMUSP00000118027 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000156932 ⟹ ENSMUSP00000115687 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001363178 ⟹ NP_001350107 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_029348 ⟹ NP_083624 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534389 ⟹ XP_006534452 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534390 ⟹ XP_006534453 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534391 ⟹ XP_006534454 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534393 ⟹ XP_006534456 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534394 ⟹ XP_006534457 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011249293 ⟹ XP_011247595 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001350107 | (Get FASTA) | NCBI Sequence Viewer |
NP_083624 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534452 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534453 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534454 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534456 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534457 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011247595 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI12422 | (Get FASTA) | NCBI Sequence Viewer |
AAI13188 | (Get FASTA) | NCBI Sequence Viewer | |
BAB26335 | (Get FASTA) | NCBI Sequence Viewer | |
BAD32474 | (Get FASTA) | NCBI Sequence Viewer | |
BAE27769 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000104278.2 | ||
ENSMUSP00000104279 | |||
ENSMUSP00000104279.2 | |||
ENSMUSP00000104280 | |||
ENSMUSP00000104280.2 | |||
ENSMUSP00000104282.2 | |||
ENSMUSP00000115687.2 | |||
ENSMUSP00000118027.2 | |||
ENSMUSP00000121694.2 | |||
GenBank Protein | Q5F293 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_083624 ⟸ NM_029348 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006534453 ⟸ XM_006534390 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006534457 ⟸ XM_006534394 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006534454 ⟸ XM_006534391 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006534456 ⟸ XM_006534393 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006534452 ⟸ XM_006534389 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011247595 ⟸ XM_011249293 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot), Q5F293 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001350107 ⟸ NM_001363178 |
- UniProtKB: | Q5F293 (UniProtKB/Swiss-Prot), Q3UHT8 (UniProtKB/Swiss-Prot), Q69ZH0 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | ENSMUSP00000121694 ⟸ ENSMUST00000132528 |
RefSeq Acc Id: | ENSMUSP00000104279 ⟸ ENSMUST00000108639 |
RefSeq Acc Id: | ENSMUSP00000104280 ⟸ ENSMUST00000108640 |
RefSeq Acc Id: | ENSMUSP00000104282 ⟸ ENSMUST00000108642 |
RefSeq Acc Id: | ENSMUSP00000104278 ⟸ ENSMUST00000108638 |
RefSeq Acc Id: | ENSMUSP00000118027 ⟸ ENSMUST00000153943 |
RefSeq Acc Id: | ENSMUSP00000115687 ⟸ ENSMUST00000156932 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5F293-F1-model_v2 | AlphaFold | Q5F293 | 1-982 | view protein structure |
RGD ID: | 6822486 | ||||||||
Promoter ID: | MM_KWN:8116 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Lung, MEF_B4, MEF_B6 | ||||||||
Transcripts: | ENSMUST00000100979, ENSMUST00000108642, NM_029348, OTTMUST00000013403, OTTMUST00000013404, OTTMUST00000061219, UC007JRM.1 | ||||||||
Position: |
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RGD ID: | 6822487 | ||||||||
Promoter ID: | MM_KWN:8117 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, Spleen | ||||||||
Transcripts: | ENSMUST00000092965, ENSMUST00000100978, UC007JRO.1, UC007JRP.1 | ||||||||
Position: |
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RGD ID: | 8675216 | ||||||||
Promoter ID: | EPDNEW_M15639 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Zbtb4_1 | ||||||||
Description: | Mus musculus zinc finger and BTB domain containing 4 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1922830 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000018750 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000108638.2 | UniProtKB/TrEMBL |
ENSMUST00000108639 | ENTREZGENE | |
ENSMUST00000108639.8 | UniProtKB/Swiss-Prot | |
ENSMUST00000108640 | ENTREZGENE | |
ENSMUST00000108640.8 | UniProtKB/Swiss-Prot | |
ENSMUST00000108642.8 | UniProtKB/TrEMBL | |
ENSMUST00000132528.8 | UniProtKB/TrEMBL | |
ENSMUST00000153943.2 | UniProtKB/TrEMBL | |
ENSMUST00000156932.8 | UniProtKB/TrEMBL | |
Gene3D-CATH | Classic Zinc Finger | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | BTB/POZ_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SKP1/BTB/POZ_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_C2H2_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_C2H2_type | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:75580 | UniProtKB/Swiss-Prot |
MGD | MGI:1922830 | ENTREZGENE |
NCBI Gene | 75580 | ENTREZGENE |
PANTHER | AGAP004733-PA | UniProtKB/TrEMBL |
AGAP004733-PA | UniProtKB/TrEMBL | |
GM08392P | UniProtKB/TrEMBL | |
ZINC FINGER AND BTB DOMAIN-CONTAINING 4 | UniProtKB/Swiss-Prot | |
ZINC FINGER PROTEIN | UniProtKB/Swiss-Prot | |
ZINC FINGER PROTEIN | UniProtKB/TrEMBL | |
Pfam | BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
zf-C2H2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Zbtb4 | PhenoGen |
PROSITE | BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ZINC_FINGER_C2H2_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZINC_FINGER_C2H2_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ZnF_C2H2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF54695 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF57667 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | B0QZJ2_MOUSE | UniProtKB/TrEMBL |
B0QZJ3_MOUSE | UniProtKB/TrEMBL | |
Q14DI5_MOUSE | UniProtKB/TrEMBL | |
Q3UHT8 | ENTREZGENE | |
Q5F293 | ENTREZGENE | |
Q5F295_MOUSE | UniProtKB/TrEMBL | |
Q5F296_MOUSE | UniProtKB/TrEMBL | |
Q69ZH0 | ENTREZGENE | |
Q9D774_MOUSE | UniProtKB/TrEMBL | |
ZBTB4_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q3UHT8 | UniProtKB/Swiss-Prot |
Q69ZH0 | UniProtKB/Swiss-Prot |