Nr1i3 (nuclear receptor subfamily 1, group I, member 3) - Rat Genome Database
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Gene: Nr1i3 (nuclear receptor subfamily 1, group I, member 3) Mus musculus
Analyze
Symbol: Nr1i3
Name: nuclear receptor subfamily 1, group I, member 3
RGD ID: 1552629
MGI Page MGI
Description: Is expressed in genitourinary system; heart; and hemolymphoid system. Orthologous to human NR1I3 (nuclear receptor subfamily 1 group I member 3); INTERACTS WITH (+)-artemisinin; (-)-anisomycin; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA209988; AI551208; C; CA; CAR; CAR-beta; Care2; constitutive androstane receptor; constitutively transactivates RAREs; ESTM3; ESTM32; MB67; mC; MGC107281; nuclear receptor subfamily 1 group I member 3; orphan nuclear receptor MB67
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,041,503 - 171,046,414 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,041,539 - 171,048,270 (+)Ensembl
GRCm381171,213,934 - 171,218,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,213,970 - 171,220,701 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,144,101 - 173,148,975 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,050,645 - 173,055,519 (+)NCBImm8
Celera1173,662,106 - 173,666,983 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinin  (EXP,ISO)
(-)-anisomycin  (EXP,ISO)
(E)-azobenzene  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(4-hydroxyphenyl)-2-(4-methoxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dihydrostilbene  (ISO)
1,3-Diphenylpropane  (ISO)
1,4-dichlorobenzene  (EXP)
1-\{2-[(4-chlorobenzyl)sulfanyl]-2-(2,4-dichlorophenyl)ethyl\}-1H-imidazole  (ISO)
1-Amino-2,4-dibromoanthraquinone  (EXP)
1-benzofuran  (EXP)
1-benzylpiperazine  (ISO)
1-Hydroxypyrene  (ISO)
1-naphthol  (ISO)
1-naphthyl isothiocyanate  (ISO)
1-tert-Butoxy-2-propanol  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2'-Dihydroxy-4-methoxybenzophenone  (ISO)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (EXP,ISO)
2,3',5-trichlorobiphenyl  (ISO)
2,3,3',4,4',5-Hexachlorobiphenyl  (EXP)
2,3,4,3',4'-Pentachlorobiphenyl  (EXP)
2,3,4,4'-tetrachlorobiphenyl  (ISO)
2,3,4,5-Tetrachloro-4'-biphenylol  (ISO)
2,3,4,5-tetrachlorobiphenyl  (ISO)
2,3,5,6-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4'-dichlorobiphenyl  (ISO)
2,4,4',6-tetrachlorobiphenyl  (ISO)
2,4-Dihydroxybenzophenone  (ISO)
2,4-dinitrotoluene  (ISO)
2,5-dichlorobiphenyl  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-(tert-butylimino)-5-phenyl-3-(propan-2-yl)-1,3,5-thiadiazinan-4-one  (ISO)
2-chlorobiphenyl  (ISO)
2-Hydroxy-2',3',4',5,5'-pentachlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
2-tert-butylhydroquinone  (ISO)
2-tert-Butylphenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (EXP)
3,6-diaminoacridine  (ISO)
3-chlorobiphenyl  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-ethylphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-nitrophenol  (EXP)
4-nonylphenol  (EXP,ISO)
4-octylphenol  (ISO)
4-tert-butylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5,6,7,8-tetrahydro-2-naphthol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP,ISO)
5alpha-androst-16-en-3alpha-ol  (EXP)
5alpha-pregnane-3,20-dione  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (EXP,ISO)
6-propyl-2-thiouracil  (EXP,ISO)
8-(4-chlorophenylthio)-cAMP  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (EXP,ISO)
acenaphthene  (ISO)
acetamide  (ISO)
acetic acid [2-[[(5-nitro-2-thiazolyl)amino]-oxomethyl]phenyl] ester  (ISO)
acifluorfen  (EXP)
aclonifen  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (ISO)
alachlor  (ISO)
aldehydo-D-glucose  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
allethrin  (ISO)
allyl isothiocyanate  (EXP,ISO)
alpha-naphthoflavone  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
androst-4-ene-3,17-dione  (EXP)
androstane  (EXP,ISO)
androstane-3,17-diol  (EXP)
anthracene  (ISO)
arsenite(3-)  (EXP)
artemether  (ISO)
artemotil  (ISO)
aspartame  (EXP)
atazanavir sulfate  (ISO)
atorvastatin calcium  (EXP,ISO)
azobenzene  (ISO)
baicalein  (ISO)
benfuracarb  (EXP,ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzophenone  (ISO)
Benzyl parahydroxybenzoate  (ISO)
berberine  (ISO)
bergomottin  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bezafibrate  (ISO)
bilirubin IXalpha  (ISO)
bioresmethrin  (ISO)
biphenyl  (ISO)
biphenyl-2-ol  (ISO)
biphenyl-4-ol  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol A dimethacrylate  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Bromophos-ethyl  (ISO)
bromothymol blue  (ISO)
bromuconazole  (ISO)
bupirimate  (ISO)
buprofezin  (ISO)
bupropion  (ISO)
Butamifos  (ISO)
butylated hydroxyanisole  (EXP)
Butylbenzyl phthalate  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP)
calcipotriol  (ISO)
captan  (EXP)
carbamazepine  (EXP,ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
carbosulfan  (ISO)
cefuroxime  (EXP)
cerivastatin  (EXP,ISO)
chenodeoxycholic acid  (EXP,ISO)
Chlomethoxyfen  (ISO)
chlormidazole  (ISO)
chlornitrofen  (ISO)
chlorpromazine  (EXP,ISO)
chlorpyrifos  (EXP,ISO)
chlorpyrifos-methyl  (ISO)
cholesterol  (EXP,ISO)
chromium(6+)  (EXP)
chrysin  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cimetidine  (ISO)
ciprofibrate  (EXP,ISO)
clemizole  (ISO)
clofibrate  (EXP,ISO)
clopidogrel  (ISO)
clotrimazole  (EXP,ISO)
cobalt atom  (EXP)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
crotamiton  (ISO)
cyclobutanes  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (EXP,ISO)
cyproconazole  (EXP,ISO)
cyproterone acetate  (EXP)
D-glucose  (ISO)
DDD  (ISO)
DDE  (EXP,ISO)
DDT  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
deoxycholic acid  (EXP,ISO)
dexamethasone  (EXP,ISO)
Di-n-hexyl phthalate  (ISO)
Diallyl sulfide  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
Dichlofenthion  (ISO)
diclofenac  (ISO)
dicofol  (ISO)
Dicyclohexyl phthalate  (ISO)
dieldrin  (EXP,ISO)
dienestrol  (ISO)
diethyl phthalate  (ISO)
diethylstilbestrol  (ISO)
diiodine  (EXP)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
Dimethametryn  (ISO)
Dimethyl phthalate  (ISO)
dimethyl sulfoxide  (EXP)
dioxygen  (ISO)
dipentyl phthalate  (ISO)
Diphenamid  (ISO)
diphenhydramine  (ISO)
diphenyl ether  (ISO)
dipropyl phthalate  (ISO)
doxorubicin  (EXP,ISO)
doxylamine  (ISO)
drometrizole  (ISO)
edifenphos  (ISO)
efavirenz  (ISO)
ellagic acid  (EXP,ISO)
endosulfan  (EXP,ISO)
endrin  (ISO)
enilconazole  (EXP)
enzacamene  (ISO)
EPN  (ISO)
epoxiconazole  (EXP)
erlotinib hydrochloride  (ISO)
estrone  (EXP,ISO)
ethanol  (EXP,ISO)
ethion  (ISO)
etofenprox  (ISO)
etoposide  (ISO)
everolimus  (EXP)
fenofibrate  (EXP,ISO)
fenoxycarb  (ISO)
fenvalerate  (ISO)
fipronil  (EXP)
flavanone  (ISO)
flavone  (ISO)
flavonoids  (ISO)
fluazifop-butyl  (ISO)
fluconazole  (EXP)
fluoranthene  (ISO)
fluorene  (ISO)
fluvastatin  (EXP,ISO)
folpet  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
furathiocarb  (ISO)
galangin  (EXP,ISO)
gamma-hexachlorocyclohexane  (ISO)
gemfibrozil  (EXP)
Germacrone  (EXP)
glafenine  (ISO)
glucose  (ISO)
glutathione  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycogen  (ISO)
guggulsterone  (EXP)
GW 4064  (ISO)
GW 7647  (ISO)
heptachlor  (ISO)
Heptachlor epoxide  (ISO)
herbicide  (ISO)
hexachlorobenzene  (ISO)
hexestrol  (ISO)
imidazoles  (EXP,ISO)
imperatorin  (ISO)
indole-3-methanol  (ISO)
iprobenfos  (ISO)
isofenphos  (ISO)
isoniazide  (EXP)
isopimpinellin  (EXP)
isoxazoles  (ISO)
kaempferol  (ISO)
ketoconazole  (EXP,ISO)
kojic acid  (ISO)
L-ethionine  (ISO)
lactacystin  (ISO)
Lasiocarpine  (ISO)
leflunomide  (ISO)
leptophos  (ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (EXP)
loperamide  (ISO)
malathion  (EXP,ISO)
MC-4379  (ISO)
Meclizine  (EXP,ISO)
metformin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP,ISO)
metoprolol  (EXP)
metyrapone  (EXP,ISO)
miconazole  (ISO)
midazolam  (EXP)
mifepristone  (ISO)
Mitotane  (ISO)
molinate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzyl phthalate  (EXP,ISO)
monocrotophos  (ISO)
monoethyl phthalate  (EXP,ISO)
monosodium L-glutamate  (EXP)
N,N-dimethyl-3-phenyl-3-(2-pyridinyl)-1-propanamine  (ISO)
N-(1-naphthyl)ethylenediamine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene-1,5-diamine  (EXP)
nefazodone  (ISO)
neticonazole  (ISO)
nevirapine  (ISO)
niclosamide  (ISO)
nitrapyrin  (EXP)
nitrofen  (ISO)
nonan-1-ol  (ISO)
Nonylphenol  (EXP)
O-methyleugenol  (ISO)
Octachlorostyrene  (EXP,ISO)
octamethylcyclotetrasiloxane  (ISO)
oleanolic acid  (EXP)
oleic acid  (ISO)
oltipraz  (EXP)
omeprazole  (EXP,ISO)
orlistat  (ISO)
ortho-Aminoazotoluene  (EXP)
Oxadiazon  (EXP,ISO)
oxazepam  (EXP)
oxolane  (EXP)
oxybenzone  (ISO)
oxycodone  (ISO)
p-menthan-3-ol  (EXP)
p-tert-Amylphenol  (ISO)
Padimate O  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (EXP)
paraquat  (ISO)
parathion  (EXP,ISO)
PCB138  (ISO)
pencycuron  (ISO)
pendimethalin  (ISO)
pentachloronitrobenzene  (EXP)
pentobarbital  (EXP)
perfluorodecanoic acid  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP,ISO)
phenacetin  (EXP)
phenanthrene  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenolphthalein  (ISO)
phenols  (ISO)
phenothrin  (ISO)
Phenoxybenzamine  (ISO)
phenthoate  (EXP,ISO)
phenylhydrazine  (EXP)
phenytoin  (EXP,ISO)
phosalone  (ISO)
piperonyl butoxide  (EXP)
Piperophos  (ISO)
pirinixic acid  (EXP,ISO)
PK-11195  (ISO)
pregnenolone  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
prochloraz  (ISO)
profenofos  (ISO)
progesterone  (EXP,ISO)
propiconazole  (EXP,ISO)
propylparaben  (ISO)
propyzamide  (EXP)
prothiofos  (ISO)
protoporphyrin  (EXP)
pterostilbene  (ISO)
pyrene  (EXP,ISO)
pyriproxyfen  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
reserpine  (EXP,ISO)
resmethrin  (ISO)
resveratrol  (EXP,ISO)
retinyl acetate  (EXP)
rifampicin  (EXP,ISO)
romidepsin  (ISO)
rotenone  (ISO)
senecionine  (EXP)
silicon dioxide  (EXP)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium cholate  (EXP)
sodium dichromate  (EXP)
stilbene oxide  (EXP)
stilbenoid  (ISO)
Sudan III  (ISO)
sulconazole  (ISO)
sulfoxaflor  (EXP)
tamoxifen  (EXP)
Tanshinone I  (ISO)
taurocholic acid  (EXP)
tebuconazole  (EXP,ISO)
teriflunomide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP,ISO)
Tetrachlorobisphenol A  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
thiacloprid  (EXP)
thioacetamide  (ISO)
Thiobencarb  (ISO)
thiophanate-methyl  (EXP)
thyroxine  (EXP)
tiracizine  (ISO)
titanium dioxide  (EXP)
tolclofos-methyl  (ISO)
toluene  (ISO)
toxaphene  (EXP)
TRAM-34  (ISO)
triadimefon  (EXP)
triazoles  (EXP,ISO)
tribufos  (EXP)
Tributyltin oxide  (EXP)
triclocarban  (EXP,ISO)
triclosan  (EXP,ISO)
trifloxystrobin  (ISO)
trifluralin  (ISO)
trifluridine  (ISO)
triphenyl phosphate  (EXP,ISO)
triphenylmethane  (ISO)
Tris(2,3-dibromopropyl) phosphate  (EXP)
troglitazone  (ISO)
tunicamycin  (EXP)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vatalanib  (ISO)
vinclozolin  (ISO)
voriconazole  (EXP)
zearalenone  (ISO)
ziram  (EXP)
Zoxazolamine  (EXP)

References

Additional References at PubMed
PMID:8603043   PMID:8650544   PMID:8889548   PMID:9295294   PMID:10349636   PMID:10462436   PMID:11005856   PMID:11039937   PMID:11042159   PMID:11057673   PMID:11076861   PMID:11217851  
PMID:11752199   PMID:11891224   PMID:12000748   PMID:12049174   PMID:12054576   PMID:12181440   PMID:12376703   PMID:12464260   PMID:12477932   PMID:12482595   PMID:12554751   PMID:12644704  
PMID:12805272   PMID:12881517   PMID:12885400   PMID:12923173   PMID:12948398   PMID:14561088   PMID:14742670   PMID:14963109   PMID:14988430   PMID:15004031   PMID:15151997   PMID:15272053  
PMID:15340055   PMID:15358766   PMID:15492232   PMID:15564320   PMID:15591315   PMID:15610065   PMID:15610734   PMID:15619241   PMID:15684063   PMID:15764585   PMID:15831521   PMID:15905360  
PMID:15953603   PMID:16141072   PMID:16141073   PMID:16219912   PMID:16310787   PMID:16449384   PMID:16492670   PMID:16498401   PMID:16606610   PMID:16614213   PMID:16623664   PMID:16825189  
PMID:16950832   PMID:16971476   PMID:16973756   PMID:17118917   PMID:17314319   PMID:17341620   PMID:17355985   PMID:17521389   PMID:17567731   PMID:17596880   PMID:17605299   PMID:17904126  
PMID:17950690   PMID:17962186   PMID:18187584   PMID:18287559   PMID:18362160   PMID:18441373   PMID:18648086   PMID:18677425   PMID:18703564   PMID:18778245   PMID:18794335   PMID:18798339  
PMID:18941143   PMID:19041682   PMID:19433268   PMID:19489075   PMID:19542321   PMID:19617349   PMID:19686701   PMID:19850644   PMID:19850873   PMID:19858220   PMID:20059953   PMID:20185760  
PMID:20197307   PMID:20211142   PMID:20403969   PMID:20404936   PMID:20932939   PMID:21145854   PMID:21173431   PMID:21220114   PMID:21267068   PMID:21296199   PMID:21335546   PMID:21424122  
PMID:21519326   PMID:21628639   PMID:21672546   PMID:21677750   PMID:21698271   PMID:21705713   PMID:21778422   PMID:21826054   PMID:21827731   PMID:21872825   PMID:21873423   PMID:21873635  
PMID:22488010   PMID:22496397   PMID:22503787   PMID:22653878   PMID:22698814   PMID:22761658   PMID:22815988   PMID:23091169   PMID:23152187   PMID:23291559   PMID:23626729   PMID:23652202  
PMID:23652203   PMID:23721867   PMID:24114688   PMID:24498295   PMID:24690595   PMID:24789201   PMID:24824808   PMID:24863967   PMID:24952961   PMID:25052003   PMID:25155144   PMID:25209997  
PMID:25404284   PMID:25542016   PMID:25656644   PMID:25661872   PMID:26115596   PMID:26171734   PMID:26363009   PMID:26407237   PMID:26612838   PMID:26928356   PMID:26984780   PMID:27007446  
PMID:27080131   PMID:27113289   PMID:27180240   PMID:27240521   PMID:27325701   PMID:27426490   PMID:27434302   PMID:27530923   PMID:27531557   PMID:27853109   PMID:27889186   PMID:28181583  
PMID:28265001   PMID:28283178   PMID:28350814   PMID:28393244   PMID:28422158   PMID:28751364   PMID:28756207   PMID:28903501   PMID:28947831   PMID:29142166   PMID:29351922   PMID:29716964  
PMID:29718219   PMID:29890134   PMID:29996089   PMID:30102401   PMID:30336042   PMID:30573465   PMID:30593543   PMID:30910785   PMID:31875848   PMID:32193417   PMID:32339513  


Genomics

Comparative Map Data
Nr1i3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,041,503 - 171,046,414 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,041,539 - 171,048,270 (+)Ensembl
GRCm381171,213,934 - 171,218,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,213,970 - 171,220,701 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,144,101 - 173,148,975 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,050,645 - 173,055,519 (+)NCBImm8
Celera1173,662,106 - 173,666,983 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.21NCBI
NR1I3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,229,666 - 161,238,244 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1161,229,666 - 161,238,302 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,229,666 - 161,238,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,199,459 - 161,207,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,466,080 - 159,474,624 (-)NCBINCBI36hg18NCBI36
Build 341158,012,527 - 158,021,028NCBI
Celera1134,266,598 - 134,275,155 (-)NCBI
Cytogenetic Map1q23.3NCBI
HuRef1132,556,384 - 132,564,950 (-)NCBIHuRef
CHM1_11162,595,690 - 162,604,231 (-)NCBICHM1_1
Nr1i3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21383,632,940 - 83,638,193 (+)NCBI
Rnor_6.0 Ensembl1389,586,283 - 89,591,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01389,585,072 - 89,591,278 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01394,211,961 - 94,218,143 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,104,241 - 87,108,563 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11387,292,773 - 87,297,730 (+)NCBI
Celera1383,264,145 - 83,269,088 (+)NCBICelera
Cytogenetic Map13q24NCBI
Nr1i3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546812,985,105 - 13,002,850 (-)NCBIChiLan1.0ChiLan1.0
NR1I3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,553,938 - 140,562,799 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,553,951 - 140,562,799 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01136,642,126 - 136,651,074 (-)NCBIMhudiblu_PPA_v0panPan3
NR1I3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3821,253,089 - 21,258,827 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13821,252,874 - 21,257,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nr1i3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936903527,838 - 533,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1I3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,226,690 - 89,236,450 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,226,314 - 89,231,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,082,997 - 97,088,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR1I3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,724,843 - 2,752,999 (+)NCBI
ChlSab1.1 Ensembl202,744,908 - 2,756,658 (+)Ensembl
Nr1i3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794141,316 - 158,059 (+)NCBI

Position Markers
AI551208  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,219,237 - 171,219,381UniSTSGRCm38
MGSCv371173,149,368 - 173,149,512UniSTSGRCm37
Celera1173,667,376 - 173,667,520UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
Whitehead/MRC_RH12123.31UniSTS
Nr1i3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
cM Map192.6UniSTS
AA209988  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,218,676 - 171,218,758UniSTSGRCm38
MGSCv371173,148,807 - 173,148,889UniSTSGRCm37
Celera1173,666,815 - 173,666,897UniSTS
Cytogenetic Map1H3UniSTS
cM Map193.3UniSTS
Nr1i3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156774467176435127Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1163149528186261999Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164315658190802075Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167758517191493284Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167929168189571420Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302037Nktcn1_mnatural killer T cell numbers 1 (mouse)Not determined1168358674171804689Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
4142065Bmd5b_mbone mineral density 5b (mouse)Not determined169007542171938066Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169211172174628870Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169211172177550021Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169310000179820000Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
1302201Alcw1_malcohol withdrawal 1 (mouse)Not determined1171040785172138790Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1171051174174628870Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined171051174175492500Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2333
Count of miRNA genes:680
Interacting mature miRNAs:899
Transcripts:ENSMUST00000005820, ENSMUST00000075469, ENSMUST00000111328, ENSMUST00000133075, ENSMUST00000137298, ENSMUST00000149404, ENSMUST00000152865, ENSMUST00000155126
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI132241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000005820   ⟹   ENSMUSP00000005820
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,213,970 - 171,218,845 (+)Ensembl
RefSeq Acc Id: ENSMUST00000075469   ⟹   ENSMUSP00000074915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,213,971 - 171,218,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111328   ⟹   ENSMUSP00000106960
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,214,021 - 171,218,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133075   ⟹   ENSMUSP00000137852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,214,002 - 171,218,845 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,213,994 - 171,219,001 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,214,349 - 171,218,718 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,214,021 - 171,219,193 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155126   ⟹   ENSMUSP00000137683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,213,986 - 171,220,701 (+)Ensembl
RefSeq Acc Id: NM_001243062   ⟹   NP_001229991
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001243063   ⟹   NP_001229992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009803   ⟹   NP_033933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
MGSCv371173,144,101 - 173,148,975 (+)RGD
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496628   ⟹   XP_006496691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496629   ⟹   XP_006496692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
GRCm381171,213,935 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238743   ⟹   XP_011237045
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
GRCm381171,213,935 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244435   ⟹   XP_030100295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156151   ⟹   XP_036012044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
RefSeq Acc Id: XR_003947935
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947948
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947950
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373594
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373595
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
GRCm381171,213,935 - 171,218,845 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033933   ⟸   NM_009803
- Peptide Label: isoform 1
- UniProtKB: O35627 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229991   ⟸   NM_001243062
- Peptide Label: isoform 2
- UniProtKB: O35627 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229992   ⟸   NM_001243063
- Peptide Label: isoform 3
- UniProtKB: O35627 (UniProtKB/Swiss-Prot),   Q5FW96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496691   ⟸   XM_006496628
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006496692   ⟸   XM_006496629
- Peptide Label: isoform X3
- UniProtKB: Q3UEP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237045   ⟸   XM_011238743
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030100295   ⟸   XM_030244435
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000106960   ⟸   ENSMUST00000111328
RefSeq Acc Id: ENSMUSP00000137852   ⟸   ENSMUST00000133075
RefSeq Acc Id: ENSMUSP00000074915   ⟸   ENSMUST00000075469
RefSeq Acc Id: ENSMUSP00000005820   ⟸   ENSMUST00000005820
RefSeq Acc Id: ENSMUSP00000137683   ⟸   ENSMUST00000155126
RefSeq Acc Id: XP_036012044   ⟸   XM_036156151
- Peptide Label: isoform X3
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6875656
Promoter ID:EPDNEW_M1279
Type:initiation region
Name:Nr1i3_1
Description:Mus musculus nuclear receptor subfamily 1, group I, member 3, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381171,214,021 - 171,214,081EPDNEW
RGD ID:6818182
Promoter ID:MM_KWN:2829
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ENSMUST00000075469,   ENSMUST00000111328,   OTTMUST00000053615,   OTTMUST00000053712,   OTTMUST00000053713,   OTTMUST00000053714,   OTTMUST00000053717,   OTTMUST00000053718,   UC007DNH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361173,143,996 - 173,144,496 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1346307 AgrOrtholog
Ensembl Genes ENSMUSG00000005677 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000005820 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000074915 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106960 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137683 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137852 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005820 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000075469 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111328 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000133075 UniProtKB/TrEMBL
  ENSMUST00000137298 ENTREZGENE
  ENSMUST00000155126 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ThyrH_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12355 UniProtKB/Swiss-Prot
MGD MGI:1346307 ENTREZGENE
NCBI Gene 12355 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB NR1I3 RGD
PhenoGen Nr1i3 PhenoGen
PRINTS STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THYROIDHORMR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt M0QWI8_MOUSE UniProtKB/TrEMBL
  NR1I3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UEP1 ENTREZGENE, UniProtKB/TrEMBL
  Q5FW96 ENTREZGENE, UniProtKB/TrEMBL
  Q8CI30_MOUSE UniProtKB/TrEMBL
UniProt Secondary O35628 UniProtKB/Swiss-Prot
  Q3V008 UniProtKB/Swiss-Prot