Snx24 (sorting nexing 24) - Rat Genome Database

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Gene: Snx24 (sorting nexing 24) Mus musculus
Analyze
Symbol: Snx24
Name: sorting nexing 24
RGD ID: 1552562
MGI Page MGI
Description: Enables phosphatidylinositol-3-phosphate binding activity; phosphatidylinositol-4-phosphate binding activity; and phosphatidylinositol-5-phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasmic vesicle and membrane. Orthologous to human SNX24 (sorting nexin 24).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810011K15Rik; 5730433I16Rik; AI451341; sorting nexin-24
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,376,877 - 53,523,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,378,734 - 53,523,992 (+)EnsemblGRCm39 Ensembl
GRCm381853,243,933 - 53,390,922 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,245,662 - 53,390,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv371853,405,316 - 53,550,491 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361853,371,031 - 53,516,206 (+)NCBIMGSCv36mm8
Celera1854,554,444 - 54,697,562 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1829.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:19576982   PMID:21677750  
PMID:21873635  


Genomics

Comparative Map Data
Snx24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,376,877 - 53,523,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,378,734 - 53,523,992 (+)EnsemblGRCm39 Ensembl
GRCm381853,243,933 - 53,390,922 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,245,662 - 53,390,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv371853,405,316 - 53,550,491 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361853,371,031 - 53,516,206 (+)NCBIMGSCv36mm8
Celera1854,554,444 - 54,697,562 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1829.0NCBI
SNX24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385122,845,613 - 123,029,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5122,843,439 - 123,029,354 (+)EnsemblGRCh38hg38GRCh38
GRCh375122,181,308 - 122,344,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365122,209,170 - 122,372,799 (+)NCBINCBI36Build 36hg18NCBI36
Build 345122,209,169 - 122,372,796NCBI
Celera5118,135,984 - 118,299,375 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5117,368,959 - 117,532,913 (+)NCBIHuRef
CHM1_15121,613,873 - 121,777,513 (+)NCBICHM1_1
T2T-CHM13v2.05123,362,482 - 123,545,865 (+)NCBIT2T-CHM13v2.0
Snx24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,869,804 - 49,024,352 (+)NCBIGRCr8
mRatBN7.21846,670,987 - 46,826,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1846,671,443 - 46,826,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,726,561 - 48,883,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01849,434,299 - 49,588,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,232,473 - 47,389,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,201,653 - 48,355,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,201,728 - 48,355,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01847,416,683 - 47,569,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,712,220 - 48,870,210 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11848,749,842 - 48,907,831 (+)NCBI
Celera1844,855,582 - 45,008,488 (+)NCBICelera
Cytogenetic Map18q11NCBI
Snx24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,045,938 - 1,126,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555211,006,353 - 1,126,062 (+)NCBIChiLan1.0ChiLan1.0
SNX24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24118,126,329 - 118,299,898 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15116,282,586 - 116,453,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05118,236,231 - 118,420,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15124,017,258 - 124,180,960 (+)NCBIpanpan1.1PanPan1.1panPan2
SNX24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,776,934 - 12,869,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,708,712 - 12,888,165 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,490,824 - 11,650,753 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,415,388 - 13,575,423 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11112,155,358 - 12,315,195 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,974,144 - 12,134,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,604,222 - 12,764,198 (+)NCBIUU_Cfam_GSD_1.0
Snx24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213135,158,713 - 135,314,885 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365753,321,101 - 3,396,297 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365753,262,452 - 3,396,132 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2126,349,973 - 126,507,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12126,348,280 - 126,507,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22131,508,288 - 131,668,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12325,897,522 - 26,068,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2325,897,637 - 26,071,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603452,059,357 - 52,231,147 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477419,015,821 - 19,220,094 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477419,017,777 - 19,220,112 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx24
5127 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:523
Count of miRNA genes:285
Interacting mature miRNAs:337
Transcripts:ENSMUST00000025417, ENSMUST00000165032
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse

Markers in Region
AI451341  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,390,406 - 53,390,553UniSTSGRCm38
MGSCv371853,550,060 - 53,550,207UniSTSGRCm37
Celera1854,697,129 - 54,697,276UniSTS
Cytogenetic Map18D1UniSTS
Whitehead/MRC_RH18736.57UniSTS
UniSTS:237806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,249,488 - 53,249,776UniSTSGRCm38
MGSCv371853,409,142 - 53,409,430UniSTSGRCm37
Celera1854,558,271 - 54,558,559UniSTS
Cytogenetic Map18D1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000025417   ⟹   ENSMUSP00000025417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,378,841 - 53,523,895 (+)Ensembl
GRCm38.p6 Ensembl1853,245,769 - 53,390,823 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165032   ⟹   ENSMUSP00000131423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,378,734 - 53,523,992 (+)Ensembl
GRCm38.p6 Ensembl1853,245,662 - 53,390,920 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,378,831 - 53,474,057 (+)Ensembl
GRCm38.p6 Ensembl1853,245,759 - 53,340,985 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,378,800 - 53,473,307 (+)Ensembl
GRCm38.p6 Ensembl1853,245,728 - 53,340,235 (+)Ensembl
RefSeq Acc Id: NM_001370761   ⟹   NP_001357690
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,378,697 - 53,523,994 (+)NCBI
GRCm381853,245,625 - 53,390,922 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029394   ⟹   NP_083670
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,378,697 - 53,523,994 (+)NCBI
GRCm381853,245,625 - 53,390,922 (+)NCBI
MGSCv371853,405,316 - 53,550,491 (+)RGD
Celera1854,554,444 - 54,697,562 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011246995   ⟹   XP_011245297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,376,877 - 53,470,333 (+)NCBI
GRCm381853,243,933 - 53,337,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161271   ⟹   XP_036017164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,433,462 - 53,523,909 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939886
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,376,877 - 53,523,909 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083670   ⟸   NM_029394
- UniProtKB: Q9CRB0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245297   ⟸   XM_011246995
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001357690   ⟸   NM_001370761
- UniProtKB: Q9CRB0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000131423   ⟸   ENSMUST00000165032
RefSeq Acc Id: ENSMUSP00000025417   ⟸   ENSMUST00000025417
RefSeq Acc Id: XP_036017164   ⟸   XM_036161271
- Peptide Label: isoform X2
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CRB0-F1-model_v2 AlphaFold Q9CRB0 1-169 view protein structure

Promoters
RGD ID:13677808
Promoter ID:EPDNEW_M23053
Type:initiation region
Name:Snx24_1
Description:Mus musculus sorting nexing 24 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381853,245,625 - 53,245,685EPDNEW
RGD ID:6829545
Promoter ID:MM_KWN:25295
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_029394,   UC008EXS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361853,404,516 - 53,405,507 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916476 AgrOrtholog
Ensembl Genes ENSMUSG00000024535 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025417 ENTREZGENE
  ENSMUST00000025417.9 UniProtKB/Swiss-Prot
  ENSMUST00000165032 ENTREZGENE
  ENSMUST00000165032.9 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot
InterPro Phox UniProtKB/Swiss-Prot
  PX_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:69226 UniProtKB/Swiss-Prot
MGD MGI:1916476 ENTREZGENE
NCBI Gene 69226 ENTREZGENE
PANTHER SORTING NEXIN-22 AND 24 UniProtKB/Swiss-Prot
  SORTING NEXIN-24 UniProtKB/Swiss-Prot
Pfam PF00787 UniProtKB/Swiss-Prot
PhenoGen Snx24 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot
SMART SM00312 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF64268 UniProtKB/Swiss-Prot
UniProt Q9CRB0 ENTREZGENE, UniProtKB/Swiss-Prot