Tom1l2 (target of myb1-like 2 (chicken)) - Rat Genome Database

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Gene: Tom1l2 (target of myb1-like 2 (chicken)) Mus musculus
Analyze
Symbol: Tom1l2
Name: target of myb1-like 2 (chicken)
RGD ID: 1552516
MGI Page MGI
Description: Predicted to enable clathrin binding activity and protein kinase binding activity. Predicted to be involved in negative regulation of mitotic nuclear division and signal transduction. Predicted to act upstream of or within protein transport. Predicted to be active in endosome and membrane. Orthologous to human TOM1L2 (target of myb1 like 2 membrane trafficking protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900016I08Rik; A730055F12Rik; AU042072; myb1-like protein 2; RP23-456O18.4; Srebf1; target of Myb-like protein 2; TOM1-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,114,622 - 60,243,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,117,540 - 60,243,731 (-)EnsemblGRCm39 Ensembl
GRCm381160,226,714 - 60,352,932 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,226,714 - 60,352,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,040,216 - 60,166,407 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,042,909 - 60,169,100 (-)NCBIMGSCv36mm8
Celera1166,594,747 - 66,648,912 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IBA)
membrane  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cornea morphology  (IAGP)
abnormal eye distance/ position  (IAGP)
abnormal fear/anxiety-related behavior  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal inflammatory response  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen periarteriolar lymphoid sheath morphology  (IAGP)
abnormal splenic cell ratio  (IAGP)
conjunctivitis  (IAGP)
dermatitis  (IAGP)
emphysema  (IAGP)
enlarged spleen  (IAGP)
exophthalmos  (IAGP)
focal hair loss  (IAGP)
hemorrhage  (IAGP)
hydrocephaly  (IAGP)
increased adenoma incidence  (IAGP)
increased B cell number  (IAGP)
increased basal cell carcinoma incidence  (IAGP)
increased CD4-positive, alpha-beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased inflammatory response  (IAGP)
increased leukocyte cell number  (IAGP)
increased locomotor activity  (IAGP)
increased lung tumor incidence  (IAGP)
increased mammary gland tumor incidence  (IAGP)
increased metastatic potential  (IAGP)
increased ovary tumor incidence  (IAGP)
increased prostate gland tumor incidence  (IAGP)
increased skin tumor incidence  (IAGP)
increased spleen white pulp amount  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to infection  (IAGP)
increased T cell number  (IAGP)
increased total body fat amount  (IAGP)
increased tumor incidence  (IAGP)
increased vertical activity  (IAGP)
kidney cyst  (IAGP)
kyphosis  (IAGP)
lymphoid hyperplasia  (IAGP)
malocclusion  (IAGP)
ovary cyst  (IAGP)
skin lesions  (IAGP)
spontaneous skin ulceration  (IAGP)
thrombocytopenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11997338   PMID:12477932   PMID:12520002   PMID:15489334   PMID:15741177   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17114649   PMID:18280001   PMID:18343975   PMID:18799693   PMID:21124890   PMID:21267068   PMID:21873635   PMID:28190767   PMID:29676259   PMID:32325033  
PMID:36293380   PMID:37019113  


Genomics

Comparative Map Data
Tom1l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,114,622 - 60,243,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,117,540 - 60,243,731 (-)EnsemblGRCm39 Ensembl
GRCm381160,226,714 - 60,352,932 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,226,714 - 60,352,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,040,216 - 60,166,407 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,042,909 - 60,169,100 (-)NCBIMGSCv36mm8
Celera1166,594,747 - 66,648,912 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
TOM1L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,843,511 - 17,972,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,843,511 - 17,972,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371717,746,825 - 17,875,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,687,547 - 17,816,509 (-)NCBINCBI36Build 36hg18NCBI36
Build 341717,690,866 - 17,816,443NCBI
Celera1718,687,486 - 18,816,554 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,500,565 - 17,629,531 (-)NCBIHuRef
CHM1_11717,755,606 - 17,884,602 (-)NCBICHM1_1
T2T-CHM13v2.01717,790,194 - 17,919,077 (-)NCBIT2T-CHM13v2.0
Tom1l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,535,548 - 45,657,528 (-)NCBIGRCr8
mRatBN7.21045,036,034 - 45,158,168 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,036,035 - 45,158,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,736,236 - 49,858,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,226,601 - 49,348,721 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,730,203 - 44,852,318 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,599,392 - 46,720,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,602,231 - 46,720,910 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,354,436 - 46,475,909 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,503,435 - 46,612,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,506,694 - 46,626,491 (-)NCBI
Celera1044,306,563 - 44,415,406 (-)NCBICelera
Cytogenetic Map10q22NCBI
Tom1l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495557793,480 - 153,437 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495557793,877 - 153,381 (+)NCBIChiLan1.0ChiLan1.0
TOM1L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21952,360,236 - 52,487,365 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,072,480 - 57,199,566 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01733,324,590 - 33,451,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,272,362 - 38,399,178 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,272,362 - 38,399,178 (+)Ensemblpanpan1.1panPan2
TOM1L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,535,069 - 41,654,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,535,005 - 41,650,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,674,100 - 41,793,147 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,641,433 - 41,760,562 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,641,398 - 41,760,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,609,151 - 41,728,170 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,556,560 - 41,675,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,748,457 - 41,867,500 (+)NCBIUU_Cfam_GSD_1.0
Tom1l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,311,707 - 61,430,403 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,436,814 - 1,555,633 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,436,845 - 1,555,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOM1L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,652,189 - 60,729,259 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,652,153 - 60,729,257 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TOM1L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11616,881,219 - 17,009,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1616,881,156 - 17,009,492 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,899,792 - 4,030,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tom1l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,466,520 - 3,594,738 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,466,572 - 3,594,397 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tom1l2
2675 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8909
Count of miRNA genes:860
Interacting mature miRNAs:1167
Transcripts:ENSMUST00000064019, ENSMUST00000093046, ENSMUST00000093048, ENSMUST00000095254, ENSMUST00000102682, ENSMUST00000102683, ENSMUST00000133420, ENSMUST00000142225, ENSMUST00000143124, ENSMUST00000151284, ENSMUST00000153920
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse

Markers in Region
RH129627  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,226,714 - 60,226,905UniSTSGRCm38
MGSCv371160,040,216 - 60,040,407UniSTSGRCm37
Celera1166,648,721 - 66,648,912UniSTS
Cytogenetic Map11B2UniSTS
M-08448  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,343,171 - 60,343,366UniSTSGRCm38
MGSCv371160,156,673 - 60,156,868UniSTSGRCm37
Celera1167,008,515 - 67,008,710UniSTS
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11795.89UniSTS
AU042072  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,226,946 - 60,227,045UniSTSGRCm38
MGSCv371160,040,448 - 60,040,547UniSTSGRCm37
Celera1166,648,581 - 66,648,680UniSTS
Cytogenetic Map11B2UniSTS
UniSTS:236592  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,226,801 - 60,226,942UniSTSGRCm38
MGSCv371160,040,303 - 60,040,444UniSTSGRCm37
Celera1166,648,684 - 66,648,825UniSTS
Cytogenetic Map11B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001039093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF467887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI848036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000064019   ⟹   ENSMUSP00000063414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,131,396 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,240,570 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000093046   ⟹   ENSMUSP00000090734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,117,541 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,226,715 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000093048   ⟹   ENSMUSP00000090736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,117,541 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,226,715 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000095254   ⟹   ENSMUSP00000092884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,117,540 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,226,714 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102682   ⟹   ENSMUSP00000099743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,131,763 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,240,937 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102683   ⟹   ENSMUSP00000099744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,117,541 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,226,715 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133420   ⟹   ENSMUSP00000117623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,120,728 - 60,135,983 (-)Ensembl
GRCm38.p6 Ensembl1160,229,902 - 60,245,157 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,143,657 - 60,243,731 (-)Ensembl
GRCm38.p6 Ensembl1160,252,831 - 60,352,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143124   ⟹   ENSMUSP00000121936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,120,728 - 60,136,495 (-)Ensembl
GRCm38.p6 Ensembl1160,229,902 - 60,245,669 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,120,429 - 60,122,173 (-)Ensembl
GRCm38.p6 Ensembl1160,229,603 - 60,231,347 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,117,541 - 60,130,002 (-)Ensembl
GRCm38.p6 Ensembl1160,226,715 - 60,239,176 (-)Ensembl
RefSeq Acc Id: NM_001039092   ⟹   NP_001034181
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,540 - 60,243,731 (-)NCBI
GRCm381160,226,714 - 60,352,905 (-)NCBI
MGSCv371160,040,216 - 60,166,407 (-)RGD
Celera1166,594,768 - 66,648,912 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001039093   ⟹   NP_001034182
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,131,396 - 60,243,731 (-)NCBI
GRCm381160,240,570 - 60,352,905 (-)NCBI
MGSCv371160,040,216 - 60,166,407 (-)RGD
Celera1166,594,768 - 66,648,912 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359810   ⟹   NP_001346739
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,131,396 - 60,243,731 (-)NCBI
GRCm381160,240,570 - 60,352,905 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001403888   ⟹   NP_001390817
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,243,766 (-)NCBI
RefSeq Acc Id: NM_001403891   ⟹   NP_001390820
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,243,726 (-)NCBI
RefSeq Acc Id: NM_001403893   ⟹   NP_001390822
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,243,746 (-)NCBI
RefSeq Acc Id: NM_001403895   ⟹   NP_001390824
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,185,239 (-)NCBI
RefSeq Acc Id: NM_001403896   ⟹   NP_001390825
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,243,710 (-)NCBI
RefSeq Acc Id: NM_153080   ⟹   NP_694720
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,540 - 60,243,731 (-)NCBI
GRCm381160,226,714 - 60,352,905 (-)NCBI
MGSCv371160,040,216 - 60,166,407 (-)RGD
Celera1166,594,768 - 66,648,912 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248906   ⟹   XP_011247208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,243,766 (-)NCBI
GRCm381160,226,715 - 60,352,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314451   ⟹   XP_017169940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,130,699 - 60,243,666 (-)NCBI
GRCm381160,239,873 - 60,352,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245804   ⟹   XP_030101664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,185,234 (-)NCBI
GRCm381160,226,715 - 60,294,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245805   ⟹   XP_030101665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,117,541 - 60,179,535 (-)NCBI
GRCm381160,226,715 - 60,288,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156554   ⟹   XP_036012447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,114,622 - 60,243,766 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001034181 (Get FASTA)   NCBI Sequence Viewer  
  NP_001034182 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346739 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390817 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390820 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390822 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390824 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390825 (Get FASTA)   NCBI Sequence Viewer  
  NP_694720 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247208 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169940 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101664 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101665 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012447 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62947 (Get FASTA)   NCBI Sequence Viewer  
  AAI27267 (Get FASTA)   NCBI Sequence Viewer  
  AAL77033 (Get FASTA)   NCBI Sequence Viewer  
  BAC29576 (Get FASTA)   NCBI Sequence Viewer  
  BAC31458 (Get FASTA)   NCBI Sequence Viewer  
  BAC35813 (Get FASTA)   NCBI Sequence Viewer  
  BAE38537 (Get FASTA)   NCBI Sequence Viewer  
  EDL26608 (Get FASTA)   NCBI Sequence Viewer  
  EDL26609 (Get FASTA)   NCBI Sequence Viewer  
  EDL26610 (Get FASTA)   NCBI Sequence Viewer  
  EDL26611 (Get FASTA)   NCBI Sequence Viewer  
  EDL26612 (Get FASTA)   NCBI Sequence Viewer  
  EDL26613 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000063414
  ENSMUSP00000063414.9
  ENSMUSP00000090734.7
  ENSMUSP00000090736.7
  ENSMUSP00000092884
  ENSMUSP00000092884.6
  ENSMUSP00000099743
  ENSMUSP00000099743.5
  ENSMUSP00000099744
  ENSMUSP00000099744.5
  ENSMUSP00000117623.2
  ENSMUSP00000121936.2
GenBank Protein Q5SRX1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_694720   ⟸   NM_153080
- Peptide Label: isoform a
- UniProtKB: Q8CB51 (UniProtKB/Swiss-Prot),   Q8C935 (UniProtKB/Swiss-Prot),   Q8C6J0 (UniProtKB/Swiss-Prot),   Q6P5D7 (UniProtKB/Swiss-Prot),   Q5SRY0 (UniProtKB/Swiss-Prot),   Q5SRX7 (UniProtKB/Swiss-Prot),   A0JP66 (UniProtKB/Swiss-Prot),   Q8R4H1 (UniProtKB/Swiss-Prot),   Q5SRX1 (UniProtKB/Swiss-Prot),   Q5SXA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034181   ⟸   NM_001039092
- Peptide Label: isoform b
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034182   ⟸   NM_001039093
- Peptide Label: isoform c
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247208   ⟸   XM_011248906
- Peptide Label: isoform X2
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169940   ⟸   XM_017314451
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030101664   ⟸   XM_030245804
- Peptide Label: isoform X3
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101665   ⟸   XM_030245805
- Peptide Label: isoform X3
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346739   ⟸   NM_001359810
- Peptide Label: isoform d
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000121936   ⟸   ENSMUST00000143124
RefSeq Acc Id: ENSMUSP00000117623   ⟸   ENSMUST00000133420
RefSeq Acc Id: ENSMUSP00000090734   ⟸   ENSMUST00000093046
RefSeq Acc Id: ENSMUSP00000090736   ⟸   ENSMUST00000093048
RefSeq Acc Id: ENSMUSP00000092884   ⟸   ENSMUST00000095254
RefSeq Acc Id: ENSMUSP00000063414   ⟸   ENSMUST00000064019
RefSeq Acc Id: ENSMUSP00000099744   ⟸   ENSMUST00000102683
RefSeq Acc Id: ENSMUSP00000099743   ⟸   ENSMUST00000102682
RefSeq Acc Id: XP_036012447   ⟸   XM_036156554
- Peptide Label: isoform X6
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390817   ⟸   NM_001403888
- Peptide Label: isoform e
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390822   ⟸   NM_001403893
- Peptide Label: isoform g
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390820   ⟸   NM_001403891
- Peptide Label: isoform f
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390825   ⟸   NM_001403896
- Peptide Label: isoform i
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390824   ⟸   NM_001403895
- Peptide Label: isoform g
- UniProtKB: Q5SXA4 (UniProtKB/TrEMBL)
Protein Domains
GAT   VHS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SRX1-F1-model_v2 AlphaFold Q5SRX1 1-507 view protein structure

Promoters
RGD ID:6822370
Promoter ID:MM_KWN:7698
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain
Transcripts:UC007JFP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,052,314 - 60,052,814 (-)MPROMDB
RGD ID:6822372
Promoter ID:MM_KWN:7700
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:OTTMUST00000012907,   OTTMUST00000012908
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,058,579 - 60,059,079 (-)MPROMDB
RGD ID:6822377
Promoter ID:MM_KWN:7702
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000000550,   ENSMUST00000063998,   ENSMUST00000070805,   ENSMUST00000094140,   NM_001039092,   NM_001039093,   NM_153080,   OTTMUST00000012883,   OTTMUST00000012886,   OTTMUST00000012901,   OTTMUST00000012903,   OTTMUST00000012904,   OTTMUST00000012905
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,165,451 - 60,166,602 (-)MPROMDB
RGD ID:8674870
Promoter ID:EPDNEW_M15466
Type:initiation region
Name:Tom1l2_1
Description:Mus musculus target of myb1-like 2 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,352,884 - 60,352,944EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443306 AgrOrtholog
Ensembl Genes ENSMUSG00000000538 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064019 ENTREZGENE
  ENSMUST00000064019.15 UniProtKB/Swiss-Prot
  ENSMUST00000093046.13 UniProtKB/TrEMBL
  ENSMUST00000093048.13 UniProtKB/TrEMBL
  ENSMUST00000095254 ENTREZGENE
  ENSMUST00000095254.12 UniProtKB/Swiss-Prot
  ENSMUST00000102682 ENTREZGENE
  ENSMUST00000102682.5 UniProtKB/Swiss-Prot
  ENSMUST00000102683 ENTREZGENE
  ENSMUST00000102683.11 UniProtKB/Swiss-Prot
  ENSMUST00000133420.8 UniProtKB/TrEMBL
  ENSMUST00000143124.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TOM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TOM1L2 UniProtKB/Swiss-Prot
  VHS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:216810 UniProtKB/Swiss-Prot
MGD MGI:2443306 ENTREZGENE
NCBI Gene 216810 ENTREZGENE
PANTHER PTHR13856:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS DOMAIN CONTAINING PROTEIN FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tom1l2 PhenoGen
PIRSF TOM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP GAT-like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0JP66 ENTREZGENE
  F6RBX1_MOUSE UniProtKB/TrEMBL
  F6ZDJ1_MOUSE UniProtKB/TrEMBL
  Q5SRX1 ENTREZGENE
  Q5SRX7 ENTREZGENE
  Q5SRY0 ENTREZGENE
  Q5SXA4 ENTREZGENE, UniProtKB/TrEMBL
  Q5SXA5_MOUSE UniProtKB/TrEMBL
  Q6P5D7 ENTREZGENE
  Q8C6J0 ENTREZGENE
  Q8C935 ENTREZGENE
  Q8CB51 ENTREZGENE
  Q8R4H1 ENTREZGENE
  TM1L2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A0JP66 UniProtKB/Swiss-Prot
  Q5SRX7 UniProtKB/Swiss-Prot
  Q5SRY0 UniProtKB/Swiss-Prot
  Q6P5D7 UniProtKB/Swiss-Prot
  Q8C6J0 UniProtKB/Swiss-Prot
  Q8C935 UniProtKB/Swiss-Prot
  Q8CB51 UniProtKB/Swiss-Prot
  Q8R4H1 UniProtKB/Swiss-Prot