Or2t29 (olfactory receptor family 2 subfamily T member 29) - Rat Genome Database

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Gene: Or2t29 (olfactory receptor family 2 subfamily T member 29) Mus musculus
Analyze
Symbol: Or2t29
Name: olfactory receptor family 2 subfamily T member 29
RGD ID: 1552476
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2T4 (olfactory receptor family 2 subfamily T member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2NKPP-882068-883006; MOR275; MOR275-6P; olfactory receptor 329; olfactory receptor 329, pseudogene; olfactory receptor MOR275-6P; Olfr3; Olfr329; Olfr329-ps
RGD Orthologs
Human
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,433,273 - 58,434,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,430,627 - 58,437,248 (-)EnsemblGRCm39 Ensembl
GRCm381158,542,447 - 58,543,483 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,539,801 - 58,546,422 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,355,949 - 58,358,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,358,713 - 58,359,651 (-)NCBIMGSCv36mm8
Celera1163,287,880 - 63,290,352 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or2t29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,433,273 - 58,434,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,430,627 - 58,437,248 (-)EnsemblGRCm39 Ensembl
GRCm381158,542,447 - 58,543,483 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,539,801 - 58,546,422 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,355,949 - 58,358,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,358,713 - 58,359,651 (-)NCBIMGSCv36mm8
Celera1163,287,880 - 63,290,352 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.19NCBI
OR2T29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,556,912 - 248,562,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,556,912 - 248,562,772 (-)EnsemblGRCh38hg38GRCh38
GRCh371248,720,213 - 248,726,073 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,788,468 - 246,789,397 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,047,885 - 245,048,815NCBI
Celera1221,934,029 - 221,934,958 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1219,105,714 - 219,106,661 (-)NCBIHuRef
CHM1_11249,994,242 - 249,995,215 (-)NCBICHM1_1
T2T-CHM13v2.01247,995,581 - 248,001,437 (-)NCBIT2T-CHM13v2.0
Or2t29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81043,407,367 - 43,411,579 (-)NCBIGRCr8
mRatBN7.21042,907,259 - 42,908,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1042,907,259 - 42,908,197 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1047,569,083 - 47,570,021 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,059,530 - 47,060,468 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01042,563,030 - 42,563,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01044,145,778 - 44,149,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1044,146,097 - 44,147,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,954,415 - 43,955,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41044,385,720 - 44,386,658 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11044,399,342 - 44,400,281 (-)NCBI
Celera1042,193,570 - 42,194,508 (-)NCBICelera
Cytogenetic Map10q22NCBI
LOC100971901
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21441,154 - 442,101 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11711,602 - 712,549 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,247,006 - 224,247,953 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,671,195 - 229,672,225 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in Or2t29
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:104
Interacting mature miRNAs:105
Transcripts:ENSMUST00000072373, ENSMUST00000134055, ENSMUST00000168105
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
13513917Heal54_mwound healing/ regeneration 54 (mouse)115787291759879610Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000108822   ⟹   ENSMUSP00000104450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,433,273 - 58,435,764 (-)Ensembl
GRCm38.p6 Ensembl1158,542,447 - 58,544,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108823   ⟹   ENSMUSP00000104451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,433,273 - 58,434,332 (-)Ensembl
GRCm38.p6 Ensembl1158,542,447 - 58,543,506 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219448   ⟹   ENSMUSP00000151648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,430,627 - 58,437,248 (-)Ensembl
GRCm38.p6 Ensembl1158,539,801 - 58,546,422 (-)Ensembl
RefSeq Acc Id: NM_001011531   ⟹   NP_001011531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,433,273 - 58,434,309 (-)NCBI
GRCm381158,542,447 - 58,543,483 (-)NCBI
MGSCv371158,355,949 - 58,358,440 (-)RGD
Celera1163,287,880 - 63,290,352 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001011531 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47084 (Get FASTA)   NCBI Sequence Viewer  
  AAI47085 (Get FASTA)   NCBI Sequence Viewer  
  AAP70866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000104450.3
  ENSMUSP00000104451
  ENSMUSP00000104451.3
  ENSMUSP00000151648.2
RefSeq Acc Id: NP_001011531   ⟸   NM_001011531
- UniProtKB: M9MMK5 (UniProtKB/TrEMBL),   M9MMK4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000151648   ⟸   ENSMUST00000219448
Ensembl Acc Id: ENSMUSP00000104450   ⟸   ENSMUST00000108822
Ensembl Acc Id: ENSMUSP00000104451   ⟸   ENSMUST00000108823
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M9MMK4-F1-model_v2 AlphaFold M9MMK4 1-331 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030163 AgrOrtholog
Ensembl Genes ENSMUSG00000064252 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108822.8 UniProtKB/TrEMBL
  ENSMUST00000108823 ENTREZGENE
  ENSMUST00000108823.3 UniProtKB/TrEMBL
  ENSMUST00000219448.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:259148 UniProtKB/TrEMBL
MGD MGI:3030163 ENTREZGENE
NCBI Gene 259148 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 2T29-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or2t29 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt M9MMK4 ENTREZGENE, UniProtKB/TrEMBL
  M9MMK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or2t29  olfactory receptor family 2 subfamily T member 29  Olfr329  olfactory receptor 329  Symbol and/or name change 5135510 APPROVED
2019-09-03 Olfr329  olfactory receptor 329  Olfr329-ps  olfactory receptor 329, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 Olfr329-ps  olfactory receptor 329, pseudogene  Olfr329  olfactory receptor 329  Symbol and/or name change 5135510 APPROVED