Podxl2 (podocalyxin-like 2) - Rat Genome Database
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Gene: Podxl2 (podocalyxin-like 2) Mus musculus
Analyze
Symbol: Podxl2
Name: podocalyxin-like 2
RGD ID: 1552380
MGI Page MGI
Description: Predicted to be involved in leukocyte tethering or rolling. Predicted to localize to integral component of membrane. Is expressed in gut; nervous system; renal cortex; respiratory tract; and sensory organ. Orthologous to human PODXL2 (podocalyxin like 2); INTERACTS WITH 3,4-methylenedioxymethamphetamine; benzo[a]pyrene; choline.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D130074J02Rik; Endog; endoglycan; POD; PODLX2; podocalyxin-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,819,539 - 88,852,063 (-)NCBIGRCm39mm39
GRCm38688,842,557 - 88,875,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,842,558 - 88,875,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv37688,792,552 - 88,824,038 (-)NCBIGRCm37mm9NCBIm37
MGSCv36688,808,206 - 88,839,685 (-)NCBImm8
Celera690,780,757 - 90,812,060 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:15701716   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16452087  
PMID:18287559   PMID:21677750   PMID:21873635   PMID:27542690   PMID:27626380  


Genomics

Comparative Map Data
Podxl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,819,539 - 88,852,063 (-)NCBIGRCm39mm39
GRCm38688,842,557 - 88,875,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,842,558 - 88,875,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv37688,792,552 - 88,824,038 (-)NCBIGRCm37mm9NCBIm37
MGSCv36688,808,206 - 88,839,685 (-)NCBImm8
Celera690,780,757 - 90,812,060 (-)NCBICelera
Cytogenetic Map6D1NCBI
PODXL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3127,629,185 - 127,672,802 (+)EnsemblGRCh38hg38GRCh38
GRCh383127,629,185 - 127,672,802 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373127,348,028 - 127,391,645 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh373127,348,002 - 127,391,653 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363128,830,729 - 128,874,342 (+)NCBINCBI36hg18NCBI36
Build 343128,830,757 - 128,874,343NCBI
Celera3125,774,516 - 125,818,509 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3124,737,918 - 124,772,415 (+)NCBIHuRef
CHM1_13127,311,335 - 127,354,973 (+)NCBICHM1_1
Podxl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24121,306,224 - 121,338,070 (-)NCBI
Rnor_6.0 Ensembl4120,785,495 - 120,817,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04120,785,494 - 120,817,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04186,026,103 - 186,057,942 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,937,318 - 122,969,158 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14123,181,806 - 123,213,244 (-)NCBI
Celera4110,259,432 - 110,291,285 (-)NCBICelera
Cytogenetic Map4q34NCBI
Podxl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,968,877 - 15,995,617 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,968,877 - 15,995,617 (-)NCBIChiLan1.0ChiLan1.0
PODXL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13131,981,894 - 132,023,746 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3131,981,894 - 132,023,747 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03124,673,860 - 124,717,469 (+)NCBIMhudiblu_PPA_v0panPan3
PODXL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl201,716,666 - 1,760,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1201,716,672 - 1,752,872 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Podxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936798736,003 - 745,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PODXL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1372,579,307 - 72,622,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11372,579,310 - 72,630,179 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21380,097,261 - 80,140,920 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PODXL2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12253,370,668 - 53,405,832 (-)NCBI
ChlSab1.1 Ensembl2253,371,004 - 53,403,512 (-)Ensembl
Podxl2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462497443,578 - 76,918 (+)NCBI

Position Markers
Podxl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2247
Count of miRNA genes:661
Interacting mature miRNAs:852
Transcripts:ENSMUST00000038409, ENSMUST00000061262, ENSMUST00000124562, ENSMUST00000135843, ENSMUST00000140455, ENSMUST00000141348, ENSMUST00000141401, ENSMUST00000142266, ENSMUST00000145780, ENSMUST00000145944, ENSMUST00000153852
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE954844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038409   ⟹   ENSMUSP00000040417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,842,565 - 88,874,045 (-)Ensembl
RefSeq Acc Id: ENSMUST00000061262   ⟹   ENSMUSP00000058985
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,842,565 - 88,874,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,843,538 - 88,845,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,864,811 - 88,874,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140455   ⟹   ENSMUSP00000120870
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,849,679 - 88,874,738 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141348
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,844,176 - 88,849,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141401
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,842,558 - 88,843,720 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142266
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,849,814 - 88,865,266 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145780   ⟹   ENSMUSP00000120460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,849,679 - 88,874,796 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145944   ⟹   ENSMUSP00000117954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,842,579 - 88,875,044 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,864,276 - 88,874,989 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205158
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,846,968 - 88,848,843 (-)Ensembl
RefSeq Acc Id: NM_001347327   ⟹   NP_001334256
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,028 (-)NCBI
GRCm38688,842,557 - 88,875,046 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364575   ⟹   NP_001351504
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379217   ⟹   NP_001366146
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,028 (-)NCBI
GRCm38688,842,557 - 88,875,046 (-)NCBI
RefSeq Acc Id: NM_001379218   ⟹   NP_001366147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_001379219   ⟹   NP_001366148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_001379220   ⟹   NP_001366149
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_001379221   ⟹   NP_001366150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_001379222   ⟹   NP_001366151
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_001379223   ⟹   NP_001366152
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,755 (-)NCBI
GRCm38688,842,557 - 88,874,773 (-)NCBI
RefSeq Acc Id: NM_176973   ⟹   NP_795947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,047 (-)NCBI
GRCm38688,842,557 - 88,874,065 (-)NCBI
MGSCv37688,792,552 - 88,824,038 (-)RGD
Celera690,780,757 - 90,812,060 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166540
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,028 (-)NCBI
GRCm38688,842,557 - 88,875,046 (-)NCBI
RefSeq Acc Id: XM_011241375   ⟹   XP_011239677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,995 (-)NCBI
GRCm38688,842,557 - 88,875,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241376   ⟹   XP_011239678
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,099 (-)NCBI
GRCm38688,842,557 - 88,874,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255445   ⟹   XP_030111305
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,784 (-)NCBI
GRCm38688,842,557 - 88,874,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255447   ⟹   XP_030111307
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,799 (-)NCBI
GRCm38688,842,557 - 88,874,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255448   ⟹   XP_030111308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,851,807 (-)NCBI
GRCm38688,842,557 - 88,874,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166218   ⟹   XP_036022111
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,063 (-)NCBI
RefSeq Acc Id: XR_004942963
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,063 (-)NCBI
RefSeq Acc Id: XR_004942964
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,819,539 - 88,852,063 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_795947   ⟸   NM_176973
- Peptide Label: isoform 2
- UniProtKB: Q8CAE9 (UniProtKB/Swiss-Prot),   G3X9D3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239677   ⟸   XM_011241375
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011239678   ⟸   XM_011241376
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030111307   ⟸   XM_030255447
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030111308   ⟸   XM_030255448
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030111305   ⟸   XM_030255445
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001334256   ⟸   NM_001347327
- Peptide Label: isoform 1 precursor
- UniProtKB: D3YW47 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001351504   ⟸   NM_001364575
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366146   ⟸   NM_001379217
- Peptide Label: isoform 3 precursor
RefSeq Acc Id: NP_001366148   ⟸   NM_001379219
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366150   ⟸   NM_001379221
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366149   ⟸   NM_001379220
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366151   ⟸   NM_001379222
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366152   ⟸   NM_001379223
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366147   ⟸   NM_001379218
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000120460   ⟸   ENSMUST00000145780
RefSeq Acc Id: ENSMUSP00000117954   ⟸   ENSMUST00000145944
RefSeq Acc Id: ENSMUSP00000120870   ⟸   ENSMUST00000140455
RefSeq Acc Id: ENSMUSP00000058985   ⟸   ENSMUST00000061262
RefSeq Acc Id: ENSMUSP00000040417   ⟸   ENSMUST00000038409
RefSeq Acc Id: XP_036022111   ⟸   XM_036166218
- Peptide Label: isoform X1

Promoters
RGD ID:6839769
Promoter ID:MM_KWN:46830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000059572
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,793,241 - 88,793,741 (-)MPROMDB
RGD ID:6839765
Promoter ID:MM_KWN:46831
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000059570
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,796,411 - 88,796,911 (-)MPROMDB
RGD ID:6838891
Promoter ID:MM_KWN:46832
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:OTTMUST00000059571,   UC009CVV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,797,511 - 88,799,012 (-)MPROMDB
RGD ID:6839767
Promoter ID:MM_KWN:46833
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000059573
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,814,706 - 88,815,206 (-)MPROMDB
RGD ID:6839763
Promoter ID:MM_KWN:46834
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000061262,   ENSMUST00000089447,   OTTMUST00000059564,   OTTMUST00000059565,   OTTMUST00000059566,   OTTMUST00000059567,   OTTMUST00000059568,   OTTMUST00000059569
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,823,856 - 88,824,356 (-)MPROMDB
RGD ID:6890386
Promoter ID:EPDNEW_M8644
Type:initiation region
Name:Podxl2_1
Description:Mus musculus podocalyxin-like 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38688,875,046 - 88,875,106EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442488 AgrOrtholog
Ensembl Genes ENSMUSG00000033152 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040417 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000058985 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000117954 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000120460 UniProtKB/TrEMBL
  ENSMUSP00000120870 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038409 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000061262 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000140455 UniProtKB/TrEMBL
  ENSMUST00000145780 UniProtKB/TrEMBL
  ENSMUST00000145944 ENTREZGENE, UniProtKB/TrEMBL
InterPro CD34/Podocalyxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PODXL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319655 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2442488 ENTREZGENE
NCBI Gene 319655 ENTREZGENE
PANTHER PTHR15594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD34_antigen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Podxl2 PhenoGen
UniProt D3YW47 ENTREZGENE, UniProtKB/TrEMBL
  D3YZ50_MOUSE UniProtKB/TrEMBL
  G3X9D3 ENTREZGENE, UniProtKB/TrEMBL
  PDXL2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8CFW3 UniProtKB/Swiss-Prot