Ankmy2 (ankyrin repeat and MYND domain containing 2) - Rat Genome Database

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Gene: Ankmy2 (ankyrin repeat and MYND domain containing 2) Mus musculus
Analyze
Symbol: Ankmy2
Name: ankyrin repeat and MYND domain containing 2
RGD ID: 1552350
MGI Page MGI
Description: Enables enzyme binding activity. Predicted to be located in cilium. Is expressed in brain; spinal cord; tail dorsal root ganglion; and trigeminal ganglion. Orthologous to human ANKMY2 (ankyrin repeat and MYND domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI035571; ankyrin repeat and MYND domain-containing protein 2; MGC18754; ZMYND20
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,207,123 - 36,247,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,207,113 - 36,247,290 (+)EnsemblGRCm39 Ensembl
GRCm381236,157,124 - 36,197,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,157,114 - 36,197,291 (+)EnsemblGRCm38mm10GRCm38
MGSCv371236,883,711 - 36,923,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361236,667,456 - 36,707,557 (+)NCBIMGSCv36mm8
Celera1237,611,389 - 37,654,049 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21124868   PMID:21267068   PMID:21873635  
PMID:25077969   PMID:32325033   PMID:32702291  


Genomics

Comparative Map Data
Ankmy2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,207,123 - 36,247,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,207,113 - 36,247,290 (+)EnsemblGRCm39 Ensembl
GRCm381236,157,124 - 36,197,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,157,114 - 36,197,291 (+)EnsemblGRCm38mm10GRCm38
MGSCv371236,883,711 - 36,923,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361236,667,456 - 36,707,557 (+)NCBIMGSCv36mm8
Celera1237,611,389 - 37,654,049 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.54NCBI
ANKMY2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,599,779 - 16,645,754 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,599,779 - 16,645,817 (-)EnsemblGRCh38hg38GRCh38
GRCh37716,639,404 - 16,685,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,605,937 - 16,651,923 (-)NCBINCBI36Build 36hg18NCBI36
Build 34716,412,651 - 16,458,638NCBI
Celera716,619,158 - 16,665,198 (-)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef716,526,082 - 16,571,911 (-)NCBIHuRef
CHM1_1716,639,148 - 16,685,165 (-)NCBICHM1_1
T2T-CHM13v2.0716,729,480 - 16,775,453 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,692,527 - 16,738,565 (-)NCBI
Ankmy2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,616,251 - 58,657,634 (+)NCBIGRCr8
mRatBN7.2652,888,959 - 52,930,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl652,888,963 - 52,930,394 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx653,181,587 - 53,222,988 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,496,448 - 53,537,853 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0652,960,187 - 53,001,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,646,905 - 55,689,223 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,648,021 - 55,689,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0665,261,174 - 65,303,415 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4654,881,681 - 54,923,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1654,883,873 - 54,926,014 (+)NCBI
Celera652,031,590 - 52,072,350 (+)NCBICelera
Cytogenetic Map6q16NCBI
Ankmy2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,778,736 - 19,813,150 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,778,736 - 19,812,731 (-)NCBIChiLan1.0ChiLan1.0
ANKMY2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2621,434,100 - 21,480,642 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1769,758,806 - 69,805,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0717,255,793 - 17,301,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1716,581,302 - 16,628,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,581,308 - 16,628,359 (-)Ensemblpanpan1.1panPan2
ANKMY2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11431,117,375 - 31,153,916 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,118,013 - 31,153,874 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1430,638,612 - 30,675,160 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01431,037,340 - 31,073,909 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1431,037,346 - 31,073,910 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11431,139,839 - 31,176,402 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01430,852,111 - 30,888,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01431,164,939 - 31,201,520 (-)NCBIUU_Cfam_GSD_1.0
Ankmy2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511875,448,648 - 75,484,619 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365463,123,279 - 3,159,793 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365463,124,124 - 3,159,701 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKMY2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,848,002 - 85,887,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,850,646 - 85,887,450 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANKMY2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,470,011 - 41,517,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2141,470,033 - 41,517,608 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604262,993,517 - 63,040,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankmy2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473913,580,173 - 13,619,385 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473913,580,903 - 13,615,812 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ankmy2
1651 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:541
Count of miRNA genes:347
Interacting mature miRNAs:387
Transcripts:ENSMUST00000041640
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
14696690Rfq1_mrearing frequency QTL 1, males (mouse)123604999937049999Mouse

Markers in Region
AI035571  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381236,197,089 - 36,197,229UniSTSGRCm38
MGSCv371236,923,676 - 36,923,816UniSTSGRCm37
Celera1237,653,847 - 37,653,987UniSTS
Cytogenetic Map12A3UniSTS
Whitehead/MRC_RH12339.16UniSTS
UniSTS:236833  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381236,196,667 - 36,196,929UniSTSGRCm38
MGSCv371236,923,254 - 36,923,516UniSTSGRCm37
Celera1237,653,425 - 37,653,687UniSTS
Cytogenetic Map12A3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000041640   ⟹   ENSMUSP00000039484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1236,207,113 - 36,247,290 (+)Ensembl
GRCm38.p6 Ensembl1236,157,114 - 36,197,291 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1236,207,157 - 36,238,225 (+)Ensembl
GRCm38.p6 Ensembl1236,157,158 - 36,188,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1236,217,325 - 36,246,415 (+)Ensembl
GRCm38.p6 Ensembl1236,167,326 - 36,196,416 (+)Ensembl
RefSeq Acc Id: NM_146033   ⟹   NP_666145
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391236,207,123 - 36,247,290 (+)NCBI
GRCm381236,157,124 - 36,197,291 (+)ENTREZGENE
MGSCv371236,883,711 - 36,923,878 (+)RGD
Celera1237,611,389 - 37,654,049 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036157307   ⟹   XP_036013200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391236,207,135 - 36,247,285 (+)NCBI
Sequence:
RefSeq Acc Id: NP_666145   ⟸   NM_146033
- UniProtKB: Q8R3N4 (UniProtKB/Swiss-Prot),   Q8BYW5 (UniProtKB/Swiss-Prot),   Q8BK14 (UniProtKB/Swiss-Prot),   Q921J1 (UniProtKB/Swiss-Prot),   Q3TPE9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000039484   ⟸   ENSMUST00000041640
RefSeq Acc Id: XP_036013200   ⟸   XM_036157307
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TPE9-F1-model_v2 AlphaFold Q3TPE9 1-440 view protein structure

Promoters
RGD ID:8678156
Promoter ID:EPDNEW_M17109
Type:initiation region
Name:Ankmy2_1
Description:Mus musculus ankyrin repeat and MYND domain containing 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381236,157,202 - 36,157,262EPDNEW
RGD ID:6822726
Promoter ID:MM_KWN:11516
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_025840,   NM_146033,   UC007NJQ.1,   UC007NJR.1,   UC007NJS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361236,883,231 - 36,884,502 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144755 AgrOrtholog
Ensembl Genes ENSMUSG00000036188 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041640 ENTREZGENE
  ENSMUST00000041640.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot
  6.10.140.2220 UniProtKB/Swiss-Prot
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  Znf_MYND UniProtKB/Swiss-Prot
KEGG Report mmu:217473 UniProtKB/Swiss-Prot
MGD MGI:2144755 ENTREZGENE
NCBI Gene 217473 ENTREZGENE
PANTHER ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot
  ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  zf-MYND UniProtKB/Swiss-Prot
PhenoGen Ankmy2 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
  ZF_MYND_1 UniProtKB/Swiss-Prot
  ZF_MYND_2 UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/Swiss-Prot
  SSF48403 UniProtKB/Swiss-Prot
UniProt ANKY2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BK14 ENTREZGENE
  Q8BYW5 ENTREZGENE
  Q8R3N4 ENTREZGENE
  Q921J1 ENTREZGENE
UniProt Secondary Q8BK14 UniProtKB/Swiss-Prot
  Q8BYW5 UniProtKB/Swiss-Prot
  Q8R3N4 UniProtKB/Swiss-Prot
  Q921J1 UniProtKB/Swiss-Prot