Ptprb (protein tyrosine phosphatase, receptor type, B) - Rat Genome Database

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Gene: Ptprb (protein tyrosine phosphatase, receptor type, B) Mus musculus
Analyze
Symbol: Ptprb
Name: protein tyrosine phosphatase, receptor type, B
RGD ID: 1552328
MGI Page MGI
Description: Predicted to enable cadherin binding activity. Involved in angiogenesis and peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Is expressed in several structures, including cardiovascular system; central nervous system; embryo mesenchyme; genitourinary system; and liver. Orthologous to human PTPRB (protein tyrosine phosphatase receptor type B).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3230402H02Rik; C130094E24; protein-tyrosine phosphatase beta; Ptpz; R-PTP-beta; receptor-type tyrosine-protein phosphatase beta; Rptpb; vascular endothelial protein tyrosine phosphatase; VE-; VE-PTP; Veptp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910116,111,407 - 116,225,443 (+)NCBIGRCm39mm39
GRCm39 Ensembl10116,111,428 - 116,225,440 (+)Ensembl
GRCm3810116,275,502 - 116,389,538 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10116,275,523 - 116,389,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,738,430 - 115,826,594 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610115,705,616 - 115,788,043 (+)NCBImm8
Celera10118,242,005 - 118,330,326 (+)NCBICelera
Cytogenetic Map10D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
angiosarcoma  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1454056   PMID:1655529   PMID:7804149   PMID:7832766   PMID:10349636   PMID:10557082   PMID:11042159   PMID:11076861   PMID:12234928   PMID:12477932   PMID:16141072   PMID:16141073  
PMID:16514057   PMID:17360632   PMID:18361428   PMID:18647637   PMID:19015309   PMID:19451274   PMID:20018779   PMID:20301196   PMID:21267068   PMID:21559415   PMID:21857650   PMID:21873635  
PMID:22869525   PMID:23382219   PMID:23575676   PMID:23908467   PMID:25180601   PMID:25361541   PMID:26063811   PMID:26642851   PMID:26773517   PMID:28385807   PMID:28542220   PMID:28870991  
PMID:29358379   PMID:29518331   PMID:30886059   PMID:30948425   PMID:31621585   PMID:32325033   PMID:33057196   PMID:33315051   PMID:34663817   PMID:34884741  


Genomics

Comparative Map Data
Ptprb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910116,111,407 - 116,225,443 (+)NCBIGRCm39mm39
GRCm39 Ensembl10116,111,428 - 116,225,440 (+)Ensembl
GRCm3810116,275,502 - 116,389,538 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10116,275,523 - 116,389,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,738,430 - 115,826,594 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610115,705,616 - 115,788,043 (+)NCBImm8
Celera10118,242,005 - 118,330,326 (+)NCBICelera
Cytogenetic Map10D2NCBI
PTPRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1270,515,870 - 70,637,440 (-)EnsemblGRCh38hg38GRCh38
GRCh381270,515,870 - 70,637,440 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371270,909,650 - 71,031,209 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361269,196,897 - 69,317,486 (-)NCBINCBI36hg18NCBI36
Build 341269,201,230 - 69,289,891NCBI
Celera1270,574,292 - 70,694,892 (-)NCBI
Cytogenetic Map12q15NCBI
HuRef1267,960,230 - 68,080,615 (-)NCBIHuRef
CHM1_11270,879,907 - 71,000,488 (-)NCBICHM1_1
Ptprb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2751,953,375 - 52,034,751 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl751,930,015 - 52,034,748 (+)Ensembl
Rnor_6.0759,326,484 - 59,431,114 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl759,326,518 - 59,425,718 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0759,358,899 - 59,441,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4755,613,557 - 55,714,216 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1755,634,330 - 55,732,082 (+)NCBI
Celera748,711,322 - 48,812,447 (+)NCBICelera
Cytogenetic Map7q22NCBI
Ptprb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540510,648,818 - 10,766,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540510,647,777 - 10,766,909 (-)NCBIChiLan1.0ChiLan1.0
PTPRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11270,797,843 - 70,915,318 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1270,797,843 - 70,915,308 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01268,025,973 - 68,147,613 (-)NCBIMhudiblu_PPA_v0panPan3
PTPRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11012,267,891 - 12,384,522 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1012,241,716 - 12,384,435 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1012,206,342 - 12,323,493 (-)NCBI
ROS_Cfam_1.01012,399,792 - 12,516,770 (-)NCBI
ROS_Cfam_1.0 Ensembl1012,373,481 - 12,517,277 (-)Ensembl
UMICH_Zoey_3.11012,265,927 - 12,382,361 (-)NCBI
UNSW_CanFamBas_1.01012,512,972 - 12,629,456 (-)NCBI
UU_Cfam_GSD_1.01012,636,704 - 12,753,669 (-)NCBI
Ptprb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494545,842,565 - 45,962,671 (+)NCBI
SpeTri2.0NW_0049365458,150,766 - 8,235,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl534,660,029 - 34,794,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1534,656,460 - 34,794,838 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2537,232,103 - 37,330,419 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11166,095,445 - 66,222,402 (-)NCBIChlSab1.1chlSab2
ChlSab1.11166,095,445 - 66,222,402 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1166,101,038 - 66,221,982 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037179,455,085 - 179,582,365 (+)NCBIVero_WHO_p1.0
Ptprb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475027,188,858 - 27,320,470 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D10Mit295  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810116,354,953 - 116,355,075UniSTSGRCm38
MGSCv3710115,792,009 - 115,792,131UniSTSGRCm37
Celera10118,295,446 - 118,295,568UniSTS
Cytogenetic Map10D2UniSTS
cM Map1063.0UniSTS
Whitehead Genetic1065.6UniSTS
Whitehead_YAC10 UniSTS
D10Mit46  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810116,384,730 - 116,384,957UniSTSGRCm38
MGSCv3710115,821,786 - 115,822,013UniSTSGRCm37
Celera10118,325,517 - 118,325,744UniSTS
Cytogenetic Map10D2UniSTS
cM Map1063.0UniSTS
Whitehead Genetic1065.6UniSTS
Whitehead/MRC_RH101225.25UniSTS
Whitehead_YAC10 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105205399130694993Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099384730130694993Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088252393122252530Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1087073224121073368Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099384730130694993Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101661259130694993Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084243786122205623Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105343808130694993Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099473556116384957Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101661259130694993Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97922739130694993Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085619118118661448Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097700000130694993Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108739225130694993Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102900000123400000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
4141242Psrs2_mpsoriasis susceptibility 2 (mouse)Not determined10114381196118661448Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110617486125680038Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397381196130694993Mouse
1300796Lmr5_mleishmaniasis resistance 5 (mouse)Not determined10116384730122343923Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10103066603130694993Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108800000125600000Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined89000595123000595Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84243786122205623Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113700000121800000Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084243786122205623Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84243786122205623Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105205399130694993Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108680038130694993Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114800000122900000Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110200000125600000Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108739225130694993Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108680038130694993Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10103011947130694993Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111732321118150744Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113700000125900000Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1090091790124091893Mouse
13208554Lgth11_mbody length 11 (mouse)1091000000121000000Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105205399130694993Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1087073224121073368Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099473556116384957Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10101150611130694993Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114400000122900000Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114500000123800000Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099384730130694993Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105252393118661448Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10101150611130694993Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097381196130694993Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084243786122205623Mouse
14746996Manh69_mmandible shape 69 (mouse)10104927733130694993Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097381196130694993Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104274116130694993Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086877747120877895Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103407822130694993Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090671039125739363Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102671003130694993Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097381196130694993Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110617486125680038Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108739225130694993Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108739225130694993Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105343808130694993Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105343808130694993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1596
Count of miRNA genes:752
Interacting mature miRNAs:945
Transcripts:ENSMUST00000092167
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_029928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA790811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC135862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF157628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY077755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X58289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000092167   ⟹   ENSMUSP00000089805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,137,277 - 116,225,440 (+)Ensembl
GRCm38.p6 Ensembl10116,301,372 - 116,389,535 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,111,428 - 116,155,826 (+)Ensembl
GRCm38.p6 Ensembl10116,275,523 - 116,319,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218553   ⟹   ENSMUSP00000151821
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,111,455 - 116,219,911 (+)Ensembl
GRCm38.p6 Ensembl10116,275,550 - 116,384,006 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218601
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,111,428 - 116,113,606 (+)Ensembl
GRCm38.p6 Ensembl10116,275,523 - 116,277,701 (+)Ensembl
RefSeq Acc Id: NM_029928   ⟹   NP_084204
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,137,279 - 116,225,443 (+)NCBI
GRCm3810116,301,374 - 116,389,538 (+)NCBI
MGSCv3710115,738,430 - 115,826,594 (+)RGD
Celera10118,242,005 - 118,330,326 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513378   ⟹   XP_006513441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,111,428 - 116,225,443 (+)NCBI
GRCm3810116,275,502 - 116,389,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155693   ⟹   XP_036011586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,111,407 - 116,225,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155694   ⟹   XP_036011587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,111,407 - 116,220,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155695   ⟹   XP_036011588
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,111,407 - 116,225,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155696   ⟹   XP_036011589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,111,407 - 116,225,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155697   ⟹   XP_036011590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,137,228 - 116,225,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155698   ⟹   XP_036011591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,137,229 - 116,225,443 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084204   ⟸   NM_029928
- Peptide Label: precursor
- UniProtKB: B2RU80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513441   ⟸   XM_006513378
- Peptide Label: isoform X3
- UniProtKB: A0A1W2P7W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151821   ⟸   ENSMUST00000218553
RefSeq Acc Id: ENSMUSP00000089805   ⟸   ENSMUST00000092167
RefSeq Acc Id: XP_036011586   ⟸   XM_036155693
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011588   ⟸   XM_036155695
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036011589   ⟸   XM_036155696
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036011587   ⟸   XM_036155694
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036011590   ⟸   XM_036155697
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036011591   ⟸   XM_036155698
- Peptide Label: isoform X7
Promoters
RGD ID:6819776
Promoter ID:MM_KWN:5660
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000092167,   NM_029928_PTPRB
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610115,738,431 - 115,738,931 (+)MPROMDB
RGD ID:8673294
Promoter ID:EPDNEW_M14678
Type:initiation region
Name:Ptprb_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, B ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810116,301,463 - 116,301,523EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97809 AgrOrtholog
Ensembl Genes ENSMUSG00000020154 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000089805 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000151821 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092167 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000218553 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPRJ_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19263 UniProtKB/Swiss-Prot
MGD MGI:97809 ENTREZGENE
NCBI Gene 19263 ENTREZGENE
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTP_tm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprb PhenoGen
PRINTS PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RICIN_B_LECTIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P7W3 ENTREZGENE, UniProtKB/TrEMBL
  B2RU80 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TS01_MOUSE UniProtKB/TrEMBL
  Q64497_MOUSE UniProtKB/TrEMBL
  Q80VN7_MOUSE UniProtKB/TrEMBL
  Q9CX77_MOUSE UniProtKB/TrEMBL
  Q9JJ07_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UGZ7 UniProtKB/Swiss-Prot
  Q8CIW2 UniProtKB/Swiss-Prot