Cln3 (CLN3 lysosomal/endosomal transmembrane protein, battenin) - Rat Genome Database

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Gene: Cln3 (CLN3 lysosomal/endosomal transmembrane protein, battenin) Mus musculus
Analyze
Symbol: Cln3
Name: CLN3 lysosomal/endosomal transmembrane protein, battenin
RGD ID: 1552285
MGI Page MGI
Description: Enables calcium-dependent protein binding activity. Involved in several processes, including modulation of chemical synaptic transmission; regulation of vesicle-mediated transport; and vacuole organization. Acts upstream of or within several processes, including autophagosome maturation; regulation of filopodium assembly; and regulation of protein metabolic process. Located in several cellular components, including endosome; trans-Golgi network; and vacuole. Is expressed in several structures, including alimentary system; interstitium of the testis; nervous system; sensory organ; and thymus. Used to study neuronal ceroid lipofuscinosis 3. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 3. Orthologous to human CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI323623; batt; battenin; ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,170,571 - 126,184,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,170,379 - 126,184,989 (-)EnsemblGRCm39 Ensembl
GRCm387126,571,207 - 126,585,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,571,207 - 126,585,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,714,914 - 133,727,794 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,362,548 - 126,374,368 (-)NCBIMGSCv36mm8
Celera7126,395,665 - 126,433,408 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (IMP)
action potential  (IMP)
amino acid transport  (IMP)
amyloid precursor protein catabolic process  (ISO,ISS)
associative learning  (IMP)
autophagosome maturation  (IMP)
autophagosome-lysosome fusion  (IMP)
blood vessel endothelial cell migration  (IMP)
endocytosis  (IMP)
establishment of localization in cell  (IMP)
glycerophospholipid biosynthetic process  (ISO,ISS)
glycolipid transport  (ISO,ISS)
Golgi to lysosome transport  (ISO,ISS)
intracellular water homeostasis  (IMP)
ionotropic glutamate receptor signaling pathway  (IMP)
L-arginine transmembrane transport  (ISO,ISS)
learning or memory  (IMP)
lysosomal lumen acidification  (IBA,ISO,ISS)
lysosomal lumen pH elevation  (ISO,ISS)
lysosomal protein catabolic process  (IMP)
lysosome organization  (IBA,IMP)
macroautophagy  (IMP)
membrane organization  (IMP)
negative regulation of apoptotic process  (IMP,ISO,ISS)
negative regulation of catalytic activity  (IMP)
negative regulation of neuron apoptotic process  (IDA)
negative regulation of proteolysis  (IMP)
neuromuscular process controlling balance  (IMP)
phagosome-lysosome docking  (IMP)
phagosome-lysosome fusion  (IMP)
plasma membrane raft organization  (IMP)
positive regulation of caveolin-mediated endocytosis  (IMP)
positive regulation of Golgi to plasma membrane protein transport  (IMP)
positive regulation of pinocytosis  (IMP)
positive regulation of protein phosphorylation  (IMP)
protein localization to membrane  (IMP)
protein localization to plasma membrane  (IMP)
protein phosphorylation  (IMP)
protein processing  (IMP)
receptor-mediated endocytosis  (ISO,ISS)
regulation of arginine biosynthetic process  (IMP)
regulation of autophagosome maturation  (IMP)
regulation of autophagosome size  (IMP)
regulation of autophagy  (IMP)
regulation of cellular response to osmotic stress  (ISO,ISS)
regulation of cytoskeleton organization  (ISO,ISS)
regulation of cytosolic calcium ion concentration  (IDA)
regulation of fibroblast migration  (ISO,ISS)
regulation of filopodium assembly  (IMP)
regulation of gene expression  (ISO)
regulation of modification of synaptic structure  (IMP)
regulation of phagosome maturation  (IMP)
regulation of protein localization to plasma membrane  (IMP)
regulation of protein processing  (ISO,ISS)
regulation of short-term neuronal synaptic plasticity  (IMP)
regulation of synaptic transmission, GABAergic  (IMP)
regulation of synaptic transmission, glutamatergic  (IMP)
renal potassium excretion  (IMP)
vesicle transport along microtubule  (ISO,ISS)

Cellular Component
autolysosome  (IDA)
autophagosome  (IDA)
caveola  (ISO,ISS)
cytoplasm  (ISO,ISS)
cytoplasmic vesicle  (IDA)
cytosol  (IEA)
early endosome  (IDA,ISO,ISS)
early endosome membrane  (ISO,ISS)
endoplasmic reticulum  (ISO,ISS)
endoplasmic reticulum membrane  (ISO,ISS)
endosome  (ISO)
Golgi apparatus  (ISO,ISS)
Golgi membrane  (ISO,ISS)
Golgi stack  (ISO,ISS)
late endosome  (IDA,ISO,ISS)
late endosome membrane  (IEA)
lysosomal membrane  (ISO,ISS)
lysosome  (IBA,IDA,ISO)
membrane  (ISO,ISS)
membrane raft  (IDA,ISO,ISS)
neuron projection  (IDA,ISO,ISS)
nucleus  (ISO,ISS)
plasma membrane  (ISO,ISS)
recycling endosome  (ISO,ISS)
synaptic vesicle  (ISO,ISS)
trans-Golgi network  (IDA,ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal astrocyte morphology  (IAGP)
abnormal basal ganglion morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal brainstem morphology  (IAGP)
abnormal cell adhesion  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gait  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal hippocampus pyramidal cell morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal lysosome morphology  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal postnatal subventricular zone morphology  (IAGP)
abnormal professional antigen presenting cell morphology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina ganglion layer morphology  (IAGP)
abnormal retina inner nuclear layer morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina neuronal layer morphology  (IAGP)
astrocytosis  (IAGP)
decreased body weight  (IAGP)
decreased macrophage cytokine production  (IAGP)
decreased retina photoreceptor cell number  (IAGP)
decreased urine osmolality  (IAGP)
decreased urine potassium level  (IAGP)
gliosis  (IAGP)
impaired coordination  (IAGP)
increased blood osmolality  (IAGP)
increased circulating potassium level  (IAGP)
increased microglial cell activation  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
limb grasping  (IAGP)
polydipsia  (IAGP)
polyuria  (IAGP)
premature death  (IAGP)
retina degeneration  (IAGP)
short stride length  (IAGP)
tremors  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. A murine model for juvenile NCL: gene targeting of mouse Cln3. Greene ND, etal., Mol Genet Metab 1999 Apr;66(4):309-13.
2. Isolation and chromosomal mapping of a mouse homolog of the Batten disease gene CLN3. Lee RL, etal., Genomics 1996 Aug 1;35(3):617-9.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Targeted disruption of the Cln3 gene provides a mouse model for Batten disease. The Batten Mouse Model Consortium Mitchison HM, etal., Neurobiol Dis 1999 Oct;6(5):321-34.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. A galactosylceramide binding domain is involved in trafficking of CLN3 from Golgi to rafts via recycling endosomes. Persaud-Sawin DA, etal., Pediatr Res. 2004 Sep;56(3):449-63. Epub 2004 Jul 7.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Cross-species homology of the CLN3 gene. Taschner PE, etal., Neuropediatrics 1997 Feb;28(1):18-20.
13. Molecular screening of Batten disease: identification of a missense mutation (E295K) in the CLN3 gene. Zhong N, etal., Hum Genet 1998 Jan;102(1):57-62.
Additional References at PubMed
PMID:10191118   PMID:10349636   PMID:10440905   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11590129   PMID:11988019   PMID:12023984   PMID:12366726   PMID:12374761   PMID:12477932  
PMID:12559844   PMID:12633880   PMID:12763292   PMID:12939285   PMID:14610273   PMID:14622109   PMID:14651853   PMID:15326100   PMID:15374749   PMID:15588329   PMID:15598649   PMID:15647513  
PMID:15782199   PMID:15823567   PMID:15885820   PMID:16006136   PMID:16141072   PMID:16141073   PMID:16239221   PMID:16412658   PMID:16483786   PMID:16602821   PMID:16714284   PMID:17070688  
PMID:17189291   PMID:17617387   PMID:17855597   PMID:17868323   PMID:17931875   PMID:17962032   PMID:17962056   PMID:17963751   PMID:18287559   PMID:18317235   PMID:18621045   PMID:18678598  
PMID:18688960   PMID:18768693   PMID:18799693   PMID:19230832   PMID:19243453   PMID:19284480   PMID:19345705   PMID:19941651   PMID:20219947   PMID:20850431   PMID:20875858   PMID:21267068  
PMID:21315126   PMID:21677750   PMID:21873635   PMID:22683643   PMID:22701626   PMID:23279039   PMID:23707513   PMID:23798013   PMID:24227717   PMID:24300334   PMID:24664736   PMID:24736558  
PMID:24792215   PMID:25051496   PMID:25303899   PMID:25878248   PMID:25962910   PMID:26026925   PMID:26035843   PMID:26450516   PMID:26700800   PMID:26748992   PMID:26775238   PMID:27101989  
PMID:27453211   PMID:27508227   PMID:28042098   PMID:28165011   PMID:28963550   PMID:29135436   PMID:29660499   PMID:29780879   PMID:29873075   PMID:29964296   PMID:30042155   PMID:30086172  
PMID:30837943   PMID:31025705   PMID:31040178   PMID:31572287   PMID:31573978   PMID:31628420   PMID:32579115   PMID:32592935   PMID:32601357   PMID:32719489   PMID:33006978   PMID:34964690  
PMID:36122205   PMID:36131016   PMID:37035740   PMID:37078466   PMID:37932327   PMID:38447580  


Genomics

Comparative Map Data
Cln3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,170,571 - 126,184,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,170,379 - 126,184,989 (-)EnsemblGRCm39 Ensembl
GRCm387126,571,207 - 126,585,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,571,207 - 126,585,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,714,914 - 133,727,794 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,362,548 - 126,374,368 (-)NCBIMGSCv36mm8
Celera7126,395,665 - 126,433,408 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.16NCBI
CLN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,466,653 - 28,492,082 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,474,111 - 28,495,575 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,477,974 - 28,503,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,396,101 - 28,411,124 (-)NCBINCBI36Build 36hg18NCBI36
Build 341628,396,101 - 28,410,717NCBI
Celera1627,700,143 - 27,715,170 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1626,514,259 - 26,529,549 (-)NCBIHuRef
CHM1_11629,500,208 - 29,515,233 (-)NCBICHM1_1
T2T-CHM13v2.01628,903,667 - 28,920,379 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.01628,747,320 - 28,747,572 (-)NCBIT2T-CHM13v2.0
Cln3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,586,649 - 190,600,034 (-)NCBIGRCr8
mRatBN7.21181,156,071 - 181,169,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,156,073 - 181,167,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,507,073 - 189,518,479 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,693,161 - 196,704,568 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,360,633 - 189,371,909 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,986,384 - 197,999,726 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,986,385 - 197,997,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,965,144 - 204,978,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,713,096 - 185,724,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,862,977 - 185,874,256 (-)NCBI
Celera1178,814,090 - 178,825,369 (-)NCBICelera
Cytogenetic Map1q36NCBI
Cln3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,696,241 - 6,707,849 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,696,520 - 6,707,849 (-)NCBIChiLan1.0ChiLan1.0
LOC117978823
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,065,290 - 31,097,172 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,996,679 - 35,011,769 (+)NCBINHGRI_mPanPan1
CLN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,252,543 - 18,266,033 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,254,139 - 18,266,033 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,832,816 - 19,844,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,390,161 - 18,402,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,390,161 - 18,402,054 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,189,180 - 18,201,073 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,104,266 - 18,116,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,420,341 - 18,432,234 (+)NCBIUU_Cfam_GSD_1.0
Cln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,857,474 - 123,870,439 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,955,184 - 11,967,436 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,955,334 - 11,967,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,433,836 - 18,450,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,433,564 - 18,450,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,320,132 - 26,343,009 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,320,061 - 26,337,402 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,236,192 - 3,251,867 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cln3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,995,277 - 13,005,087 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,995,277 - 13,004,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cln3
801 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3488
Count of miRNA genes:791
Interacting mature miRNAs:1048
Transcripts:ENSMUST00000032962, ENSMUST00000084589, ENSMUST00000098036, ENSMUST00000116269, ENSMUST00000124177, ENSMUST00000125508, ENSMUST00000128049, ENSMUST00000128225, ENSMUST00000128970, ENSMUST00000134246, ENSMUST00000134406, ENSMUST00000134498, ENSMUST00000138285, ENSMUST00000139766, ENSMUST00000147086, ENSMUST00000150311, ENSMUST00000150587, ENSMUST00000150917, ENSMUST00000153790
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse

Markers in Region
AI323623  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,580,078 - 126,580,192UniSTSGRCm38
MGSCv377133,723,592 - 133,723,706UniSTSGRCm37
Cytogenetic Map7F3UniSTS
cM Map760.4UniSTS
Whitehead/MRC_RH71289.57UniSTS
U47106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,572,113 - 126,572,218UniSTSGRCm38
MGSCv377133,715,627 - 133,715,732UniSTSGRCm37
Cytogenetic Map7F3UniSTS
cM Map760.4UniSTS
Whitehead_YAC7 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE624119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U47106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U68064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U92811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032962   ⟹   ENSMUSP00000032962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,170,572 - 126,182,419 (-)Ensembl
GRCm38.p6 Ensembl7126,571,400 - 126,583,247 (-)Ensembl
Ensembl Acc Id: ENSMUST00000084589   ⟹   ENSMUSP00000081636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,170,379 - 126,184,989 (-)Ensembl
GRCm38.p6 Ensembl7126,571,207 - 126,585,817 (-)Ensembl
Ensembl Acc Id: ENSMUST00000098036   ⟹   ENSMUSP00000095644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,171,258 - 126,182,362 (-)Ensembl
GRCm38.p6 Ensembl7126,572,086 - 126,583,190 (-)Ensembl
Ensembl Acc Id: ENSMUST00000116269   ⟹   ENSMUSP00000111973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,170,572 - 126,183,452 (-)Ensembl
GRCm38.p6 Ensembl7126,571,400 - 126,584,280 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,171,294 - 126,177,035 (-)Ensembl
GRCm38.p6 Ensembl7126,572,122 - 126,577,863 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125508   ⟹   ENSMUSP00000117561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,178,581 - 126,182,695 (-)Ensembl
GRCm38.p6 Ensembl7126,579,409 - 126,583,523 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,182,494 - 126,183,958 (-)Ensembl
GRCm38.p6 Ensembl7126,583,322 - 126,584,786 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,178,383 - 126,182,398 (-)Ensembl
GRCm38.p6 Ensembl7126,579,211 - 126,583,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128970   ⟹   ENSMUSP00000114901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,178,435 - 126,183,392 (-)Ensembl
GRCm38.p6 Ensembl7126,579,263 - 126,584,220 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,179,442 - 126,182,286 (-)Ensembl
GRCm38.p6 Ensembl7126,580,270 - 126,583,114 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,180,003 - 126,182,488 (-)Ensembl
GRCm38.p6 Ensembl7126,580,831 - 126,583,316 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,180,685 - 126,182,514 (-)Ensembl
GRCm38.p6 Ensembl7126,581,513 - 126,583,342 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,171,262 - 126,174,259 (-)Ensembl
GRCm38.p6 Ensembl7126,572,090 - 126,575,087 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,171,280 - 126,171,900 (-)Ensembl
GRCm38.p6 Ensembl7126,572,108 - 126,572,728 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147086   ⟹   ENSMUSP00000114555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,180,887 - 126,182,726 (-)Ensembl
GRCm38.p6 Ensembl7126,581,715 - 126,583,554 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150311   ⟹   ENSMUSP00000116160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,180,833 - 126,183,750 (-)Ensembl
GRCm38.p6 Ensembl7126,581,661 - 126,584,578 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150587   ⟹   ENSMUSP00000118054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,180,830 - 126,182,738 (-)Ensembl
GRCm38.p6 Ensembl7126,581,658 - 126,583,566 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150917   ⟹   ENSMUSP00000138688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,178,419 - 126,182,534 (-)Ensembl
GRCm38.p6 Ensembl7126,579,247 - 126,583,362 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,177,531 - 126,183,479 (-)Ensembl
GRCm38.p6 Ensembl7126,578,359 - 126,584,307 (-)Ensembl
RefSeq Acc Id: NM_001146311   ⟹   NP_001139783
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,184,991 (-)NCBI
GRCm387126,571,207 - 126,585,817 (-)NCBI
MGSCv377133,714,914 - 133,727,794 (-)RGD
Celera7126,395,665 - 126,433,408 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001329789   ⟹   NP_001316718
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,182,398 (-)NCBI
GRCm387126,571,207 - 126,583,236 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001402715   ⟹   NP_001389644
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402716   ⟹   NP_001389645
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402717   ⟹   NP_001389646
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402718   ⟹   NP_001389647
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402719   ⟹   NP_001389648
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402720   ⟹   NP_001389649
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402721   ⟹   NP_001389650
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_001402722   ⟹   NP_001389651
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,183,815 (-)NCBI
RefSeq Acc Id: NM_009907   ⟹   NP_034037
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,170,571 - 126,182,398 (-)NCBI
GRCm387126,571,207 - 126,583,236 (-)NCBI
MGSCv377133,714,914 - 133,727,794 (-)RGD
Celera7126,395,665 - 126,433,408 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030242058   ⟹   XP_030097918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,182,751 (-)NCBI
GRCm387126,572,086 - 126,583,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152620   ⟹   XP_036008513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,183,725 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152621   ⟹   XP_036008514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,183,953 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152622   ⟹   XP_036008515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,184,553 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152623   ⟹   XP_036008516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,182,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152624   ⟹   XP_036008517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,183,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152625   ⟹   XP_036008518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,183,726 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934004
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,171,258 - 126,183,731 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001139783 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316718 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389645 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389648 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389649 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389650 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389651 (Get FASTA)   NCBI Sequence Viewer  
  NP_034037 (Get FASTA)   NCBI Sequence Viewer  
  XP_030097918 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008513 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008514 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008515 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008516 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008517 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008518 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB07595 (Get FASTA)   NCBI Sequence Viewer  
  AAB69983 (Get FASTA)   NCBI Sequence Viewer  
  AAC52957 (Get FASTA)   NCBI Sequence Viewer  
  AAH47120 (Get FASTA)   NCBI Sequence Viewer  
  AAH58753 (Get FASTA)   NCBI Sequence Viewer  
  AAH60306 (Get FASTA)   NCBI Sequence Viewer  
  AAH80759 (Get FASTA)   NCBI Sequence Viewer  
  BAC37491 (Get FASTA)   NCBI Sequence Viewer  
  EDL17389 (Get FASTA)   NCBI Sequence Viewer  
  EDL17390 (Get FASTA)   NCBI Sequence Viewer  
  EDL17391 (Get FASTA)   NCBI Sequence Viewer  
  EDL17392 (Get FASTA)   NCBI Sequence Viewer  
  EDL17393 (Get FASTA)   NCBI Sequence Viewer  
  EDL17394 (Get FASTA)   NCBI Sequence Viewer  
  EDL17395 (Get FASTA)   NCBI Sequence Viewer  
  EDL17396 (Get FASTA)   NCBI Sequence Viewer  
  EDL17397 (Get FASTA)   NCBI Sequence Viewer  
  EDL17398 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000032962
  ENSMUSP00000032962.5
  ENSMUSP00000081636
  ENSMUSP00000081636.5
  ENSMUSP00000095644
  ENSMUSP00000095644.3
  ENSMUSP00000111973
  ENSMUSP00000111973.3
  ENSMUSP00000114555.2
  ENSMUSP00000114901.2
  ENSMUSP00000116160.2
  ENSMUSP00000117561.2
  ENSMUSP00000118054.2
  ENSMUSP00000138688.2
GenBank Protein Q61124 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034037   ⟸   NM_009907
- Peptide Label: isoform 1
- UniProtKB: O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q61124 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139783   ⟸   NM_001146311
- Peptide Label: isoform 1
- UniProtKB: O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q61124 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001316718   ⟸   NM_001329789
- Peptide Label: isoform 2
- UniProtKB: Q6PAH4 (UniProtKB/TrEMBL),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030097918   ⟸   XM_030242058
- Peptide Label: isoform X3
Ensembl Acc Id: ENSMUSP00000118054   ⟸   ENSMUST00000150587
Ensembl Acc Id: ENSMUSP00000138688   ⟸   ENSMUST00000150917
Ensembl Acc Id: ENSMUSP00000032962   ⟸   ENSMUST00000032962
Ensembl Acc Id: ENSMUSP00000116160   ⟸   ENSMUST00000150311
Ensembl Acc Id: ENSMUSP00000117561   ⟸   ENSMUST00000125508
Ensembl Acc Id: ENSMUSP00000081636   ⟸   ENSMUST00000084589
Ensembl Acc Id: ENSMUSP00000114555   ⟸   ENSMUST00000147086
Ensembl Acc Id: ENSMUSP00000114901   ⟸   ENSMUST00000128970
Ensembl Acc Id: ENSMUSP00000095644   ⟸   ENSMUST00000098036
Ensembl Acc Id: ENSMUSP00000111973   ⟸   ENSMUST00000116269
RefSeq Acc Id: XP_036008515   ⟸   XM_036152622
- Peptide Label: isoform X1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008514   ⟸   XM_036152621
- Peptide Label: isoform X1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008518   ⟸   XM_036152625
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036008513   ⟸   XM_036152620
- Peptide Label: isoform X1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008517   ⟸   XM_036152624
- Peptide Label: isoform X2
- UniProtKB: Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008516   ⟸   XM_036152623
- Peptide Label: isoform X1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389644   ⟸   NM_001402715
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389648   ⟸   NM_001402719
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389646   ⟸   NM_001402717
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389649   ⟸   NM_001402720
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389647   ⟸   NM_001402718
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389650   ⟸   NM_001402721
- Peptide Label: isoform 2
- UniProtKB: Q6PAH4 (UniProtKB/TrEMBL),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389645   ⟸   NM_001402716
- Peptide Label: isoform 1
- UniProtKB: Q61124 (UniProtKB/Swiss-Prot),   O35934 (UniProtKB/Swiss-Prot),   P70400 (UniProtKB/Swiss-Prot),   Q8C5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389651   ⟸   NM_001402722
- Peptide Label: isoform 2
- UniProtKB: Q6PAH4 (UniProtKB/TrEMBL),   Q8C5B1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61124-F1-model_v2 AlphaFold Q61124 1-438 view protein structure

Promoters
RGD ID:8665551
Promoter ID:EPDNEW_M10807
Type:initiation region
Name:Cln3_2
Description:Mus musculus ceroid lipofuscinosis, neuronal 3, juvenile (Batten,Spielmeyer-Vogt disease) , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10808  EPDNEW_M10809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,583,221 - 126,583,281EPDNEW
RGD ID:8665553
Promoter ID:EPDNEW_M10808
Type:initiation region
Name:Cln3_1
Description:Mus musculus ceroid lipofuscinosis, neuronal 3, juvenile (Batten,Spielmeyer-Vogt disease) , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10807  EPDNEW_M10809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,583,362 - 126,583,422EPDNEW
RGD ID:8665555
Promoter ID:EPDNEW_M10809
Type:initiation region
Name:Cln3_3
Description:Mus musculus ceroid lipofuscinosis, neuronal 3, juvenile (Batten,Spielmeyer-Vogt disease) , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10807  EPDNEW_M10808  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,584,390 - 126,584,450EPDNEW
RGD ID:6840853
Promoter ID:MM_KWN:52678
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:OTTMUST00000047452
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,715,916 - 133,717,187 (-)MPROMDB
RGD ID:6840854
Promoter ID:MM_KWN:52679
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000047453
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,718,666 - 133,719,367 (-)MPROMDB
RGD ID:6840851
Promoter ID:MM_KWN:52680
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000047440
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,721,266 - 133,722,102 (-)MPROMDB
RGD ID:6840855
Promoter ID:MM_KWN:52681
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000032962,   ENSMUST00000106380,   ENSMUST00000116269,   OTTMUST00000047444,   OTTMUST00000047445,   OTTMUST00000047446,   OTTMUST00000047447,   OTTMUST00000047448,   OTTMUST00000047449,   OTTMUST00000047450,   OTTMUST00000047451,   UC009JRY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,726,466 - 133,726,992 (-)MPROMDB
RGD ID:6840881
Promoter ID:MM_KWN:52682
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001146311,   OTTMUST00000047439,   OTTMUST00000047441,   OTTMUST00000047442,   OTTMUST00000047443,   OTTMUST00000072962,   OTTMUST00000072963,   OTTMUST00000072964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,727,086 - 133,728,517 (-)MPROMDB
RGD ID:6840852
Promoter ID:MM_KWN:52683
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:ENSMUST00000084589
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,728,964 - 133,729,464 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107537 AgrOrtholog
Ensembl Genes ENSMUSG00000030720 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032962 ENTREZGENE
  ENSMUST00000032962.11 UniProtKB/Swiss-Prot
  ENSMUST00000084589 ENTREZGENE
  ENSMUST00000084589.11 UniProtKB/Swiss-Prot
  ENSMUST00000098036 ENTREZGENE
  ENSMUST00000098036.9 UniProtKB/TrEMBL
  ENSMUST00000116269 ENTREZGENE
  ENSMUST00000116269.9 UniProtKB/Swiss-Prot
  ENSMUST00000125508.8 UniProtKB/TrEMBL
  ENSMUST00000128970.8 UniProtKB/TrEMBL
  ENSMUST00000147086.2 UniProtKB/TrEMBL
  ENSMUST00000150311.8 UniProtKB/TrEMBL
  ENSMUST00000150587.8 UniProtKB/TrEMBL
  ENSMUST00000150917.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Battenin_disease_Cln3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Battenin_disease_Cln3_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12752 UniProtKB/Swiss-Prot
MGD MGI:107537 ENTREZGENE
NCBI Gene 12752 ENTREZGENE
PANTHER BATTENIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10981 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CLN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cln3 PhenoGen
PIRSF CLN3_BTN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS BATTENIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CLN3_MOUSE UniProtKB/Swiss-Prot
  D3YUU4_MOUSE UniProtKB/TrEMBL
  D3YVA8_MOUSE UniProtKB/TrEMBL
  D3YZN0_MOUSE UniProtKB/TrEMBL
  D3Z448_MOUSE UniProtKB/TrEMBL
  D3Z6L5_MOUSE UniProtKB/TrEMBL
  O35934 ENTREZGENE
  P70400 ENTREZGENE
  Q61124 ENTREZGENE
  Q6PAH4 ENTREZGENE, UniProtKB/TrEMBL
  Q811D1_MOUSE UniProtKB/TrEMBL
  Q8C5B1 ENTREZGENE, UniProtKB/TrEMBL
  S4R2L1_MOUSE UniProtKB/TrEMBL
UniProt Secondary O35934 UniProtKB/Swiss-Prot
  P70400 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Cln3  CLN3 lysosomal/endosomal transmembrane protein, battenin  Cln3  ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)  Symbol and/or name change 5135510 APPROVED