Tmem184c (transmembrane protein 184C) - Rat Genome Database
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Gene: Tmem184c (transmembrane protein 184C) Mus musculus
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Symbol: Tmem184c
Name: transmembrane protein 184C
RGD ID: 1552265
MGI Page MGI
Description: Predicted to have transporter activity. Predicted to be involved in transport. Predicted to localize to integral component of membrane. Is expressed in incisor; nervous system; and olfactory epithelium. Orthologous to human TMEM184C (transmembrane protein 184C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; Aroclor 1254.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 8430433H16Rik; AI645453; AL033298; BC004056; MGC8158; Tmem34; transmembrane protein 34
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39878,322,607 - 78,337,343 (-)NCBIGRCm39mm39
GRCm38877,595,978 - 77,610,714 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl877,595,982 - 77,610,698 (-)EnsemblGRCm38mm10GRCm38
MGSCv37880,119,877 - 80,134,552 (-)NCBIGRCm37mm9NCBIm37
MGSCv36880,492,054 - 80,506,693 (-)NCBImm8
Celera881,886,688 - 81,901,354 (-)NCBICelera
Cytogenetic Map8C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15582152   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:19521500  
PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Tmem184c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39878,322,607 - 78,337,343 (-)NCBIGRCm39mm39
GRCm38877,595,978 - 77,610,714 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl877,595,982 - 77,610,698 (-)EnsemblGRCm38mm10GRCm38
MGSCv37880,119,877 - 80,134,552 (-)NCBIGRCm37mm9NCBIm37
MGSCv36880,492,054 - 80,506,693 (-)NCBImm8
Celera881,886,688 - 81,901,354 (-)NCBICelera
Cytogenetic Map8C1NCBI
TMEM184C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4147,617,386 - 147,672,044 (+)EnsemblGRCh38hg38GRCh38
GRCh384147,617,371 - 147,637,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374148,538,539 - 148,556,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364148,758,046 - 148,776,120 (+)NCBINCBI36hg18NCBI36
Build 344148,896,200 - 148,914,275NCBI
Celera4145,859,644 - 145,877,781 (+)NCBI
Cytogenetic Map4q31.23NCBI
HuRef4144,265,653 - 144,283,790 (+)NCBIHuRef
CHM1_14148,516,948 - 148,535,084 (+)NCBICHM1_1
Tmem184c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01934,041,128 - 34,057,165 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1934,041,219 - 34,057,159 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01944,923,134 - 44,938,607 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41932,158,361 - 32,174,009 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11932,163,186 - 32,178,891 (+)NCBI
Celera1929,826,892 - 29,842,819 (+)NCBICelera
Cytogenetic Map19q11NCBI
Tmem184c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,191,818 - 3,208,845 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,191,833 - 3,212,267 (+)NCBIChiLan1.0ChiLan1.0
TMEM184C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14151,611,162 - 151,629,099 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4151,611,162 - 151,665,508 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04139,955,785 - 139,975,738 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM184C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1545,955,802 - 45,979,616 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11545,955,521 - 45,979,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TMEM184C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl881,084,639 - 81,140,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1881,115,140 - 81,140,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2886,231,328 - 86,247,037 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM184C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1794,114,222 - 94,133,888 (+)NCBI
ChlSab1.1 Ensembl794,114,784 - 94,137,316 (+)Ensembl
Tmem184c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004625006240,377 - 261,533 (-)NCBI

Position Markers
AI645453  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38877,596,076 - 77,596,209UniSTSGRCm38
MGSCv37880,119,975 - 80,120,108UniSTSGRCm37
Celera881,886,786 - 81,886,919UniSTS
Cytogenetic Map8C1UniSTS
Whitehead/MRC_RH8830.33UniSTS
UniSTS:235934  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38877,596,135 - 77,596,374UniSTSGRCm38
MGSCv37880,120,034 - 80,120,273UniSTSGRCm37
Celera881,886,845 - 81,887,085UniSTS
Cytogenetic Map8C1UniSTS
D8Ertd769e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38877,609,507 - 77,609,748UniSTSGRCm38
MGSCv37880,133,406 - 80,133,647UniSTSGRCm37
Celera881,900,208 - 81,900,449UniSTS
Cytogenetic Map8C1UniSTS
cM Map835.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:253
Count of miRNA genes:227
Interacting mature miRNAs:243
Transcripts:ENSMUST00000034030, ENSMUST00000141202, ENSMUST00000152168
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034030   ⟹   ENSMUSP00000034030
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl877,595,982 - 77,610,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141202   ⟹   ENSMUSP00000120041
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl877,606,363 - 77,610,668 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152168   ⟹   ENSMUSP00000114463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl877,602,866 - 77,610,698 (-)Ensembl
RefSeq Acc Id: NM_001364445   ⟹   NP_001351374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39878,322,607 - 78,337,343 (-)NCBI
GRCm38877,595,978 - 77,610,714 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145599   ⟹   NP_663574
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39878,322,607 - 78,337,282 (-)NCBI
GRCm38877,595,978 - 77,610,653 (-)NCBI
MGSCv37880,119,877 - 80,134,552 (-)RGD
Celera881,886,688 - 81,901,354 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001351374 (Get FASTA)   NCBI Sequence Viewer  
  NP_663574 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC28273 (Get FASTA)   NCBI Sequence Viewer  
  BAE37668 (Get FASTA)   NCBI Sequence Viewer  
  EDL10848 (Get FASTA)   NCBI Sequence Viewer  
  Q3TPR7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_663574   ⟸   NM_145599
- Peptide Label: isoform 1
- UniProtKB: Q3TPR7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351374   ⟸   NM_001364445
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000034030   ⟸   ENSMUST00000034030
RefSeq Acc Id: ENSMUSP00000114463   ⟸   ENSMUST00000152168
RefSeq Acc Id: ENSMUSP00000120041   ⟸   ENSMUST00000141202

Promoters
RGD ID:8667521
Promoter ID:EPDNEW_M11792
Type:multiple initiation site
Name:Tmem184c_1
Description:Mus musculus transmembrane protein 184C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38877,610,624 - 77,610,684EPDNEW
RGD ID:6842612
Promoter ID:MM_KWN:54922
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109904,   NM_145599,   OTTMUST00000059807,   OTTMUST00000059808,   OTTMUST00000059823
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36880,134,374 - 80,134,874 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384562 AgrOrtholog
Ensembl Genes ENSMUSG00000031617 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034030 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114463 UniProtKB/TrEMBL
  ENSMUSP00000120041 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034030 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000141202 UniProtKB/TrEMBL
  ENSMUST00000152168 UniProtKB/TrEMBL
InterPro Ostalpha/TMEM184C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:234463 UniProtKB/Swiss-Prot
MGD MGI:2384562 ENTREZGENE
NCBI Gene 234463 ENTREZGENE
PANTHER PTHR23423 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Solute_trans_a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem184c PhenoGen
UniGene Mm.273578 ENTREZGENE
  Mm.449857 ENTREZGENE
UniProt D3YVG4_MOUSE UniProtKB/TrEMBL
  D3YWM0_MOUSE UniProtKB/TrEMBL
  Q3TPR7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CCD2 UniProtKB/Swiss-Prot
  Q99KQ7 UniProtKB/Swiss-Prot