Rpl18a (ribosomal protein L18A) - Rat Genome Database

Name: Rpl18a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rpl18a (ribosomal protein L18A) Mus musculus

Analyze

Symbol:

Rpl18a

Name:

ribosomal protein L18A

RGD ID:

1552187

MGI Page

MGI

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Orthologous to human RPL18A (ribosomal protein L18a).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2510019J09Rik; 60S ribosomal protein L18a

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL18A (ribosomal protein L18a)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rpl18a (ribosomal protein L18A)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rpl18a (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL18A (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL18A (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl18a (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL18A (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL18A (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl18a (ribosomal protein L18a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rpl18a (ribosomal protein L18A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Homo sapiens (human):	RPL18A (ribosomal protein L18a)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	rpl18a (ribosomal protein L18a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	rpl-20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Saccharomyces cerevisiae (baker's yeast):	RPL20A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	RpL18A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Related Pseudogenes:

Gm14847 Gm15427 Gm17541 Gm18128 Gm5654 Gm7043 Rpl18-ps1 Rpl18a-ps1 Rpl18a-ps2 Rpl18a-ps3 Rpl18a-ps4

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,347,366 - 71,350,087 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	71,347,366 - 71,350,056 (-)	Ensembl
GRCm38	8	70,894,722 - 70,897,443 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,894,722 - 70,897,412 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,418,621 - 73,421,342 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,824,368 - 73,826,387 (-)	NCBI			mm8
Celera	8	73,456,025 - 73,458,747 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol use disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3H-1,2-dithiole-3-thione (ISO)

ammonium chloride (ISO)

aristolochic acid (ISO)

arsenous acid (ISO)

bexarotene (ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chloropicrin (ISO)

Cuprizon (ISO)

cylindrospermopsin (EXP)

diarsenic trioxide (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (ISO)

enzyme inhibitor (ISO)

fipronil (ISO)

flutamide (ISO)

folic acid (EXP)

glafenine (ISO)

haloperidol (ISO)

hydralazine (ISO)

ivermectin (ISO)

Monobutylphthalate (EXP)

nefazodone (ISO)

nimesulide (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

rotenone (ISO)

sodium dichromate (ISO)

sodium fluoride (EXP)

stigmasterol (EXP)

streptozocin (ISO)

tolcapone (ISO)

trichloroethene (ISO)

triptonide (EXP)

valproic acid (ISO)

vanadyl sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoplasmic translation (ISO)

response to antineoplastic agent (ISO)

translation (IEA)

Cellular Component

cytosol (TAS)

cytosolic large ribosomal subunit (IBA,IPI,ISO)

cytosolic ribosome (ISO)

polysomal ribosome (ISO)

postsynaptic density (EXP,IDA,ISO)

ribosome (ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated


1.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	MGD data from the GO Consortium
4.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	RGD automated import pipeline for gene-chemical interactions
6.	Sommer W, etal., Mol Psychiatry. 2001 Jan;6(1):103-8; 5.

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12904583	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21529712
PMID:21677750	PMID:21873635	PMID:23665500	PMID:24457600	PMID:25211037	PMID:25901680	PMID:26336360	PMID:26584622	PMID:28378742	PMID:29518331	PMID:30457570	PMID:30550785
PMID:30562941	PMID:31138677	PMID:32098917	PMID:32325033	PMID:32434143	PMID:34133714	PMID:34242585

Genomics

Comparative Map Data

Rpl18a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,347,366 - 71,350,087 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	71,347,366 - 71,350,056 (-)	Ensembl
GRCm38	8	70,894,722 - 70,897,443 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,894,722 - 70,897,412 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,418,621 - 73,421,342 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,824,368 - 73,826,387 (-)	NCBI			mm8
Celera	8	73,456,025 - 73,458,747 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

RPL18A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	17,859,910 - 17,864,153 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	17,859,910 - 17,863,319 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	17,970,719 - 17,974,128 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,831,727 - 17,835,124 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	17,831,730 - 17,835,124	NCBI
Celera	19	17,872,445 - 17,875,838 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,536,059 - 17,539,505 (+)	NCBI		HuRef
CHM1_1	19	17,970,422 - 17,973,868 (+)	NCBI		CHM1_1

Rpl18a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	18,542,572 - 18,544,578 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	16	18,542,566 - 18,545,546 (+)	Ensembl
Rnor_6.0	16	20,293,277 - 20,295,283 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,293,229 - 20,295,294 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,150,821 - 20,152,827 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,042,063 - 19,044,069 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	19,042,060 - 19,044,067 (+)	NCBI
Celera	16	18,735,212 - 18,737,218 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Rpl18a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	3,384,209 - 3,387,743 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	3,385,056 - 3,387,743 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPL18A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	18,315,535 - 18,318,978 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	18,315,535 - 18,318,978 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	17,341,788 - 17,345,278 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RPL18A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,036,543 - 45,040,009 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,036,510 - 45,039,935 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	44,948,492 - 44,952,001 (-)	NCBI
ROS_Cfam_1.0	20	45,521,261 - 45,524,770 (-)	NCBI
ROS_Cfam_1.0 Ensembl	20	45,519,522 - 45,524,668 (-)	Ensembl
UMICH_Zoey_3.1	20	44,758,115 - 44,761,624 (-)	NCBI
UNSW_CanFamBas_1.0	20	45,168,389 - 45,171,898 (-)	NCBI
UU_Cfam_GSD_1.0	20	45,444,343 - 45,447,861 (-)	NCBI

Rpl18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,643,098 - 203,648,946 (-)	NCBI
SpeTri2.0	NW_004936596	3,194,952 - 3,198,020 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL18A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,890,796 - 59,897,024 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	59,892,788 - 59,906,242 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,462,228 - 59,465,636 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL18A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	16,335,899 - 16,339,446 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	6	16,335,857 - 16,339,620 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666074	3,047,961 - 3,051,518 (-)	NCBI	Vero_WHO_p1.0

Rpl18a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	1,395,752 - 1,398,595 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D14S105E

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	95,498,994 - 95,499,077	UniSTS	GRCm38
GRCm38	1	60,901,271 - 60,901,354	UniSTS	GRCm38
MGSCv37	1	60,958,115 - 60,958,198	UniSTS	GRCm37
MGSCv37	1	97,395,571 - 97,395,654	UniSTS	GRCm37
Celera	1	98,357,470 - 98,357,553	UniSTS
Celera	1	61,416,287 - 61,416,370	UniSTS
Cytogenetic Map	1	C2	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Cytogenetic Map	1	D	UniSTS
cM Map	1	26.2	UniSTS

RH125499

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	7	B1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
cM Map	1	26.2	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	280
Count of miRNA genes:	235
Interacting mature miRNAs:	253
Transcripts:	ENSMUST00000054220
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_029751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC019302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC024609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ042325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000054220 ⟹ ENSMUSP00000058368

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,347,366 - 71,350,056 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,894,722 - 70,897,412 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212019

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,023 - 71,350,042 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,379 - 70,897,398 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212129 ⟹ ENSMUSP00000148723

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,023 - 71,350,044 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,379 - 70,897,400 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212378 ⟹ ENSMUSP00000148743

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,088 - 71,350,043 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,444 - 70,897,399 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212494 ⟹ ENSMUSP00000148665

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,043 - 71,350,056 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,399 - 70,897,412 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212709 ⟹ ENSMUSP00000148529

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,027 - 71,349,927 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,383 - 70,897,283 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212796 ⟹ ENSMUSP00000148671

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,023 - 71,350,040 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,379 - 70,897,396 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000213053 ⟹ ENSMUSP00000148281

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,348,059 - 71,350,039 (-)	Ensembl
GRCm38.p6 Ensembl	8	70,895,415 - 70,897,395 (-)	Ensembl

RefSeq Acc Id:

NM_029751 ⟹ NP_084027

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,347,366 - 71,350,087 (-)	NCBI
GRCm38	8	70,894,722 - 70,897,443 (-)	ENTREZGENE
MGSCv37	8	73,418,621 - 73,421,342 (-)	RGD
Celera	8	73,456,025 - 73,458,747 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

ATGGTGAGAGCCTGCGCGAAAGACAACACTTCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGT
GCCATGAAGGCCTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGCTGCTTGCCAACCCCAA
AATGCCACACACCACCACTGTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTC
CCGCTTCTGGTACTTTGTGTCACAGCTGAAGAAGATGAAGAAGTCATCCGGGGAAATTGTGTAC
TGCGGACAGGTGTTTGAGAAGTCACCCCTGCGTGTGAAGAACTTTGGCATCTGGCTGCGCTATG
ACTCCCGCAGTGGCACACACAACATGTATCGGGAGTACAGGGACCTGACCACTGCTGGTGCAGT
CACACAGTGCTACCGAGACATGGGTGCCCGACACCGTGCCCGTGCCCACTCCATCCAGATCATG
AAGGTGGAAGAGATTGCAGCTGGCAAGTGCCGCCGGCCAGCTGTCAAGCAGTTCCACGACTCCA
AGATCAAATTCCCACTGCCCCACCGTGTGTTGCGGCGCCAGCACAAGCCACGCTTCACCACCAA
GAGGCCCAACACCTTCTTCTAGACACAGAGACCCACTGAATAAAAACTTGAGACTGTCCTTGCT
TGTTTGCTTCTATGTCCCTGGAGAGGTCCCAGTTGGTCCCGTCCCTAACAACATGCTAGCCCTG
CTCACCTGCCTGTCAGCCTTGCTCAGTGGCATCTTTCCATAGGTGTGTATCCCCTTAGATTAGC
TTCAGCCCCACTACGATTTGTCTAGGACATAGCCTGAGCCCTGCCTGTGACACTGAGGGGTAGC
AGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTCAGGCCTAAGAATTCCAGACATGACTATAAT
CCAAGCCTGGGGACCTGGTTGAGCTTTTTATCCTGCTGGCTCTAAGCTTCAGCTAGGTGGAAAT
GAGGCCAGCCAAGCCCCACAGTGAGCTTGCAAGCTTTAGATGGGGACAGGGTTACGCTTTGGTG
AATGATGGAGGAAACATGGGGGTTCCTTTTGTTGGGTGCAGCCAGCACGGCATCATCATGGTGC
CCAATCTTGAAAGGGCACAGGCCTGAAGCTTCCTGGGACTGTTCTGTCACAGGGAGGAACCTAC
TGCAGTTGCCTACAATTGCTACCTCTGAGGGACTTGCCTCTGGCCCCTTGTAGACATTTCCATG
TCTACACATGGCCCAGAGTACTTTCAGGGATAGCAATGTGTGAATGGCACTTAGAAGATAACAT
GTGAAAGCCAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_084027	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH24609	(Get FASTA)	NCBI Sequence Viewer
	AAH37146	(Get FASTA)	NCBI Sequence Viewer
	BAB27304	(Get FASTA)	NCBI Sequence Viewer
	BAE27248	(Get FASTA)	NCBI Sequence Viewer
	BAE36645	(Get FASTA)	NCBI Sequence Viewer
	BAE36696	(Get FASTA)	NCBI Sequence Viewer
	BAE40206	(Get FASTA)	NCBI Sequence Viewer
	EDL28889	(Get FASTA)	NCBI Sequence Viewer
	P62717	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_084027 ⟸ NM_029751
- UniProtKB:	P62717 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYC GQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF hide sequence

RefSeq Acc Id:

ENSMUSP00000058368 ⟸ ENSMUST00000054220

RefSeq Acc Id:

ENSMUSP00000148281 ⟸ ENSMUST00000213053

RefSeq Acc Id:

ENSMUSP00000148665 ⟸ ENSMUST00000212494

RefSeq Acc Id:

ENSMUSP00000148529 ⟸ ENSMUST00000212709

RefSeq Acc Id:

ENSMUSP00000148671 ⟸ ENSMUST00000212796

RefSeq Acc Id:

ENSMUSP00000148723 ⟸ ENSMUST00000212129

RefSeq Acc Id:

ENSMUSP00000148743 ⟸ ENSMUST00000212378

Protein Domains

Ribosomal_L18A

Promoters

RGD ID:

8667371

Promoter ID:

EPDNEW_M11716

Type:

initiation region

Name:

Rpl18a_1

Description:

Mus musculus ribosomal protein L18A , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,897,415 - 70,897,475	EPDNEW

RGD ID:

6843684

Promoter ID:

MM_KWN:54757

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_029751, UC009MCB.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	73,420,976 - 73,422,202 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1924058	AgrOrtholog
Ensembl Genes	ENSMUSG00000045128	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000058368	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000148281	UniProtKB/TrEMBL
	ENSMUSP00000148529	UniProtKB/TrEMBL
	ENSMUSP00000148665	UniProtKB/TrEMBL
	ENSMUSP00000148671	UniProtKB/TrEMBL
	ENSMUSP00000148723	UniProtKB/TrEMBL
	ENSMUSP00000148743	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000054220	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000212129	UniProtKB/TrEMBL
	ENSMUST00000212378	UniProtKB/TrEMBL
	ENSMUST00000212494	UniProtKB/TrEMBL
	ENSMUST00000212709	UniProtKB/TrEMBL
	ENSMUST00000212796	UniProtKB/TrEMBL
	ENSMUST00000213053	UniProtKB/TrEMBL
InterPro	50S_L18Ae/Ribosomal_L18a/L20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L18a//L18Ae/LX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L18a/L20_eukaryotes	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:76808	UniProtKB/Swiss-Prot
MGD	MGI:1924058	ENTREZGENE
NCBI Gene	76808	ENTREZGENE
PANTHER	PTHR10052	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosomal_L18A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpl18a	PhenoGen
PIRSF	Ribosomal_L18a	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1D5RLA0_MOUSE	UniProtKB/TrEMBL
	A0A1D5RLW5_MOUSE	UniProtKB/TrEMBL
	A0A1D5RM79_MOUSE	UniProtKB/TrEMBL
	A0A1D5RM85_MOUSE	UniProtKB/TrEMBL
	A0A1D5RMC7_MOUSE	UniProtKB/TrEMBL
	A0A1D5RME4_MOUSE	UniProtKB/TrEMBL
	P62717	ENTREZGENE
	Q05CK2_MOUSE	UniProtKB/TrEMBL
	Q3THJ0_MOUSE	UniProtKB/TrEMBL
	RL18A_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	P11249	UniProtKB/Swiss-Prot
	Q3TSN0	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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