Rpl18a (ribosomal protein L18A) - Rat Genome Database
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Gene: Rpl18a (ribosomal protein L18A) Mus musculus
Analyze
Symbol: Rpl18a
Name: ribosomal protein L18A
RGD ID: 1552187
MGI Page MGI
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Localizes to postsynaptic density. Orthologous to human RPL18A (ribosomal protein L18a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2510019J09Rik; 60S ribosomal protein L18a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14847   Gm15427   Gm17541   Gm18128   Gm5654   Gm7043   Rpl18-ps1   Rpl18a-ps1   Rpl18a-ps2   Rpl18a-ps3   Rpl18a-ps4  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,347,366 - 71,350,087 (-)NCBIGRCm39mm39
GRCm38870,894,722 - 70,897,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,894,722 - 70,897,412 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,418,621 - 73,421,342 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,824,368 - 73,826,387 (-)NCBImm8
Celera873,456,025 - 73,458,747 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21529712   PMID:21677750  
PMID:21873635   PMID:23665500   PMID:24457600   PMID:25211037   PMID:26336360   PMID:26584622   PMID:28378742   PMID:29518331   PMID:30457570   PMID:30562941   PMID:31138677   PMID:32098917  
PMID:32325033  


Genomics

Comparative Map Data
Rpl18a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,347,366 - 71,350,087 (-)NCBIGRCm39mm39
GRCm38870,894,722 - 70,897,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,894,722 - 70,897,412 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,418,621 - 73,421,342 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,824,368 - 73,826,387 (-)NCBImm8
Celera873,456,025 - 73,458,747 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
RPL18A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,859,910 - 17,864,153 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,859,910 - 17,863,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,970,687 - 17,974,133 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,831,727 - 17,835,124 (+)NCBINCBI36hg18NCBI36
Build 341917,831,730 - 17,835,124NCBI
Celera1917,872,445 - 17,875,838 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,536,059 - 17,539,505 (+)NCBIHuRef
CHM1_11917,970,422 - 17,973,868 (+)NCBICHM1_1
Rpl18a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,293,277 - 20,295,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,293,229 - 20,295,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,150,821 - 20,152,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,042,063 - 19,044,069 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,042,060 - 19,044,067 (+)NCBI
Celera1618,735,212 - 18,737,218 (+)NCBICelera
Cytogenetic Map16p14NCBI
Rpl18a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,384,209 - 3,387,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,385,056 - 3,387,743 (-)NCBIChiLan1.0ChiLan1.0
RPL18A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,315,535 - 18,318,978 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,315,535 - 18,318,978 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,341,788 - 17,345,278 (+)NCBIMhudiblu_PPA_v0panPan3
RPL18A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,036,543 - 45,040,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rpl18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,194,952 - 3,198,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL18A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,890,796 - 59,897,024 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,892,788 - 59,906,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,462,228 - 59,465,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL18A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl616,335,857 - 16,339,620 (+)Ensembl
ChlSab1.1616,335,899 - 16,339,446 (+)NCBI
Rpl18a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,395,752 - 1,398,595 (+)NCBI

Position Markers
D14S105E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38195,498,994 - 95,499,077UniSTSGRCm38
GRCm38160,901,271 - 60,901,354UniSTSGRCm38
MGSCv37160,958,115 - 60,958,198UniSTSGRCm37
MGSCv37197,395,571 - 97,395,654UniSTSGRCm37
Celera198,357,470 - 98,357,553UniSTS
Celera161,416,287 - 61,416,370UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map1DUniSTS
cM Map126.2UniSTS
RH125499  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B1UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map126.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:280
Count of miRNA genes:235
Interacting mature miRNAs:253
Transcripts:ENSMUST00000054220
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000054220   ⟹   ENSMUSP00000058368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,894,722 - 70,897,412 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212019
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,379 - 70,897,398 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212129   ⟹   ENSMUSP00000148723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,379 - 70,897,400 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212378   ⟹   ENSMUSP00000148743
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,444 - 70,897,399 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212494   ⟹   ENSMUSP00000148665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,399 - 70,897,412 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212709   ⟹   ENSMUSP00000148529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,383 - 70,897,283 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212796   ⟹   ENSMUSP00000148671
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,379 - 70,897,396 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213053   ⟹   ENSMUSP00000148281
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,895,415 - 70,897,395 (-)Ensembl
RefSeq Acc Id: NM_029751   ⟹   NP_084027
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,347,366 - 71,350,087 (-)NCBI
GRCm38870,894,722 - 70,897,443 (-)ENTREZGENE
MGSCv37873,418,621 - 73,421,342 (-)RGD
Celera873,456,025 - 73,458,747 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084027   ⟸   NM_029751
- UniProtKB: P62717 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000058368   ⟸   ENSMUST00000054220
RefSeq Acc Id: ENSMUSP00000148281   ⟸   ENSMUST00000213053
RefSeq Acc Id: ENSMUSP00000148665   ⟸   ENSMUST00000212494
RefSeq Acc Id: ENSMUSP00000148529   ⟸   ENSMUST00000212709
RefSeq Acc Id: ENSMUSP00000148671   ⟸   ENSMUST00000212796
RefSeq Acc Id: ENSMUSP00000148723   ⟸   ENSMUST00000212129
RefSeq Acc Id: ENSMUSP00000148743   ⟸   ENSMUST00000212378
Protein Domains
Ribosomal_L18A

Promoters
RGD ID:8667371
Promoter ID:EPDNEW_M11716
Type:initiation region
Name:Rpl18a_1
Description:Mus musculus ribosomal protein L18A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,897,415 - 70,897,475EPDNEW
RGD ID:6843684
Promoter ID:MM_KWN:54757
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_029751,   UC009MCB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,420,976 - 73,422,202 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924058 AgrOrtholog
Ensembl Genes ENSMUSG00000045128 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000058368 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148281 UniProtKB/TrEMBL
  ENSMUSP00000148529 UniProtKB/TrEMBL
  ENSMUSP00000148665 UniProtKB/TrEMBL
  ENSMUSP00000148671 UniProtKB/TrEMBL
  ENSMUSP00000148723 UniProtKB/TrEMBL
  ENSMUSP00000148743 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054220 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212129 UniProtKB/TrEMBL
  ENSMUST00000212378 UniProtKB/TrEMBL
  ENSMUST00000212494 UniProtKB/TrEMBL
  ENSMUST00000212709 UniProtKB/TrEMBL
  ENSMUST00000212796 UniProtKB/TrEMBL
  ENSMUST00000213053 UniProtKB/TrEMBL
InterPro 50S_L18Ae/Ribosomal_L18a/L20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L18a//L18Ae/LX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L18a/L20_eukaryotes UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76808 UniProtKB/Swiss-Prot
MGD MGI:1924058 ENTREZGENE
NCBI Gene 76808 ENTREZGENE
PANTHER PTHR10052 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L18A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl18a PhenoGen
PIRSF Ribosomal_L18a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.379251 ENTREZGENE
  Mm.431334 ENTREZGENE
UniProt A0A1D5RLA0_MOUSE UniProtKB/TrEMBL
  A0A1D5RLW5_MOUSE UniProtKB/TrEMBL
  A0A1D5RM79_MOUSE UniProtKB/TrEMBL
  A0A1D5RM85_MOUSE UniProtKB/TrEMBL
  A0A1D5RMC7_MOUSE UniProtKB/TrEMBL
  A0A1D5RME4_MOUSE UniProtKB/TrEMBL
  P62717 ENTREZGENE
  Q05CK2_MOUSE UniProtKB/TrEMBL
  Q3THJ0_MOUSE UniProtKB/TrEMBL
  RL18A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P11249 UniProtKB/Swiss-Prot
  Q3TSN0 UniProtKB/Swiss-Prot