Srek1 (splicing regulatory glutamine/lysine-rich protein 1) - Rat Genome Database

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Gene: Srek1 (splicing regulatory glutamine/lysine-rich protein 1) Mus musculus
Analyze
Symbol: Srek1
Name: splicing regulatory glutamine/lysine-rich protein 1
RGD ID: 1552123
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of spliceosomal complex. Is expressed in central nervous system and sensory organ. Orthologous to human SREK1 (splicing regulatory glutamic acid and lysine rich protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8430401B01; AI450757; AI462342; AL1182; serine-arginine-rich-splicing regulatory protein 86; serine/arginine-rich splicing factor 12; serine/arginine-rich-splicing regulatory protein 86; Sfr; Sfrs12; splicing factor, arginine/serine-rich 12; SR; SRr; SRrp508; SRrp86; Srsf12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913103,873,291 - 103,911,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13103,875,856 - 103,911,116 (-)EnsemblGRCm39 Ensembl
GRCm3813103,738,565 - 103,774,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13103,739,348 - 103,774,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713104,531,695 - 104,554,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613104,861,997 - 104,884,964 (-)NCBIMGSCv36mm8
Celera13108,143,950 - 108,166,676 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15033168   PMID:15489334   PMID:16033648  
PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:26206133   PMID:31162944  


Genomics

Comparative Map Data
Srek1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913103,873,291 - 103,911,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13103,875,856 - 103,911,116 (-)EnsemblGRCm39 Ensembl
GRCm3813103,738,565 - 103,774,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13103,739,348 - 103,774,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713104,531,695 - 104,554,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613104,861,997 - 104,884,964 (-)NCBIMGSCv36mm8
Celera13108,143,950 - 108,166,676 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.16NCBI
SREK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38566,144,300 - 66,183,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl566,139,971 - 66,183,615 (+)EnsemblGRCh38hg38GRCh38
GRCh37565,440,128 - 65,479,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36565,475,841 - 65,512,472 (+)NCBINCBI36Build 36hg18NCBI36
Build 34565,489,710 - 65,512,395NCBI
Celera562,438,135 - 62,474,766 (+)NCBICelera
Cytogenetic Map5q12.3NCBI
HuRef562,397,593 - 62,436,975 (+)NCBIHuRef
CHM1_1565,440,155 - 65,479,577 (+)NCBICHM1_1
T2T-CHM13v2.0566,965,512 - 67,004,823 (+)NCBIT2T-CHM13v2.0
Srek1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8236,583,412 - 36,618,978 (-)NCBIGRCr8
mRatBN7.2234,849,548 - 34,885,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl234,852,458 - 34,884,972 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx241,974,185 - 41,993,119 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,032,876 - 40,051,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0234,874,333 - 34,893,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0233,806,035 - 33,841,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl233,809,807 - 33,841,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0252,935,275 - 52,970,575 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4234,690,996 - 34,710,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1234,611,364 - 34,630,501 (+)NCBI
Celera230,833,959 - 30,852,836 (-)NCBICelera
Cytogenetic Map2q13NCBI
Srek1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554462,908,587 - 2,947,312 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554462,908,587 - 2,946,966 (-)NCBIChiLan1.0ChiLan1.0
SREK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2447,745,359 - 47,783,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1545,899,214 - 45,937,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0547,808,086 - 47,866,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1549,382,815 - 49,420,912 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl549,382,798 - 49,420,912 (-)Ensemblpanpan1.1panPan2
SREK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,761,727 - 51,807,124 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,761,763 - 51,802,694 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl252,252,970 - 52,296,028 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBIUU_Cfam_GSD_1.0
Srek1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213194,110,789 - 194,153,448 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364803,050,063 - 3,090,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364803,050,063 - 3,089,947 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SREK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1644,578,783 - 44,620,094 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11644,578,531 - 44,621,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21647,921,725 - 47,956,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SREK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1462,338,417 - 62,376,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604910,988,753 - 11,027,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srek1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248153,645,968 - 3,682,836 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248153,646,520 - 3,682,844 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srek1
1182 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:600
Count of miRNA genes:345
Interacting mature miRNAs:420
Transcripts:ENSMUST00000074616
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
25394543Skmw79_mskeletal muscle weight 79, soleus (mouse)13103286625107663775Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse

Markers in Region
Sfrs12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D1UniSTS
cM Map1356.16UniSTS
cM Map13 UniSTS
AI450757  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813103,741,661 - 103,741,897UniSTSGRCm38
MGSCv3713104,531,741 - 104,531,977UniSTSGRCm37
Celera13108,143,996 - 108,144,232UniSTS
Cytogenetic Map13D1UniSTS
Whitehead/MRC_RH13909.04UniSTS
UniSTS:237101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813103,745,074 - 103,745,165UniSTSGRCm38
MGSCv3713104,535,154 - 104,535,245UniSTSGRCm37
Celera13108,147,402 - 108,147,493UniSTS
Cytogenetic Map13D1UniSTS
AI462342  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813103,743,257 - 103,743,349UniSTSGRCm38
MGSCv3713104,533,337 - 104,533,429UniSTSGRCm37
Celera13108,145,585 - 108,145,677UniSTS
Cytogenetic Map13D1UniSTS
Whitehead/MRC_RH13909.04UniSTS
SHGC-33131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813103,752,473 - 103,752,509UniSTSGRCm38
MGSCv3713104,542,553 - 104,542,589UniSTSGRCm37
Celera13108,154,683 - 108,154,719UniSTS
Cytogenetic Map13D1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001426496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL118220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000074616   ⟹   ENSMUSP00000074196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,878,120 - 103,911,116 (-)Ensembl
GRCm38.p6 Ensembl13103,741,612 - 103,774,608 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,894,796 - 103,904,676 (-)Ensembl
GRCm38.p6 Ensembl13103,758,288 - 103,768,168 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,880,119 - 103,885,634 (-)Ensembl
GRCm38.p6 Ensembl13103,743,611 - 103,749,126 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210489   ⟹   ENSMUSP00000147737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,875,856 - 103,901,090 (-)Ensembl
GRCm38.p6 Ensembl13103,739,348 - 103,764,582 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,888,976 - 103,903,116 (-)Ensembl
GRCm38.p6 Ensembl13103,752,468 - 103,766,608 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210836   ⟹   ENSMUSP00000147868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,889,176 - 103,901,541 (-)Ensembl
GRCm38.p6 Ensembl13103,752,668 - 103,765,033 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,889,161 - 103,890,172 (-)Ensembl
GRCm38.p6 Ensembl13103,752,653 - 103,753,664 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,903,344 - 103,911,114 (-)Ensembl
GRCm38.p6 Ensembl13103,766,836 - 103,774,606 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211322   ⟹   ENSMUSP00000148039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,889,051 - 103,910,601 (-)Ensembl
GRCm38.p6 Ensembl13103,752,543 - 103,774,093 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13103,881,432 - 103,905,856 (-)Ensembl
GRCm38.p6 Ensembl13103,744,924 - 103,769,348 (-)Ensembl
RefSeq Acc Id: NM_001361085   ⟹   NP_001348014
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
GRCm3813103,741,612 - 103,774,608 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001426493   ⟹   NP_001413422
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
RefSeq Acc Id: NM_001426494   ⟹   NP_001413423
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
RefSeq Acc Id: NM_001426495   ⟹   NP_001413424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
RefSeq Acc Id: NM_001426496   ⟹   NP_001413425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
RefSeq Acc Id: NM_172592   ⟹   NP_766180
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,901,011 (-)NCBI
GRCm3813103,741,612 - 103,764,582 (-)NCBI
MGSCv3713104,531,695 - 104,554,662 (-)RGD
Celera13108,143,950 - 108,166,676 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_189738
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,873,291 - 103,911,047 (-)NCBI
RefSeq Acc Id: XM_006517607   ⟹   XP_006517670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,880,440 - 103,905,818 (-)NCBI
GRCm3813103,738,565 - 103,769,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517608   ⟹   XP_006517671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,875,119 - 103,905,817 (-)NCBI
GRCm3813103,738,565 - 103,769,305 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315498   ⟹   XP_017170987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,875,119 - 103,905,817 (-)NCBI
GRCm3813103,738,565 - 103,769,305 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158020   ⟹   XP_036013913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,880,440 - 103,911,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158021   ⟹   XP_036013914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,880,440 - 103,911,054 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158022   ⟹   XP_036013915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,880,440 - 103,910,945 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158023   ⟹   XP_036013916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,880,440 - 103,905,818 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158024   ⟹   XP_036013917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913103,875,119 - 103,910,945 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001348014 (Get FASTA)   NCBI Sequence Viewer  
  NP_001413422 (Get FASTA)   NCBI Sequence Viewer  
  NP_001413423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001413424 (Get FASTA)   NCBI Sequence Viewer  
  NP_001413425 (Get FASTA)   NCBI Sequence Viewer  
  NP_766180 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517670 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517671 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170987 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013913 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013914 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013915 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013916 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013917 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH63761 (Get FASTA)   NCBI Sequence Viewer  
  AAH70460 (Get FASTA)   NCBI Sequence Viewer  
  BAC28243 (Get FASTA)   NCBI Sequence Viewer  
  BAC29709 (Get FASTA)   NCBI Sequence Viewer  
  BAC30314 (Get FASTA)   NCBI Sequence Viewer  
  BAC31767 (Get FASTA)   NCBI Sequence Viewer  
  BAC34905 (Get FASTA)   NCBI Sequence Viewer  
  EDL18510 (Get FASTA)   NCBI Sequence Viewer  
  EDL18511 (Get FASTA)   NCBI Sequence Viewer  
  EDL18512 (Get FASTA)   NCBI Sequence Viewer  
  EDL18513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000074196
  ENSMUSP00000074196.7
  ENSMUSP00000147737
  ENSMUSP00000147737.2
  ENSMUSP00000147868.2
  ENSMUSP00000148039.2
GenBank Protein Q8BZX4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_766180   ⟸   NM_172592
- Peptide Label: isoform 2
- UniProtKB: Q8BYK0 (UniProtKB/Swiss-Prot),   Q8BWK7 (UniProtKB/Swiss-Prot),   Q8BLM8 (UniProtKB/Swiss-Prot),   Q8BYZ4 (UniProtKB/Swiss-Prot),   Q8BZX4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517670   ⟸   XM_006517607
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006517671   ⟸   XM_006517608
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017170987   ⟸   XM_017315498
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001348014   ⟸   NM_001361085
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000074196   ⟸   ENSMUST00000074616
RefSeq Acc Id: ENSMUSP00000148039   ⟸   ENSMUST00000211322
RefSeq Acc Id: ENSMUSP00000147868   ⟸   ENSMUST00000210836
RefSeq Acc Id: ENSMUSP00000147737   ⟸   ENSMUST00000210489
RefSeq Acc Id: XP_036013917   ⟸   XM_036158024
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036013913   ⟸   XM_036158020
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013914   ⟸   XM_036158021
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013915   ⟸   XM_036158022
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013916   ⟸   XM_036158023
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001413422   ⟸   NM_001426493
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001413425   ⟸   NM_001426496
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001413424   ⟸   NM_001426495
- Peptide Label: isoform 5
- UniProtKB: Q8BZX4 (UniProtKB/Swiss-Prot),   Q8BYZ4 (UniProtKB/Swiss-Prot),   Q8BYK0 (UniProtKB/Swiss-Prot),   Q8BWK7 (UniProtKB/Swiss-Prot),   Q8BLM8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001413423   ⟸   NM_001426494
- Peptide Label: isoform 4
- UniProtKB: Q8BZX4 (UniProtKB/Swiss-Prot),   Q8BYZ4 (UniProtKB/Swiss-Prot),   Q8BYK0 (UniProtKB/Swiss-Prot),   Q8BWK7 (UniProtKB/Swiss-Prot),   Q8BLM8 (UniProtKB/Swiss-Prot)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BZX4-F1-model_v2 AlphaFold Q8BZX4 1-494 view protein structure

Promoters
RGD ID:8681206
Promoter ID:EPDNEW_M18634
Type:single initiation site
Name:Srek1_1
Description:Mus musculus splicing regulatory glutamine/lysine-rich protein1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18635  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813103,764,503 - 103,764,563EPDNEW
RGD ID:8681208
Promoter ID:EPDNEW_M18635
Type:single initiation site
Name:Srek1_2
Description:Mus musculus splicing regulatory glutamine/lysine-rich protein1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18634  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813103,768,456 - 103,768,516EPDNEW
RGD ID:6824392
Promoter ID:MM_KWN:15127
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_172592
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613104,553,756 - 104,554,256 (-)MPROMDB
RGD ID:6824393
Promoter ID:MM_KWN:15129
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109322,   UC007RSJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613104,564,241 - 104,564,862 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145245 AgrOrtholog
Ensembl Genes ENSMUSG00000032621 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074616 ENTREZGENE
  ENSMUST00000074616.7 UniProtKB/Swiss-Prot
  ENSMUST00000210489 ENTREZGENE
  ENSMUST00000210489.2 UniProtKB/Swiss-Prot
  ENSMUST00000210836.2 UniProtKB/TrEMBL
  ENSMUST00000211322.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SREK1_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:218543 UniProtKB/Swiss-Prot
MGD MGI:2145245 ENTREZGENE
NCBI Gene 218543 ENTREZGENE
PANTHER SERINE/ARGININE-RICH SPLICING FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srek1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GSB4_MOUSE UniProtKB/TrEMBL
  A0A1B0GSR3_MOUSE UniProtKB/TrEMBL
  Q6P3Z1_MOUSE UniProtKB/TrEMBL
  Q8BLM8 ENTREZGENE
  Q8BWK7 ENTREZGENE
  Q8BYK0 ENTREZGENE
  Q8BYZ4 ENTREZGENE
  Q8BZX4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BLM8 UniProtKB/Swiss-Prot
  Q8BWK7 UniProtKB/Swiss-Prot
  Q8BYK0 UniProtKB/Swiss-Prot
  Q8BYZ4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Srek1  splicing regulatory glutamine/lysine-rich protein 1  Sfrs12  splicing factor, arginine/serine-rich 12  Symbol and/or name change 5135510 APPROVED