Dtd2 (D-tyrosyl-tRNA deacylase 2) - Rat Genome Database

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Gene: Dtd2 (D-tyrosyl-tRNA deacylase 2) Mus musculus
Analyze
Symbol: Dtd2
Name: D-tyrosyl-tRNA deacylase 2
RGD ID: 1552090
MGI Page MGI
Description: Enables Ala-tRNA(Thr) hydrolase activity and D-tyrosyl-tRNA(Tyr) deacylase activity. Involved in aminoacyl-tRNA metabolism involved in translational fidelity. Predicted to be active in cytoplasm. Orthologous to human DTD2 (D-aminoacyl-tRNA deacylase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930578F06Rik; 6530401N04Rik; animalia-specifc tRNA deacylase; animalia-specific tRNA deacylase; ATD; B830049N13Rik; D-aminoacyl-tRNA deacylase 2; L-alanyl-tRNA deacylase; probable D-tyrosyl-tRNA(Tyr) deacylase 2; putative D-tyrosyl-tRNA deacylase 2; putative D-tyrosyl-tRNA(Tyr) deacylase 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,035,089 - 52,053,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,035,095 - 52,053,284 (-)EnsemblGRCm39 Ensembl
GRCm381251,988,306 - 52,006,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,988,312 - 52,006,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv371253,098,494 - 53,107,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,919,127 - 52,928,121 (-)NCBIMGSCv36mm8
MGSCv361246,437,199 - 46,446,197 (-)NCBIMGSCv36mm8
Celera1253,303,768 - 53,313,203 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:29410408  


Genomics

Comparative Map Data
Dtd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,035,089 - 52,053,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,035,095 - 52,053,284 (-)EnsemblGRCm39 Ensembl
GRCm381251,988,306 - 52,006,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,988,312 - 52,006,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv371253,098,494 - 53,107,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,919,127 - 52,928,121 (-)NCBIMGSCv36mm8
MGSCv361246,437,199 - 46,446,197 (-)NCBIMGSCv36mm8
Celera1253,303,768 - 53,313,203 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.11NCBI
DTD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,446,036 - 31,457,506 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1431,446,036 - 31,457,506 (-)EnsemblGRCh38hg38GRCh38
GRCh371431,915,242 - 31,926,712 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,984,993 - 30,996,431 (-)NCBINCBI36Build 36hg18NCBI36
Build 341430,985,947 - 30,996,382NCBI
Celera1411,780,548 - 11,791,986 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,032,751 - 12,044,192 (-)NCBIHuRef
CHM1_11431,914,338 - 31,925,783 (-)NCBICHM1_1
T2T-CHM13v2.01425,643,623 - 25,655,096 (-)NCBIT2T-CHM13v2.0
Dtd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,185,496 - 75,191,774 (-)NCBIGRCr8
mRatBN7.2669,450,146 - 69,456,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,449,614 - 69,456,427 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,875,365 - 69,880,971 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,182,004 - 70,187,610 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,621,529 - 69,627,135 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,781,229 - 72,786,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,780,543 - 72,786,830 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0682,343,041 - 82,348,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4672,153,048 - 72,158,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1672,154,945 - 72,161,761 (-)NCBI
Celera668,326,582 - 68,332,188 (-)NCBICelera
Cytogenetic Map6q23NCBI
Dtd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,151,779 - 29,160,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540929,151,779 - 29,160,734 (+)NCBIChiLan1.0ChiLan1.0
DTD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,775,279 - 32,786,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11431,992,742 - 32,003,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,222,744 - 12,234,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,419,810 - 30,431,296 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1430,419,810 - 30,431,296 (-)Ensemblpanpan1.1panPan2
DTD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,694,999 - 10,706,155 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,696,505 - 10,706,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,557,501 - 10,568,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,797,336 - 10,808,515 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,798,842 - 10,808,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,479,232 - 10,490,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,555,980 - 10,567,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,841,065 - 10,852,122 (-)NCBIUU_Cfam_GSD_1.0
Dtd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,542,103 - 42,551,302 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364946,047,857 - 6,057,185 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DTD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,106,224 - 68,116,986 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1768,105,268 - 68,118,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2772,987,051 - 72,997,913 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Dtd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820859,511 - 868,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624820859,554 - 870,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dtd2
705 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1026
Count of miRNA genes:530
Interacting mature miRNAs:636
Transcripts:ENSMUST00000021339, ENSMUST00000085404
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY069987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY423647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021339   ⟹   ENSMUSP00000021339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,044,290 - 52,053,284 (-)Ensembl
GRCm38.p6 Ensembl1251,997,507 - 52,006,501 (-)Ensembl
RefSeq Acc Id: ENSMUST00000085404   ⟹   ENSMUSP00000082525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1252,035,095 - 52,053,284 (-)Ensembl
GRCm38.p6 Ensembl1251,988,312 - 52,006,501 (-)Ensembl
RefSeq Acc Id: NM_001347404   ⟹   NP_001334333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,035,089 - 52,053,290 (-)NCBI
GRCm381251,988,306 - 52,006,507 (-)NCBI
Sequence:
RefSeq Acc Id: NM_029545   ⟹   NP_083821
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,044,290 - 52,053,290 (-)NCBI
GRCm381251,997,507 - 52,006,507 (-)NCBI
MGSCv371253,098,494 - 53,107,488 (-)RGD
Celera1253,303,768 - 53,313,203 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036157504   ⟹   XP_036013397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,035,092 - 52,053,290 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157505   ⟹   XP_036013398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391252,035,092 - 52,053,290 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083821   ⟸   NM_029545
- Peptide Label: isoform 2
- UniProtKB: Q9D363 (UniProtKB/Swiss-Prot),   Q9D4Q5 (UniProtKB/Swiss-Prot),   Q8BHA3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001334333   ⟸   NM_001347404
- Peptide Label: isoform 1
- UniProtKB: Q8BHA3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000082525   ⟸   ENSMUST00000085404
RefSeq Acc Id: ENSMUSP00000021339   ⟸   ENSMUST00000021339
RefSeq Acc Id: XP_036013397   ⟸   XM_036157504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013398   ⟸   XM_036157505
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHA3-F1-model_v2 AlphaFold Q8BHA3 1-168 view protein structure

Promoters
RGD ID:8678254
Promoter ID:EPDNEW_M17158
Type:multiple initiation site
Name:Dtd2_1
Description:Mus musculus D-tyrosyl-tRNA deacylase 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381252,006,501 - 52,006,561EPDNEW
RGD ID:6823374
Promoter ID:MM_KWN:11620
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_029545,   OTTMUST00000068546
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361253,107,164 - 53,107,664 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923485 AgrOrtholog
Ensembl Genes ENSMUSG00000020956 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021339 ENTREZGENE
  ENSMUST00000021339.8 UniProtKB/Swiss-Prot
  ENSMUST00000085404 ENTREZGENE
  ENSMUST00000085404.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.50.80.10 UniProtKB/Swiss-Prot
InterPro Daa-tRNA_deacyls_DTD UniProtKB/Swiss-Prot
  DTD-like_sf UniProtKB/Swiss-Prot
KEGG Report mmu:328092 UniProtKB/Swiss-Prot
MGD MGI:1923485 ENTREZGENE
NCBI Gene 328092 ENTREZGENE
PANTHER D-AMINOACYL-TRNA DEACYLASE 2 UniProtKB/Swiss-Prot
  PTHR10472 UniProtKB/Swiss-Prot
Pfam Tyr_Deacylase UniProtKB/Swiss-Prot
PhenoGen Dtd2 PhenoGen
Superfamily-SCOP SSF69500 UniProtKB/Swiss-Prot
UniProt DTD2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D363 ENTREZGENE
  Q9D4Q5 ENTREZGENE
UniProt Secondary Q9D363 UniProtKB/Swiss-Prot
  Q9D4Q5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Dtd2  D-tyrosyl-tRNA deacylase 2  6530401N04Rik  RIKEN cDNA 6530401N04 gene  Symbol and/or name change 5135510 APPROVED