Syt9 (synaptotagmin IX) - Rat Genome Database

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Gene: Syt9 (synaptotagmin IX) Mus musculus
Analyze
Symbol: Syt9
Name: synaptotagmin IX
RGD ID: 1552025
MGI Page MGI
Description: Enables SNARE binding activity; identical protein binding activity; and phospholipid binding activity. Involved in calcium-dependent activation of synaptic vesicle fusion and regulation of calcium ion-dependent exocytosis. Located in dense core granule. Is active in hippocampal mossy fiber to CA3 synapse and synaptic vesicle membrane. Is expressed in several structures, including adrenal gland; gonad; liver; nervous system; and spleen. Orthologous to human SYT9 (synaptotagmin 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Sy; synaptotagmin 9; synaptotagmin V; synaptotagmin-9; sytIX
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397106,969,929 - 107,147,863 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7106,969,935 - 107,147,863 (+)EnsemblGRCm39 Ensembl
GRCm387107,370,349 - 107,548,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7107,370,728 - 107,548,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv377114,514,304 - 114,692,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367107,161,967 - 107,339,832 (+)NCBIMGSCv36mm8
Celera7107,353,714 - 107,524,578 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map756.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Conserved N-terminal cysteine motif is essential for homo- and heterodimer formation of synaptotagmins III, V, VI, and X. Fukuda M, etal., J Biol Chem 1999 Oct 29;274(44):31421-7.
2. Synaptotagmin IX regulates Ca2+-dependent secretion in PC12 cells. Fukuda M, etal., J Biol Chem. 2002 Feb 15;277(7):4601-4. Epub 2001 Dec 21.
3. Synaptotagmins bind calcium to release insulin. Gauthier BR and Wollheim CB, Am J Physiol Endocrinol Metab. 2008 Dec;295(6):E1279-86. Epub 2008 Aug 19.
4. Adenovirus-mediated silencing of synaptotagmin 9 inhibits Ca2+-dependent insulin secretion in islets. Iezzi M, etal., FEBS Lett. 2005 Sep 26;579(23):5241-6.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12860971   PMID:15350218   PMID:16141072   PMID:16141073   PMID:16284245   PMID:16407767  
PMID:16602821   PMID:17431699   PMID:17521570   PMID:19906978   PMID:20847230   PMID:21085706   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26202512   PMID:26482442   PMID:28511701  
PMID:36732068   PMID:36898834   PMID:37432648   PMID:38355793  


Genomics

Comparative Map Data
Syt9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397106,969,929 - 107,147,863 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7106,969,935 - 107,147,863 (+)EnsemblGRCm39 Ensembl
GRCm387107,370,349 - 107,548,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7107,370,728 - 107,548,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv377114,514,304 - 114,692,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367107,161,967 - 107,339,832 (+)NCBIMGSCv36mm8
Celera7107,353,714 - 107,524,578 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map756.33NCBI
SYT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,238,778 - 7,469,043 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,238,778 - 7,469,043 (+)EnsemblGRCh38hg38GRCh38
GRCh37117,273,135 - 7,490,274 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,229,757 - 7,446,849 (+)NCBINCBI36Build 36hg18NCBI36
Build 34117,229,756 - 7,446,844NCBI
Celera117,392,278 - 7,609,358 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,931,552 - 7,148,808 (+)NCBIHuRef
CHM1_1117,272,108 - 7,489,194 (+)NCBICHM1_1
T2T-CHM13v2.0117,297,482 - 7,527,410 (+)NCBIT2T-CHM13v2.0
Syt9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,687,666 - 170,868,146 (+)NCBIGRCr8
mRatBN7.21161,275,882 - 161,456,384 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,275,734 - 161,455,007 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1169,545,386 - 169,723,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01176,731,378 - 176,909,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,415,608 - 169,593,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,592,703 - 171,769,780 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,592,797 - 171,769,780 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01178,591,031 - 178,768,239 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,722,168 - 164,928,937 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,817,644 - 165,024,414 (+)NCBI
Celera1159,180,385 - 159,358,526 (+)NCBICelera
Cytogenetic Map1q33NCBI
Syt9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541423,061,163 - 23,221,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541423,061,163 - 23,221,986 (+)NCBIChiLan1.0ChiLan1.0
SYT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v299,654,086 - 9,870,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,619,499 - 9,833,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0117,350,612 - 7,565,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1117,032,803 - 7,247,187 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl117,032,803 - 7,247,187 (+)Ensemblpanpan1.1panPan2
SYT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12130,985,059 - 31,123,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2130,986,521 - 31,162,414 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2130,500,261 - 30,692,179 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02131,795,334 - 31,987,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2131,737,706 - 32,027,664 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12131,067,861 - 31,259,788 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02131,230,498 - 31,422,621 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02131,526,042 - 31,718,284 (+)NCBIUU_Cfam_GSD_1.0
Syt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494754,380,287 - 54,545,088 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936841542,417 - 708,797 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936841542,211 - 706,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl92,191,765 - 2,391,921 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.192,191,757 - 2,395,157 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.292,674,959 - 2,877,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1157,375,933 - 57,587,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl157,376,232 - 57,587,368 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038155,112,373 - 155,332,222 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248178,996,893 - 9,166,331 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248178,996,880 - 9,171,226 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syt9
8384 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2111
Count of miRNA genes:608
Interacting mature miRNAs:767
Transcripts:ENSMUST00000073459, ENSMUST00000127444, ENSMUST00000130414, ENSMUST00000137663, ENSMUST00000144003
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse

Markers in Region
AW049067  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387107,548,245 - 107,548,381UniSTSGRCm38
MGSCv377114,691,759 - 114,691,895UniSTSGRCm37
Celera7107,524,168 - 107,524,304UniSTS
Cytogenetic Map7F2UniSTS
Whitehead/MRC_RH71081.63UniSTS
D7Mit262  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387107,369,820 - 107,369,927UniSTSGRCm38
MGSCv377114,513,334 - 114,513,441UniSTSGRCm37
Celera7107,352,742 - 107,352,851UniSTS
Cytogenetic Map7F2UniSTS
cM Map749.9UniSTS
Whitehead Genetic737.2UniSTS
Whitehead_YAC7 UniSTS
D7Mit324  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387107,509,644 - 107,509,736UniSTSGRCm38
MGSCv377114,653,158 - 114,653,250UniSTSGRCm37
Celera7107,485,728 - 107,485,820UniSTS
Cytogenetic Map7F2UniSTS
cM Map749.9UniSTS
Whitehead Genetic737.2UniSTS
Whitehead_YAC7 UniSTS
RH141563  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387107,548,378 - 107,548,597UniSTSGRCm38
MGSCv377114,691,892 - 114,692,111UniSTSGRCm37
Celera7107,524,301 - 107,524,520UniSTS
Cytogenetic Map7F2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000073459   ⟹   ENSMUSP00000073164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,969,997 - 107,147,863 (+)Ensembl
GRCm38.p6 Ensembl7107,370,790 - 107,548,656 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7107,103,303 - 107,147,860 (+)Ensembl
GRCm38.p6 Ensembl7107,504,096 - 107,548,653 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130414   ⟹   ENSMUSP00000122049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,969,997 - 107,147,860 (+)Ensembl
GRCm38.p6 Ensembl7107,370,790 - 107,548,653 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137663   ⟹   ENSMUSP00000117969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,969,935 - 107,035,543 (+)Ensembl
GRCm38.p6 Ensembl7107,370,728 - 107,436,336 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7107,103,269 - 107,147,860 (+)Ensembl
GRCm38.p6 Ensembl7107,504,062 - 107,548,653 (+)Ensembl
RefSeq Acc Id: NM_021889   ⟹   NP_068689
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397106,969,929 - 107,147,863 (+)NCBI
GRCm387107,370,790 - 107,548,655 (+)NCBI
MGSCv377114,514,304 - 114,692,169 (+)RGD
Celera7107,353,714 - 107,524,578 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184790
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397106,969,929 - 107,147,863 (+)NCBI
RefSeq Acc Id: NR_184791
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397106,969,929 - 107,147,863 (+)NCBI
RefSeq Acc Id: NR_184792
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397106,969,929 - 107,147,863 (+)NCBI
RefSeq Acc Id: NP_068689   ⟸   NM_021889
- UniProtKB: Q3U0R7 (UniProtKB/Swiss-Prot),   Q8C280 (UniProtKB/Swiss-Prot),   Q9R0N9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000122049   ⟸   ENSMUST00000130414
Ensembl Acc Id: ENSMUSP00000073164   ⟸   ENSMUST00000073459
Ensembl Acc Id: ENSMUSP00000117969   ⟸   ENSMUST00000137663
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0N9-F1-model_v2 AlphaFold Q9R0N9 1-491 view protein structure

Promoters
RGD ID:8665159
Promoter ID:EPDNEW_M10610
Type:initiation region
Name:Syt9_1
Description:Mus musculus synaptotagmin IX , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387107,370,722 - 107,370,782EPDNEW
RGD ID:6842149
Promoter ID:MM_KWN:52168
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:OTTMUST00000077942,   OTTMUST00000077943,   OTTMUST00000077944
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367114,513,834 - 114,514,334 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926373 AgrOrtholog
Ensembl Genes ENSMUSG00000062542 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073459 ENTREZGENE
  ENSMUST00000073459.12 UniProtKB/Swiss-Prot
  ENSMUST00000130414 ENTREZGENE
  ENSMUST00000130414.8 UniProtKB/TrEMBL
  ENSMUST00000137663.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  Synaptotagmin UniProtKB/Swiss-Prot
KEGG Report mmu:60510 UniProtKB/Swiss-Prot
MGD MGI:1926373 ENTREZGENE
NCBI Gene 60510 ENTREZGENE
PANTHER PTHR10024:SF180 UniProtKB/Swiss-Prot
  SYNAPTOTAGMIN UniProtKB/Swiss-Prot
Pfam PF00168 UniProtKB/Swiss-Prot
PhenoGen Syt9 PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot
  SYNAPTOTAGMN UniProtKB/Swiss-Prot
PROSITE PS50004 UniProtKB/Swiss-Prot
SMART SM00239 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot
UniProt D3YVX0_MOUSE UniProtKB/TrEMBL
  D6RGS5_MOUSE UniProtKB/TrEMBL
  Q3U0R7 ENTREZGENE
  Q8C280 ENTREZGENE
  Q9R0N9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U0R7 UniProtKB/Swiss-Prot
  Q8C280 UniProtKB/Swiss-Prot