Odc1 (ornithine decarboxylase, structural 1) - Rat Genome Database

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Gene: Odc1 (ornithine decarboxylase, structural 1) Mus musculus
Analyze
Symbol: Odc1
Name: ornithine decarboxylase, structural 1
RGD ID: 1551973
MGI Page MGI
Description: Enables ornithine decarboxylase activity and protein homodimerization activity. Involved in putrescine biosynthetic process from ornithine and regulation of protein catabolic process. Acts upstream of or within kidney development and positive regulation of cell population proliferation. Located in cytosol. Is expressed in several structures, including alimentary system; cardiovascular system; genitourinary system; nervous system; and sensory organ. Used to study atrichia with papular lesions. Orthologous to human ODC1 (ornithine decarboxylase 1); PARTICIPATES IN biogenic amines and polyamines metabolic pathway; polyamine metabolic pathway; putrescine metabolic pathway; INTERACTS WITH (+)-catechin; (S)-(-)-perillyl alcohol; (S)-colchicine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC103389; OD; ODC; ornithine decarboxylase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12846   Gm14785   Gm15470   Gm15645   Gm17709   Gm7278   Gm7450   Gm7993   Gm8828   Gm8836   Gm8848   Gm8853   Gm8862   Gm8872   Gm8982   Gm9115   Gm9260   Rps7-ps2  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,594,809 - 17,601,503 (+)NCBIGRCm39mm39
GRCm39 Ensembl1217,594,795 - 17,601,506 (+)Ensembl
GRCm381217,544,808 - 17,551,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,544,794 - 17,551,505 (+)EnsemblGRCm38mm10GRCm38
MGSCv371217,551,679 - 17,558,308 (+)NCBIGRCm37mm9NCBIm37
MGSCv361217,570,570 - 17,576,557 (+)NCBImm8
Celera1217,867,446 - 17,874,062 (+)NCBICelera
Cytogenetic Map12A1.1- A1.2NCBI
cM Map128.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(+)-pilocarpine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-noradrenaline  (ISO)
(S)-(-)-perillyl alcohol  (EXP)
(S)-colchicine  (EXP,ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,2-dibromoethane  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrobenzenesulfonic acid  (EXP)
2,4-dinitrotoluene  (ISO)
2,5-dihydroxybenzoic acid  (EXP)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloroperbenzoic acid  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroperoxycyclophosphamide  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-methylthio-2-oxobutanoic acid  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetaldehyde  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
alprenolol  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
aniline  (EXP)
apomorphine  (EXP)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Asimicin  (EXP)
bathocuproine disulfonic acid  (ISO)
belinostat  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzoates  (ISO)
Benzoyl peroxide  (EXP)
berberine  (ISO)
bexarotene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (EXP)
butanal  (ISO)
butyric acid  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (EXP)
calcitriol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloroform  (ISO)
chloropicrin  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (EXP,ISO)
clenbuterol  (EXP)
clobetasol  (EXP)
clofibrate  (ISO)
clofibric acid  (ISO)
clotrimazole  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cumene hydroperoxide  (EXP)
curcumin  (EXP,ISO)
cycloartenol  (EXP)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
Deguelin  (EXP,ISO)
deoxynivalenol  (EXP)
dexamethasone  (ISO)
Diallyl sulfide  (EXP)
diarsenic trioxide  (ISO)
diazepam  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzoylmethane  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (ISO)
diethyl malate  (EXP)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (ISO)
fenarimol  (ISO)
fenazaquin  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
formic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP,ISO)
gallic acid  (EXP)
gamma-hexachlorocyclohexane  (ISO)
geraniol  (EXP,ISO)
glafenine  (ISO)
glutathione  (EXP)
hexane  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroxyl  (ISO)
Iopodic acid  (ISO)
iron atom  (EXP)
iron dextran  (EXP)
iron(0)  (EXP)
iron(III) nitrilotriacetate  (ISO)
isoprenaline  (EXP)
isotretinoin  (EXP,ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
mancozeb  (EXP)
masoprocol  (EXP)
menadione  (ISO)
methapyrilene  (ISO)
methiocarb  (ISO)
methoctramine tetrahydrochloride  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
metoprolol  (EXP)
metsulfuron methyl  (ISO)
Mezerein  (EXP)
miconazole  (EXP)
mirex  (ISO)
myriocin  (ISO)
N-acetyl-beta-D-glucosamine  (ISO)
N-acetyl-D-glucosamine  (ISO)
N-acetylsphingosine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
ochratoxin A  (EXP)
organophosphorus compound  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
patulin  (EXP)
Pentagastrin  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
perillyl alcohol  (EXP)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
podophyllotoxin  (EXP)
potassium iodide  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
proanthocyanidin  (EXP)
prochloraz  (ISO)
procymidone  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
propranolol  (EXP,ISO)
prostaglandins E  (EXP)
putrescine  (EXP,ISO)
pyridaben  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (EXP,ISO)
quercitrin  (ISO)
quinpirole  (EXP)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
reserpine  (EXP,ISO)
resveratrol  (EXP,ISO)
rotenone  (EXP,ISO)
rottlerin  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
silicon dioxide  (EXP,ISO)
simazine  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
spermidine  (EXP,ISO)
spermine  (EXP,ISO)
succimer  (EXP)
sulfasalazine  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
teniposide  (ISO)
terbutaline  (ISO)
tert-butyl hydroperoxide  (EXP)
Tesaglitazar  (ISO)
testosterone  (EXP)
Testosterone propionate  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
thioacetamide  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
Trenbolone  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
Triptolide  (EXP)
troglitazone  (ISO)
urethane  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vincaleukoblastine  (EXP)
vinclozolin  (ISO)
vitamin E  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1311971   PMID:1353738   PMID:1374235   PMID:1374399   PMID:1429654   PMID:1551891   PMID:1569411   PMID:1673105   PMID:1730582   PMID:1794049   PMID:1958536   PMID:2026163  
PMID:2037305   PMID:2575591   PMID:2627199   PMID:2704626   PMID:2982844   PMID:3197454   PMID:3353375   PMID:3362685   PMID:3372502   PMID:3453893   PMID:3456155   PMID:3856848  
PMID:6330090   PMID:6587379   PMID:6598355   PMID:7478599   PMID:7488102   PMID:7509717   PMID:7578852   PMID:7671221   PMID:7702610   PMID:7733512   PMID:7755561   PMID:7780833  
PMID:7873877   PMID:7873878   PMID:8074989   PMID:8075500   PMID:8088780   PMID:8088836   PMID:8119157   PMID:8243470   PMID:8307774   PMID:8328969   PMID:8344985   PMID:8350350  
PMID:8354283   PMID:8405990   PMID:8424799   PMID:8504104   PMID:8670048   PMID:8672127   PMID:8875319   PMID:8889548   PMID:9110315   PMID:9170106   PMID:9294616   PMID:9441737  
PMID:9841492   PMID:10047785   PMID:10049357   PMID:10349636   PMID:10378276   PMID:10430664   PMID:10487519   PMID:10623504   PMID:10656920   PMID:10725249   PMID:10922068   PMID:11042159  
PMID:11059762   PMID:11076861   PMID:11217851   PMID:11241834   PMID:11331206   PMID:11348473   PMID:11485548   PMID:11507056   PMID:11513732   PMID:11687289   PMID:11782361   PMID:11944982  
PMID:11960919   PMID:12054494   PMID:12054570   PMID:12435358   PMID:12466851   PMID:12477932   PMID:12562772   PMID:12709396   PMID:12782652   PMID:14610273   PMID:14681479   PMID:15010206  
PMID:15016805   PMID:15265947   PMID:15514084   PMID:15734996   PMID:15735755   PMID:15737202   PMID:15749015   PMID:15782199   PMID:15843384   PMID:15894264   PMID:16138831   PMID:16141072  
PMID:16141073   PMID:16234506   PMID:16291796   PMID:16459331   PMID:16602821   PMID:16916800   PMID:17148758   PMID:17979831   PMID:18583422   PMID:18799693   PMID:19131104   PMID:19331812  
PMID:19449338   PMID:19465028   PMID:20085765   PMID:20478998   PMID:20685649   PMID:20844550   PMID:21267068   PMID:21505150   PMID:21873635   PMID:22730407   PMID:23061827   PMID:23300995  
PMID:23872168   PMID:24194600   PMID:24967154   PMID:25516968   PMID:27193233   PMID:27770613   PMID:28096401   PMID:28637295   PMID:29853605   PMID:30217446   PMID:30417362   PMID:32004476  
PMID:32325033   PMID:32588887   PMID:33328226   PMID:33406854   PMID:33596409   PMID:34216540  


Genomics

Comparative Map Data
Odc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,594,809 - 17,601,503 (+)NCBIGRCm39mm39
GRCm39 Ensembl1217,594,795 - 17,601,506 (+)Ensembl
GRCm381217,544,808 - 17,551,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,544,794 - 17,551,505 (+)EnsemblGRCm38mm10GRCm38
MGSCv371217,551,679 - 17,558,308 (+)NCBIGRCm37mm9NCBIm37
MGSCv361217,570,570 - 17,576,557 (+)NCBImm8
Celera1217,867,446 - 17,874,062 (+)NCBICelera
Cytogenetic Map12A1.1- A1.2NCBI
cM Map128.11NCBI
ODC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl210,439,968 - 10,448,327 (-)EnsemblGRCh38hg38GRCh38
GRCh38210,439,968 - 10,448,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37210,580,094 - 10,588,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,497,959 - 10,505,904 (-)NCBINCBI36hg18NCBI36
Build 34210,531,105 - 10,539,051NCBI
Celera210,496,293 - 10,504,232 (-)NCBI
Cytogenetic Map2p25.1NCBI
HuRef210,432,740 - 10,440,685 (-)NCBIHuRef
CHM1_1210,509,903 - 10,517,848 (-)NCBICHM1_1
Odc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2640,329,831 - 40,336,444 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl640,329,964 - 40,336,440 (+)Ensembl
Rnor_6.0642,852,529 - 42,859,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,852,683 - 42,859,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,565,188 - 52,571,773 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4641,309,211 - 41,315,796 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1641,312,265 - 41,318,665 (+)NCBI
Celera639,628,825 - 39,635,308 (+)NCBICelera
Cytogenetic Map6q16NCBI
Odc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,603,722 - 5,608,386 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,603,722 - 5,608,386 (-)NCBIChiLan1.0ChiLan1.0
ODC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A10,598,125 - 10,607,152 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,598,125 - 10,607,152 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A10,443,308 - 10,451,412 (-)NCBIMhudiblu_PPA_v0panPan3
ODC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,368,699 - 7,376,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,369,232 - 7,376,975 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,294,922 - 7,302,658 (-)NCBI
ROS_Cfam_1.0177,467,169 - 7,474,927 (-)NCBI
UMICH_Zoey_3.1177,357,671 - 7,365,425 (-)NCBI
UNSW_CanFamBas_1.0177,360,253 - 7,368,002 (-)NCBI
UU_Cfam_GSD_1.0177,374,368 - 7,382,137 (-)NCBI
Odc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,826,681 - 51,831,970 (-)NCBI
SpeTri2.0NW_0049365326,581,717 - 6,587,116 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,078,418 - 126,132,577 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,087,013 - 126,095,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ODC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,173,338 - 97,182,253 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604515,117,435 - 15,125,604 (-)NCBIVero_WHO_p1.0
Odc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248654,851,565 - 4,858,868 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
UniSTS:236810  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381217,551,113 - 17,551,312UniSTSGRCm38
GRCm38X102,723,794 - 102,723,993UniSTSGRCm38
MGSCv37X99,919,133 - 99,919,332UniSTSGRCm37
MGSCv371217,557,919 - 17,558,118UniSTSGRCm37
Celera1217,873,674 - 17,873,873UniSTS
CeleraX89,634,306 - 89,634,505UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map12A1.1UniSTS
PMC99801P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381217,547,397 - 17,547,666UniSTSGRCm38
MGSCv371217,554,203 - 17,554,472UniSTSGRCm37
Celera1217,869,971 - 17,870,240UniSTS
Cytogenetic Map12A1.1UniSTS
Odc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map7E3UniSTS
D12Nds11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381217,546,446 - 17,546,616UniSTSGRCm38
MGSCv371217,553,252 - 17,553,422UniSTSGRCm37
Celera1217,869,019 - 17,869,190UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map126.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122368579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122368579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122368579Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122368579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124612697Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124612697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127870733Mouse
4141112Tglq2a_mtriglyceride QTL 2a (mouse)Not determined12127870733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127870733Mouse
9850128Tglq5_mtriglyceride QTL 5 (mouse)Not determined12127870733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130383077Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132708755Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133380338Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1229013334290301Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12360000029700000Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12536844076984429Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12767315941673302Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12800000040000000Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12830244542302582Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12944100543441113Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
14746972Manh72_mmandible shape 72 (mouse)121056528244565282Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121057064344570810Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
4141516slwr_mslowlearner (mouse)Not determined1234247646342615Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121509733249097332Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121610000047700000Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir27ammu-miR-27a-3pMirtarbaseexternal_infoGFP reporter assay//Immunocytochemistry//MicroarraFunctional MTI19878148
Mir27ammu-miR-27a-5pMirecordsexternal_infoNANA19878148

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:208
Interacting mature miRNAs:231
Transcripts:ENSMUST00000171737
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU684749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J03733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M12330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M12331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S64539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X14205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000171737   ⟹   ENSMUSP00000128661
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,594,795 - 17,601,085 (+)Ensembl
GRCm38.p6 Ensembl1217,544,794 - 17,551,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220849
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,597,818 - 17,598,868 (+)Ensembl
GRCm38.p6 Ensembl1217,547,817 - 17,548,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220947
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,597,251 - 17,597,986 (+)Ensembl
GRCm38.p6 Ensembl1217,547,250 - 17,547,985 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,598,641 - 17,599,917 (+)Ensembl
GRCm38.p6 Ensembl1217,548,640 - 17,549,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221613   ⟹   ENSMUSP00000152363
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,597,690 - 17,601,506 (+)Ensembl
GRCm38.p6 Ensembl1217,547,689 - 17,551,505 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,597,148 - 17,597,708 (+)Ensembl
GRCm38.p6 Ensembl1217,547,147 - 17,547,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222250
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,599,459 - 17,600,078 (+)Ensembl
GRCm38.p6 Ensembl1217,549,458 - 17,550,077 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222617   ⟹   ENSMUSP00000152699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,594,973 - 17,601,078 (+)Ensembl
GRCm38.p6 Ensembl1217,544,972 - 17,551,077 (+)Ensembl
RefSeq Acc Id: NM_013614   ⟹   NP_038642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,594,874 - 17,601,503 (+)NCBI
GRCm381217,544,873 - 17,551,502 (+)NCBI
MGSCv371217,551,679 - 17,558,308 (+)RGD
Celera1217,867,446 - 17,874,062 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314990   ⟹   XP_017170479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,594,809 - 17,601,503 (+)NCBI
GRCm381217,544,808 - 17,551,502 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038642   ⟸   NM_013614
- UniProtKB: P00860 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170479   ⟸   XM_017314990
- Peptide Label: isoform X1
- UniProtKB: P00860 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152699   ⟸   ENSMUST00000222617
RefSeq Acc Id: ENSMUSP00000128661   ⟸   ENSMUST00000171737
RefSeq Acc Id: ENSMUSP00000152363   ⟸   ENSMUST00000221613
Protein Domains
Orn_Arg_deC_N   Orn_DAP_Arg_deC

Promoters
RGD ID:8677972
Promoter ID:EPDNEW_M17017
Type:initiation region
Name:Odc1_1
Description:Mus musculus ornithine decarboxylase, structural 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381217,544,972 - 17,545,032EPDNEW
RGD ID:6823241
Promoter ID:MM_KWN:11236
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_013614
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361217,551,281 - 17,551,932 (+)MPROMDB
RGD ID:6849746
Promoter ID:EP37001
Type:single initiation site
Name:MM_DCOR
Description:Ornithine decarboxylase, ODC1 or ODC gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Nuclease protection with homologous sequence ladder; Primer extension with homologous sequence ladder
Regulation:housekeeping gene; (induced by or strongly expressed in) cell proliferation
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371217,551,777 - 17,551,837EPD
MGSCv361217,551,777 - 17,551,837EPD

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97402 AgrOrtholog
Ensembl Genes ENSMUSG00000011179 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000128661 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000152363 UniProtKB/TrEMBL
  ENSMUSP00000152699 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000171737 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000221613 UniProtKB/TrEMBL
  ENSMUST00000222617 UniProtKB/TrEMBL
Gene3D-CATH 2.40.37.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ala_racemase/Decarboxylase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  De-COase2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  De-COase2_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  De-COase2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  De-COase2_pyr-phos_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orn/DAP/Arg_de-COase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orn_de-COase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLP-binding_barrel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18263 UniProtKB/Swiss-Prot
MGD MGI:97402 ENTREZGENE
NCBI Gene 18263 ENTREZGENE
PANTHER PTHR11482 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Orn_Arg_deC_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orn_DAP_Arg_deC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Odc1 PhenoGen
PRINTS ODADCRBXLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ORNDCRBXLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ODR_DC_2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ODR_DC_2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50621 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51419 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VJC5_MOUSE UniProtKB/TrEMBL
  A0A1Y7VMF9_MOUSE UniProtKB/TrEMBL
  DCOR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TM76_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q61997 UniProtKB/Swiss-Prot
  Q61998 UniProtKB/Swiss-Prot
  Q6PB87 UniProtKB/Swiss-Prot