Sypl1 (synaptophysin like 1) - Rat Genome Database

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Gene: Sypl1 (synaptophysin like 1) Mus musculus
Analyze
Symbol: Sypl1 (Ensembl: Sypl)
Name: synaptophysin like 1 (Ensembl:synaptophysin-like protein)
RGD ID: 1551812
MGI Page MGI
Description: Located in membrane and secretory granule. Is expressed in neocortex. Orthologous to human SYPL1 (synaptophysin like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI314763; AI604763; D12Ertd446; D12Ertd446e; P; Pan I; PanI; pantophysin; Pphn; synaptophysin-like protein 1; Sypl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14887   Gm4989  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,003,874 - 33,029,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1233,003,890 - 33,029,859 (+)EnsemblGRCm39 Ensembl
GRCm381232,953,855 - 32,979,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1232,953,891 - 32,979,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,638,810 - 33,664,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,539,215 - 33,562,151 (+)NCBIMGSCv36mm8
Celera1234,399,839 - 34,425,394 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Pantophysin is a ubiquitously expressed synaptophysin homologue and defines constitutive transport vesicles. Haass NK, etal., J Cell Biol 1996 Aug;134(3):731-46.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.). Pogson GH Genetics 2001 Jan;157(1):317-30.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10370136   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:27626380   PMID:30995482   PMID:37607933  


Genomics

Comparative Map Data
Sypl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,003,874 - 33,029,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1233,003,890 - 33,029,859 (+)EnsemblGRCm39 Ensembl
GRCm381232,953,855 - 32,979,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1232,953,891 - 32,979,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,638,810 - 33,664,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,539,215 - 33,562,151 (+)NCBIMGSCv36mm8
Celera1234,399,839 - 34,425,394 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.87NCBI
SYPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387106,090,505 - 106,112,576 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7106,090,505 - 106,112,589 (-)EnsemblGRCh38hg38GRCh38
GRCh377105,730,951 - 105,753,022 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367105,518,187 - 105,540,293 (-)NCBINCBI36Build 36hg18NCBI36
Build 347105,324,904 - 105,346,709NCBI
Celera7100,536,483 - 100,558,573 (-)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7100,090,269 - 100,112,533 (-)NCBIHuRef
CHM1_17105,664,455 - 105,686,718 (-)NCBICHM1_1
T2T-CHM13v2.07107,405,910 - 107,427,970 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27105,091,838 - 105,114,101 (-)NCBI
Sypl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8655,292,555 - 55,311,519 (+)NCBIGRCr8
mRatBN7.2649,565,111 - 49,585,205 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl649,565,154 - 49,585,330 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx649,867,721 - 49,886,582 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0650,182,641 - 50,201,502 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0649,619,516 - 49,638,454 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0652,265,920 - 52,286,037 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl652,265,930 - 52,285,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0661,891,950 - 61,912,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4651,284,538 - 51,303,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1651,287,663 - 51,307,100 (+)NCBI
Celera648,757,109 - 48,776,040 (+)NCBICelera
Cytogenetic Map6q16NCBI
Sypl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541010,568,594 - 10,591,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541010,571,888 - 10,590,978 (-)NCBIChiLan1.0ChiLan1.0
SYPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26142,935,536 - 142,957,769 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17191,205,504 - 191,227,737 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0798,074,940 - 98,097,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17110,802,971 - 110,824,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7110,802,978 - 110,824,735 (-)Ensemblpanpan1.1panPan2
SYPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11814,356,655 - 14,380,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1814,371,040 - 14,379,546 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1814,004,632 - 14,029,843 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01814,630,874 - 14,656,058 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1814,630,410 - 14,656,044 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11814,442,399 - 14,467,548 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01814,364,040 - 14,389,296 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01814,644,518 - 14,669,676 (+)NCBIUU_Cfam_GSD_1.0
Sypl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511856,709,824 - 56,730,539 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647917,833,605 - 17,853,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9105,918,115 - 105,986,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19105,952,898 - 105,985,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29116,645,475 - 116,678,121 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12175,005,164 - 75,024,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2175,003,465 - 75,024,758 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604228,886,351 - 28,905,937 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sypl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473923,564,981 - 23,585,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473923,564,941 - 23,585,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sypl1
1031 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1482
Count of miRNA genes:619
Interacting mature miRNAs:746
Transcripts:ENSMUST00000020885, ENSMUST00000076698, ENSMUST00000122861, ENSMUST00000129592, ENSMUST00000131562, ENSMUST00000139339
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse

Markers in Region
AI604763  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381232,977,807 - 32,977,901UniSTSGRCm38
MGSCv371233,662,672 - 33,662,766UniSTSGRCm37
Celera1234,423,699 - 34,423,793UniSTS
Cytogenetic Map12B2UniSTS
cM Map1215.0UniSTS
Whitehead/MRC_RH12314.93UniSTS
AI314763  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381232,976,424 - 32,976,554UniSTSGRCm38
MGSCv371233,661,289 - 33,661,419UniSTSGRCm37
Celera1234,422,336 - 34,422,466UniSTS
Cytogenetic Map12B2UniSTS
cM Map1215.0UniSTS
Whitehead/MRC_RH12315.03UniSTS
D12Ertd446e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381232,976,624 - 32,976,823UniSTSGRCm38
MGSCv371233,661,489 - 33,661,688UniSTSGRCm37
Celera1234,422,536 - 34,422,735UniSTS
Cytogenetic Map12B2UniSTS
cM Map1215.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB847647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020885   ⟹   ENSMUSP00000020885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,004,183 - 33,026,903 (+)Ensembl
GRCm38.p6 Ensembl1232,954,184 - 32,976,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000076698   ⟹   ENSMUSP00000075990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,003,890 - 33,029,859 (+)Ensembl
GRCm38.p6 Ensembl1232,953,891 - 32,979,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122861   ⟹   ENSMUSP00000122695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,004,246 - 33,024,151 (+)Ensembl
GRCm38.p6 Ensembl1232,954,247 - 32,974,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,004,558 - 33,017,678 (+)Ensembl
GRCm38.p6 Ensembl1232,954,559 - 32,967,679 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,015,325 - 33,020,341 (+)Ensembl
GRCm38.p6 Ensembl1232,965,326 - 32,970,342 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,015,405 - 33,019,445 (+)Ensembl
GRCm38.p6 Ensembl1232,965,406 - 32,969,446 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,015,396 - 33,025,713 (+)Ensembl
GRCm38.p6 Ensembl1232,965,397 - 32,975,714 (+)Ensembl
RefSeq Acc Id: NM_013635   ⟹   NP_038663
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,003,944 - 33,029,501 (+)NCBI
GRCm381232,953,945 - 32,979,502 (+)NCBI
MGSCv371233,638,810 - 33,664,367 (+)RGD
Celera1234,399,839 - 34,425,394 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_198710   ⟹   NP_942003
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,004,185 - 33,029,501 (+)NCBI
GRCm381232,954,186 - 32,979,502 (+)NCBI
MGSCv371233,638,810 - 33,664,367 (+)RGD
Celera1234,399,839 - 34,425,394 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011243842   ⟹   XP_011242144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,003,874 - 33,023,102 (+)NCBI
GRCm381232,953,855 - 32,973,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243843   ⟹   XP_011242145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,003,874 - 33,023,102 (+)NCBI
GRCm381232,953,855 - 32,973,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157254   ⟹   XP_036013147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,004,250 - 33,029,503 (+)NCBI
Sequence:
RefSeq Acc Id: NP_038663   ⟸   NM_013635
- Peptide Label: isoform 1
- UniProtKB: Q8BQJ1 (UniProtKB/Swiss-Prot),   Q8BQI8 (UniProtKB/Swiss-Prot),   Q8C749 (UniProtKB/Swiss-Prot),   O09117 (UniProtKB/Swiss-Prot),   Q3U4T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942003   ⟸   NM_198710
- Peptide Label: isoform 2
- UniProtKB: Q3TVX7 (UniProtKB/TrEMBL),   Q3U4T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242144   ⟸   XM_011243842
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011242145   ⟸   XM_011243843
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000020885   ⟸   ENSMUST00000020885
RefSeq Acc Id: ENSMUSP00000075990   ⟸   ENSMUST00000076698
RefSeq Acc Id: ENSMUSP00000122695   ⟸   ENSMUST00000122861
RefSeq Acc Id: XP_036013147   ⟸   XM_036157254
- Peptide Label: isoform X3
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09117-F1-model_v2 AlphaFold O09117 1-261 view protein structure

Promoters
RGD ID:8678114
Promoter ID:EPDNEW_M17088
Type:initiation region
Name:Sypl_1
Description:Mus musculus synaptophysin-like protein , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381232,954,207 - 32,954,267EPDNEW
RGD ID:6822595
Promoter ID:MM_KWN:11462
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK041289_4933406C10RIK,   OTTMUST00000068186,   OTTMUST00000068187,   OTTMUST00000068189,   OTTMUST00000068190,   UC007NIG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361233,637,471 - 33,639,607 (-)MPROMDB
RGD ID:6823462
Promoter ID:MM_KWN:11463
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Kidney
Transcripts:OTTMUST00000068188,   OTTMUST00000068191
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361233,650,104 - 33,650,604 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108081 AgrOrtholog
Ensembl Genes ENSMUSG00000020570 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020885 ENTREZGENE
  ENSMUST00000020885.13 UniProtKB/Swiss-Prot
  ENSMUST00000076698 ENTREZGENE
  ENSMUST00000076698.13 UniProtKB/Swiss-Prot
  ENSMUST00000122861.8 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptophysin/porin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19027 UniProtKB/Swiss-Prot
MGD MGI:108081 ENTREZGENE
NCBI Gene 19027 ENTREZGENE
PANTHER PTHR10306 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOPHYSIN-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sypl1 PhenoGen
PRINTS SYNAPTOPHYSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RFU9_MOUSE UniProtKB/TrEMBL
  O09117 ENTREZGENE
  Q3TVX7 ENTREZGENE, UniProtKB/TrEMBL
  Q3U4T9 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQI8 ENTREZGENE
  Q8BQJ1 ENTREZGENE
  Q8C749 ENTREZGENE
  Q8CDB7_MOUSE UniProtKB/TrEMBL
  SYPL1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BQI8 UniProtKB/Swiss-Prot
  Q8BQJ1 UniProtKB/Swiss-Prot
  Q8C749 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Sypl1  synaptophysin like 1  Sypl  synaptophysin-like protein  Symbol and/or name updated 27372883 PROVISIONAL