Atp6v1c2 (ATPase, H+ transporting, lysosomal V1 subunit C2) - Rat Genome Database

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Gene: Atp6v1c2 (ATPase, H+ transporting, lysosomal V1 subunit C2) Mus musculus
Analyze
Symbol: Atp6v1c2
Name: ATPase, H+ transporting, lysosomal V1 subunit C2
RGD ID: 1551733
MGI Page MGI
Description: Enables proton-transporting ATPase activity, rotational mechanism. Acts upstream of or within proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including alimentary system; metanephros; nervous system; nose; and respiratory system. Orthologous to human ATP6V1C2 (ATPase H+ transporting V1 subunit C2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110038G14Rik; ATPase, H+ transporting, V1 subunit C; ATPase, H+ transporting, V1 subunit C, isoform 2; V-ATPase subunit C 2; V-type proton ATPase subunit C 2; vacuolar proton pump subunit C 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,334,722 - 17,375,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,334,722 - 17,379,360 (-)EnsemblGRCm39 Ensembl
GRCm381217,284,721 - 17,325,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,284,721 - 17,329,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,291,527 - 17,331,536 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,310,201 - 17,350,192 (-)NCBIMGSCv36mm8
Celera1217,606,632 - 17,646,929 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Diversity of mouse proton-translocating ATPase: presence of multiple isoforms of the C, d and G subunits. Sun-Wada GH, etal., Gene 2003 Jan 2;302(1-2):147-53.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12947086   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16177003   PMID:16934000   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:26371508   PMID:26442671   PMID:27368196   PMID:28994389   PMID:36445537  


Genomics

Comparative Map Data
Atp6v1c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,334,722 - 17,375,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,334,722 - 17,379,360 (-)EnsemblGRCm39 Ensembl
GRCm381217,284,721 - 17,325,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,284,721 - 17,329,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,291,527 - 17,331,536 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,310,201 - 17,350,192 (-)NCBIMGSCv36mm8
Celera1217,606,632 - 17,646,929 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.06NCBI
ATP6V1C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,720,943 - 10,785,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,721,100 - 10,785,110 (+)EnsemblGRCh38hg38GRCh38
GRCh37210,861,756 - 10,925,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,779,226 - 10,842,687 (+)NCBINCBI36Build 36hg18NCBI36
Build 34210,812,420 - 10,875,832NCBI
Celera210,777,001 - 10,840,382 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,713,330 - 10,776,550 (+)NCBIHuRef
CHM1_1210,791,519 - 10,854,975 (+)NCBICHM1_1
T2T-CHM13v2.0210,750,978 - 10,815,109 (+)NCBIT2T-CHM13v2.0
Atp6v1c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,809,269 - 45,872,914 (-)NCBIGRCr8
mRatBN7.2640,080,545 - 40,144,199 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,080,547 - 40,120,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,407,983 - 40,447,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,722,678 - 40,762,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,155,927 - 40,195,380 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,585,452 - 42,632,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,585,934 - 42,630,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,307,211 - 52,351,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera639,381,677 - 39,420,442 (-)NCBICelera
Cytogenetic Map6q16NCBI
Atp6v1c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,711,235 - 5,735,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,711,235 - 5,735,081 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,734,027 - 115,825,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,737,998 - 115,829,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,689,538 - 10,783,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,874,395 - 10,936,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,872,071 - 10,936,457 (+)Ensemblpanpan1.1panPan2
ATP6V1C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,602,348 - 7,653,402 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,599,535 - 7,653,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,526,180 - 7,578,668 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,702,415 - 7,755,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,702,390 - 7,755,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,589,007 - 7,641,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,591,391 - 7,643,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,604,848 - 7,657,564 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,063,348 - 52,116,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,818,758 - 6,865,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,818,387 - 6,866,691 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,775,099 - 125,825,244 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,774,259 - 125,825,752 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,530,646 - 134,581,910 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,827,671 - 96,894,854 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,828,451 - 96,893,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,398,860 - 15,464,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,711,119 - 4,734,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v1c2
1276 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:990
Count of miRNA genes:460
Interacting mature miRNAs:527
Transcripts:ENSMUST00000020884, ENSMUST00000095820, ENSMUST00000127185, ENSMUST00000140751, ENSMUST00000143131, ENSMUST00000153090, ENSMUST00000156727
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse

Markers in Region
Atp6v1c2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12A3UniSTS
cM Map12 UniSTS
D12Mit291  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381217,290,133 - 17,290,301UniSTSGRCm38
MGSCv371217,296,939 - 17,297,107UniSTSGRCm37
Celera1217,612,016 - 17,612,192UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map121.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000020884   ⟹   ENSMUSP00000020884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,334,723 - 17,374,704 (-)Ensembl
GRCm38.p6 Ensembl1217,284,722 - 17,324,703 (-)Ensembl
RefSeq Acc Id: ENSMUST00000095820   ⟹   ENSMUSP00000093500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,334,722 - 17,374,713 (-)Ensembl
GRCm38.p6 Ensembl1217,284,721 - 17,324,712 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127185   ⟹   ENSMUSP00000118635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,358,302 - 17,374,731 (-)Ensembl
GRCm38.p6 Ensembl1217,308,301 - 17,324,730 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140751   ⟹   ENSMUSP00000123415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,334,723 - 17,374,666 (-)Ensembl
GRCm38.p6 Ensembl1217,284,722 - 17,324,665 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143131   ⟹   ENSMUSP00000117993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,358,346 - 17,379,360 (-)Ensembl
GRCm38.p6 Ensembl1217,308,345 - 17,329,359 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153090   ⟹   ENSMUSP00000119686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,347,797 - 17,379,349 (-)Ensembl
GRCm38.p6 Ensembl1217,297,796 - 17,329,348 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156727   ⟹   ENSMUSP00000117139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,334,724 - 17,358,414 (-)Ensembl
GRCm38.p6 Ensembl1217,284,723 - 17,308,413 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221129   ⟹   ENSMUSP00000152515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,334,726 - 17,374,731 (-)Ensembl
GRCm38.p6 Ensembl1217,284,725 - 17,324,730 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222103   ⟹   ENSMUSP00000152450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,347,788 - 17,374,714 (-)Ensembl
GRCm38.p6 Ensembl1217,297,787 - 17,324,713 (-)Ensembl
RefSeq Acc Id: NM_001159632   ⟹   NP_001153104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,722 - 17,374,731 (-)NCBI
GRCm381217,284,721 - 17,324,730 (-)NCBI
MGSCv371217,291,527 - 17,331,536 (-)RGD
Celera1217,606,632 - 17,646,929 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133699   ⟹   NP_598460
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,722 - 17,374,731 (-)NCBI
GRCm381217,284,721 - 17,324,730 (-)NCBI
MGSCv371217,291,527 - 17,331,536 (-)RGD
Celera1217,606,632 - 17,646,929 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515196   ⟹   XP_006515259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,375,700 (-)NCBI
GRCm381217,284,722 - 17,325,373 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515198   ⟹   XP_006515261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,375,700 (-)NCBI
GRCm381217,284,722 - 17,324,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515199   ⟹   XP_006515262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,375,700 (-)NCBI
GRCm381217,284,722 - 17,324,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315176   ⟹   XP_017170665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,350,634 (-)NCBI
GRCm381217,284,722 - 17,300,633 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246897   ⟹   XP_030102757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,361,665 (-)NCBI
GRCm381217,284,722 - 17,311,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157604   ⟹   XP_036013497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,334,723 - 17,375,700 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_598460   ⟸   NM_133699
- Peptide Label: isoform 2
- UniProtKB: Q6PHA4 (UniProtKB/Swiss-Prot),   Q99L60 (UniProtKB/Swiss-Prot),   D3Z5W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153104   ⟸   NM_001159632
- Peptide Label: isoform 1
- UniProtKB: D3Z5W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515259   ⟸   XM_006515196
- Peptide Label: isoform X1
- UniProtKB: D3Z5W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515261   ⟸   XM_006515198
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006515262   ⟸   XM_006515199
- Peptide Label: isoform X3
- UniProtKB: D3Z5W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170665   ⟸   XM_017315176
- Peptide Label: isoform X4
- UniProtKB: D3Z5W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030102757   ⟸   XM_030246897
- Peptide Label: isoform X5
- UniProtKB: D3Z5W3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000117993   ⟸   ENSMUST00000143131
RefSeq Acc Id: ENSMUSP00000152450   ⟸   ENSMUST00000222103
RefSeq Acc Id: ENSMUSP00000020884   ⟸   ENSMUST00000020884
RefSeq Acc Id: ENSMUSP00000118635   ⟸   ENSMUST00000127185
RefSeq Acc Id: ENSMUSP00000123415   ⟸   ENSMUST00000140751
RefSeq Acc Id: ENSMUSP00000093500   ⟸   ENSMUST00000095820
RefSeq Acc Id: ENSMUSP00000119686   ⟸   ENSMUST00000153090
RefSeq Acc Id: ENSMUSP00000152515   ⟸   ENSMUST00000221129
RefSeq Acc Id: ENSMUSP00000117139   ⟸   ENSMUST00000156727
RefSeq Acc Id: XP_036013497   ⟸   XM_036157604
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99L60-F1-model_v2 AlphaFold Q99L60 1-427 view protein structure

Promoters
RGD ID:8677968
Promoter ID:EPDNEW_M17015
Type:multiple initiation site
Name:Atp6v1c2_1
Description:Mus musculus ATPase, H+ transporting, lysosomal V1 subunit C2, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381217,324,730 - 17,324,790EPDNEW
RGD ID:6822763
Promoter ID:MM_KWN:11232
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_001159632,   NM_133699,   OTTMUST00000058539,   UC007NCT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361217,331,181 - 17,331,681 (-)MPROMDB
RGD ID:6822745
Promoter ID:MM_KWN:11233
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000058537,   OTTMUST00000058538
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361217,335,546 - 17,336,046 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916025 AgrOrtholog
Ensembl Genes ENSMUSG00000020566 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020884 ENTREZGENE
  ENSMUST00000020884.16 UniProtKB/Swiss-Prot
  ENSMUST00000095820 ENTREZGENE
  ENSMUST00000095820.12 UniProtKB/Swiss-Prot
  ENSMUST00000127185.8 UniProtKB/TrEMBL
  ENSMUST00000140751.8 UniProtKB/TrEMBL
  ENSMUST00000143131.2 UniProtKB/TrEMBL
  ENSMUST00000153090.8 UniProtKB/TrEMBL
  ENSMUST00000156727.8 UniProtKB/TrEMBL
  ENSMUST00000221129 ENTREZGENE
  ENSMUST00000221129.2 UniProtKB/Swiss-Prot
  ENSMUST00000222103.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  subunit c (vma5p) of the yeast v-atpase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_csu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vac_ATP_synth_c_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68775 UniProtKB/Swiss-Prot
MGD MGI:1916025 ENTREZGENE
NCBI Gene 68775 ENTREZGENE
PANTHER PTHR10137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT C 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v1c2 PhenoGen
Superfamily-SCOP SSF118203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VLG0_MOUSE UniProtKB/TrEMBL
  D3YVW5_MOUSE UniProtKB/TrEMBL
  D3YZX0_MOUSE UniProtKB/TrEMBL
  D3Z1Q7_MOUSE UniProtKB/TrEMBL
  D3Z5W3 ENTREZGENE, UniProtKB/TrEMBL
  D6RCW6_MOUSE UniProtKB/TrEMBL
  Q6PHA4 ENTREZGENE
  Q99L60 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6PHA4 UniProtKB/Swiss-Prot