Mrps18a (mitochondrial ribosomal protein S18A)

Gene: Mrps18a (mitochondrial ribosomal protein S18A) Mus musculus

Analyze

Symbol:

Mrps18a

Name:

mitochondrial ribosomal protein S18A

RGD ID:

1551643

MGI Page

MGI

Description:

Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including early conceptus; gonad; heart; liver; and pancreas epithelium. Orthologous to human MRPS18A (mitochondrial ribosomal protein S18A).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

1110004O20Rik; 28S ribosomal protein S18-3, mitochondrial; 28S ribosomal protein S18a, mitochondrial; C79712; large ribosomal subunit protein mL66; MGC66832; MRP-S18-3; MRP-S18-a; S18mt-a

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPS18A (mitochondrial ribosomal protein S18A)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Rattus norvegicus (Norway rat):	Mrps18a (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrps18a (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPS18A (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPS18A (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrps18a (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPS18A (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPS18A (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrps18a (mitochondrial ribosomal protein S18A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Mrps18a (mitochondrial ribosomal protein S18A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MRPS18A (mitochondrial ribosomal protein S18A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrps18a (mitochondrial ribosomal protein S18A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	RSM18	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	mrps-18A	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mRpS18A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,421,930 - 46,439,834 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,421,912 - 46,439,836 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,111,004 - 46,128,908 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,110,986 - 46,128,910 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,247,953 - 46,265,857 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,574,585 - 45,592,489 (+)	NCBI		MGSCv36	mm8
Celera	17	49,542,531 - 49,560,014 (+)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.86	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

infantile Refsum disease (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

choline (EXP)

clofibrate (EXP)

cobalt dichloride (ISO)

cylindrospermopsin (ISO)

doxorubicin (ISO)

folic acid (EXP)

furan (ISO)

genistein (ISO)

gentamycin (ISO)

heptanal (ISO)

hexanal (ISO)

hydralazine (ISO)

isotretinoin (ISO)

L-methionine (EXP)

lipopolysaccharide (ISO)

nickel atom (EXP)

nonanal (ISO)

octanal (ISO)

ozone (ISO)

paracetamol (ISO)

pentachlorophenol (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

phenobarbital (EXP)

potassium chromate (ISO)

propanal (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

triptonide (EXP)

tungsten (EXP)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (ISS,NAS)

translation (IBA)

Cellular Component

mitochondrial inner membrane (NAS)

mitochondrial large ribosomal subunit (ISO,NAS)

mitochondrial small ribosomal subunit (IBA,ISO,ISS)

mitochondrion (HDA,ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

small ribosomal subunit rRNA binding (IBA)

structural constituent of ribosome (IBA,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit.	Suzuki T, etal., J Biol Chem 2001 Aug 31;276(35):33181-95. Epub 2001 Jun 11.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12520002	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:18554416
PMID:18614015	PMID:20305823	PMID:21267068	PMID:21677750	PMID:21873635	PMID:25278503	PMID:27023846	PMID:32325033	PMID:32987154	PMID:37889087

Genomics

Comparative Map Data

Mrps18a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,421,930 - 46,439,834 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,421,912 - 46,439,836 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,111,004 - 46,128,908 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,110,986 - 46,128,910 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,247,953 - 46,265,857 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,574,585 - 45,592,489 (+)	NCBI		MGSCv36	mm8
Celera	17	49,542,531 - 49,560,014 (+)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.86	NCBI

MRPS18A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,671,202 - 43,687,791 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,671,202 - 43,687,791 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,638,939 - 43,655,528 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,747,020 - 43,763,506 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	43,747,019 - 43,763,506	NCBI
Celera	6	45,190,561 - 45,207,176 (-)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,357,975 - 43,367,902 (-)	NCBI		HuRef
CHM1_1	6	43,641,931 - 43,658,546 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,499,929 - 43,516,525 (-)	NCBI		T2T-CHM13v2.0

Mrps18a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,350,887 - 22,367,380 (-)	NCBI		GRCr8
mRatBN7.2	9	14,853,322 - 14,869,819 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,853,291 - 14,869,835 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,437,742 - 23,454,215 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,500,162 - 28,516,632 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,801,172 - 26,817,647 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,238,354 - 17,254,845 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,238,385 - 17,254,949 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,133,557 - 16,150,048 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	10,419,079 - 10,435,570 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	10,416,402 - 10,432,892 (-)	NCBI
Celera	9	12,600,343 - 12,616,808 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Mrps18a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,448,612 - 9,462,874 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,448,612 - 9,462,874 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPS18A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,169,474 - 58,186,105 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,039,267 - 54,055,852 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,261,336 - 43,278,022 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,550,865 - 44,567,552 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,550,865 - 44,567,552 (-)	Ensembl	panpan1.1		panPan2

MRPS18A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,106,104 - 12,122,922 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,096,568 - 12,122,997 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,132,339 - 12,149,157 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,589,873 - 12,606,689 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,589,880 - 12,606,649 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,114,923 - 12,131,738 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,201,923 - 12,218,736 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,295,445 - 12,312,253 (-)	NCBI		UU_Cfam_GSD_1.0

Mrps18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,601,522 - 47,624,805 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,335,421 - 16,351,363 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,335,396 - 16,351,661 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS18A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,635,967 - 38,657,253 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,641,755 - 38,657,472 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,224,282 - 44,232,879 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS18A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,480,669 - 28,497,354 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,480,660 - 28,500,706 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,720,626 - 43,737,567 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps18a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,016,680 - 16,031,368 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,016,670 - 16,031,368 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrps18a
460 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	970
Count of miRNA genes:	491
Interacting mature miRNAs:	566
Transcripts:	ENSMUST00000024763, ENSMUST00000123646, ENSMUST00000131943, ENSMUST00000134237, ENSMUST00000146255, ENSMUST00000147672
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300890	Bhr3_m	bronchial hyperresponsiveness 3 (mouse)			Not determined		17	3974890	48866091	Mouse
1300706	Alan1_m	alloantigen response 1 (mouse)			Not determined		17	4854752	46469702	Mouse
1357789	Kdnw3_m	kidney weight 3 (mouse)			Not determined		17	4854752	47885665	Mouse
4141272	Tfv1_m	total food volume 1 (mouse)			Not determined			4854752	65637357	Mouse
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	10081340	86996400	Mouse
4142150	Stheal11_m	soft tissue heal 11 (mouse)			Not determined		17	12286211	83361768	Mouse
12904946	Tammq8_m	tibialis anterior muscle mass QTL 8 (mouse)					17	12451787	46451787	Mouse
13524847	Asrq8a_m	acoustic startle response 8a (mouse)					17	12646961	46646961	Mouse
11081168	Tir7_m	trypanosome infection response 7 (mouse)					17	14123372	48123496	Mouse
1300995	Fembrs4_m	femur breaking strength 4 (mouse)			Not determined		17	15061652	49061760	Mouse
1300914	Pcir4_m	periosteal circumference 4 (mouse)			Not determined		17	15061652	49061760	Mouse
1302070	Tbbmd7_m	total body bone mineral density 7 (mouse)			Not determined		17	15061652	49061760	Mouse
1558886	Lgth9_m	body length 9 (mouse)			Not determined		17	15061652	49061760	Mouse
1302140	Wta4_m	weight adult 4 (mouse)			Not determined		17	16819721	50819843	Mouse
1302152	Skull25_m	skull morphology 25 (mouse)			Not determined		17	16819721	50819843	Mouse
10412083	Sm2_m	susceptibility to Schistosoma mansoni infection 2 (mouse)			Not determined		17	17029943	51030078	Mouse
13452396	Leusq3_m	leucocytosis susceptibility QTL 3 (mouse)					17	17462208	51462345	Mouse
13452399	Leusq6_m	leucocytosis susceptibility QTL 6 (mouse)					17	17462208	51462345	Mouse
10412214	Sxbq3_m	SGC/Knj cross B6 QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
1300535	Char3_m	P. chabaudi malaria resistance QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
1301840	Ssial4_m	susceptibility to sialadenitiss 4 (mouse)			Not determined		17	18175412	52178214	Mouse
1301331	Lbw1_m	lupus NZB x NZW 1 (mouse)			Not determined		17	18418357	52420983	Mouse
1301056	Pas2_m	pulmonary adenoma susceptibility 2 (mouse)			Not determined		17	18422141	52424327	Mouse
15039354	Nmrs36_m	NAFLD-associated magnetic resonance shift 36 (mouse)					17	19145025	53145025	Mouse
1301454	Eae5_m	susceptibility to experimental allergic encephalomyelitis 5 (mouse)			Not determined		17	24612750	58612864	Mouse
10412198	Sst5_m	susceptibility to tuberculosis 5 (mouse)			Not determined		17	25076583	55712970	Mouse
10412204	Bbaa29_m	B.burgdorferi-associated arthritis 29 (mouse)			Not determined		17	26051185	60051352	Mouse
1558758	Kcal2_m	kilocalorie 2 (mouse)			Not determined		17	26401012	52911704	Mouse
1302005	Loco2_m	locomotor activity 2 (mouse)			Not determined		17	26884972	60885114	Mouse
15039348	Nmrs37_m	NAFLD-associated magnetic resonance shift 37 (mouse)					17	27815209	61815209	Mouse
1300703	Uvbi2_m	UVB induced immunosuppression 2 (mouse)			Not determined		17	28622406	62622654	Mouse
1300589	Myaa2_m	modifier of Yaa 2 (mouse)			Not determined		17	30132555	64132666	Mouse
4141357	Mrdq1_m	modifier of retinal degeneration QTL 1 (mouse)			Not determined			30987903	48039703	Mouse
4140955	Plgr1_m	plague resistance locus 1 (mouse)			Not determined			31033500	65033630	Mouse
26884379	Skwq5_m	skull length QTL 5, 5 week (mouse)					17	33118974	54107028	Mouse
1300885	Mbis4_m	Mycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)			Not determined		17	35175817	70165926	Mouse
10755514	Amzn2_m	anatomical modifier of Zfp423 2 (mouse)					17	35966294	69966424	Mouse
12904951	Smmq2_m	soleus muscle mass QTL 2 (mouse)					17	36789743	70789743	Mouse
1300592	Pcyts5_m	plasmacytoma susceptibility 5 (mouse)			Not determined		17	38712887	72712970	Mouse
10755525	Lymph2_m	lymphocyte differential 2 (mouse)					17	38805626	72805626	Mouse
10755534	Lymph4_m	lymphocyte differential 4 (mouse)					17	38805626	72805626	Mouse
4141319	Hmtb8_m	hemostasis and thrombosis rebleeding time 8 (mouse)			Not determined			40534447	74534623	Mouse
15039324	Nmrs48_m	NAFLD-associated magnetic resonance shift 48 (mouse)					17	40939187	74939187	Mouse
4141478	Hbnr7_m	Heligmosomoides bakeri nematode resistance 7 (mouse)			Not determined			43051185	51739122	Mouse
25394539	Skmw85_m	skeletal muscle weight 85, gastroc (mouse)					17	43707668	46831957	Mouse
26884386	Skwq13_m	skull length QTL 13, 16 week (mouse)					17	43710891	53107028	Mouse
26884390	Skwq9_m	skull length QTL 9, 10 week (mouse)					17	43710891	67806995	Mouse
12903997	Cfq4_m	conditioned fear QTL 4 (mouse)					17	45016552	49366402	Mouse

Markers in Region

RH126721

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	46,128,672 - 46,128,903	UniSTS	GRCm38
MGSCv37	17	46,265,621 - 46,265,852	UniSTS	GRCm37
Celera	17	49,559,778 - 49,560,009	UniSTS
Cytogenetic Map	17	C	UniSTS
Whitehead/MRC_RH	17	568.64	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_026768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB049953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC104518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC110562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK172171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC041151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000024763 ⟹ ENSMUSP00000024763

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,421,912 - 46,439,836 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,110,986 - 46,128,910 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000123646 ⟹ ENSMUSP00000122433

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,421,922 - 46,436,791 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,110,996 - 46,125,865 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000131943

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,421,921 - 46,434,053 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,110,995 - 46,123,127 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134237

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,433,729 - 46,439,796 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,122,803 - 46,128,870 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000146255

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,436,384 - 46,439,719 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,125,458 - 46,128,793 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000147672

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	46,436,201 - 46,438,649 (+)	Ensembl
GRCm38.p6 Ensembl	17	46,125,275 - 46,127,723 (+)	Ensembl

RefSeq Acc Id:

NM_026768 ⟹ NP_081044

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	46,421,930 - 46,439,834 (+)	NCBI
GRCm38	17	46,111,004 - 46,128,908 (+)	ENTREZGENE
MGSCv37	17	46,247,953 - 46,265,857 (+)	RGD
Celera	17	49,542,531 - 49,560,014 (+)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

AGGTGCGTTCCAAGATGGCGGCCCTCAGGGCTCTGGTGTCAGGCTGCGGGCGGCAGCTCCAAGC
GTTCCTGGCAGGCCCCGCTGCCACTGGCTGGTTATGGCTTCCAGCTCGCGGGTTGAGAGAAGTG
GTGAAGATCCAAGAAGGGAAGACGACTGTAATTGAAGGCCGAATCACAGAAACTCCCAAGGCGA
CTCCAGATCCCCCTAACCCCTCAGGCCAGTGCCCCATCTGCCGCTGGAACCTGAAGCACAAATA
TACCTATGAGGATGTGTTGTTGCTCAGTCAGTTCATCCGGCCTTATGGAGGCATGCTGCCCCGG
CGGGTCACAGGCTTGTGCCGGGAAGAACACCGAAAAATCGAGGAGTGCGTGAAGATGGCTCATC
GAGCAGGTCTGTTACCAAATCACAGACCACAGCTTCCAGAAGGATGCTTACCAAAGGATAAACC
CAAGCTCAACCGCTATCTGACTCGCTGGGCTCCCAAGTCCGTCAAGCCCATCTATAAAAAAGGC
CACCGTTGGAACAAGGTGGGTATGGCCGTGGGGTCACCACTCCTGAAAGACAATGTCTGCTACT
CCAGAAGGCCTCTGAAGATGATGCATTAGTGGGAGCAGGACTTCTGAAGAGCTGACTAGAACCG
TCTAGAAGATGCACTTGCTCCTCCCACCAGAACCATTATCCTCCACAACAGCACAGAGAACTAA
CTTCTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGGAGCTGGATCT
CCTGGCCACTGTGGTCTTCTGCCTGGCTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCC
AAGGCAATGTAATAAAGCAGGCTCTTGGCTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_081044	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH25456	(Get FASTA)	NCBI Sequence Viewer
	AAH58959	(Get FASTA)	NCBI Sequence Viewer
	BAB22794	(Get FASTA)	NCBI Sequence Viewer
	BAB41006	(Get FASTA)	NCBI Sequence Viewer
	BAC25825	(Get FASTA)	NCBI Sequence Viewer
	BAE42864	(Get FASTA)	NCBI Sequence Viewer
	EDL23468	(Get FASTA)	NCBI Sequence Viewer
	EDL23469	(Get FASTA)	NCBI Sequence Viewer
	EDL23470	(Get FASTA)	NCBI Sequence Viewer
	EDL23471	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000024763
	ENSMUSP00000024763.4
	ENSMUSP00000122433.2
GenBank Protein	Q99N85	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_081044 ⟸ NM_026768
- Peptide Label:	precursor
- UniProtKB:	Q9D1J6 (UniProtKB/Swiss-Prot), Q8R3H2 (UniProtKB/Swiss-Prot), Q99N85 (UniProtKB/Swiss-Prot), Q5U5I3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALRALVSGCGRQLQAFLAGPAATGWLWLPARGLREVVKIQEGKTTVIEGRITETPKATPDPP NPSGQCPICRWNLKHKYTYEDVLLLSQFIRPYGGMLPRRVTGLCREEHRKIEECVKMAHRAGLL PNHRPQLPEGCLPKDKPKLNRYLTRWAPKSVKPIYKKGHRWNKVGMAVGSPLLKDNVCYSRRPL KMMH hide sequence

RefSeq Acc Id:

ENSMUSP00000122433 ⟸ ENSMUST00000123646

RefSeq Acc Id:

ENSMUSP00000024763 ⟸ ENSMUST00000024763

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99N85-F1-model_v2	AlphaFold	Q99N85	1-196	view protein structure

Promoters

RGD ID:

13676192

Promoter ID:

EPDNEW_M22245

Type:

multiple initiation site

Name:

Mrps18a_1

Description:

Mus musculus mitochondrial ribosomal protein S18A , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	46,111,008 - 46,111,068	EPDNEW

RGD ID:

6828380

Promoter ID:

MM_KWN:23611

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000070258, OTTMUST00000070260, OTTMUST00000070261

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	46,247,689 - 46,248,189 (+)	MPROMDB

RGD ID:

6828381

Promoter ID:

MM_KWN:23612

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

OTTMUST00000070263

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	46,259,476 - 46,259,976 (+)	MPROMDB

RGD ID:

6828379

Promoter ID:

MM_KWN:23613

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Liver

Transcripts:

OTTMUST00000070259, OTTMUST00000070264

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	46,261,366 - 46,262,377 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1915815	AgrOrtholog
Ensembl Genes	ENSMUSG00000023967	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000024763	ENTREZGENE
	ENSMUST00000024763.10	UniProtKB/TrEMBL
	ENSMUST00000123646.2	UniProtKB/TrEMBL
Gene3D-CATH	4.10.640.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ribosomal_S18	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S18_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:68565	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1915815	ENTREZGENE
NCBI Gene	68565	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN S18A, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR13479	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosomal_S18	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mrps18a	PhenoGen
PRINTS	RIBOSOMALS18	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46911	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D3Z603_MOUSE	UniProtKB/TrEMBL
	Q5U5I3	ENTREZGENE, UniProtKB/TrEMBL
	Q8R3H2	ENTREZGENE
	Q99N85	ENTREZGENE
	Q9D1J6	ENTREZGENE
	RT18A_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q8R3H2	UniProtKB/Swiss-Prot
	Q9D1J6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar