Cog6 (component of oligomeric golgi complex 6) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cog6 (component of oligomeric golgi complex 6) Mus musculus
Analyze
Symbol: Cog6
Name: component of oligomeric golgi complex 6
RGD ID: 1551639
MGI Page MGI
Description: Predicted to be involved in Golgi organization; glycosylation; and retrograde transport, vesicle recycling within Golgi. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Is expressed in retina outer nuclear layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933405E16Rik; AU018618; COG complex subunit 6; conserved oligomeric Golgi complex protein 6; conserved oligomeric Golgi complex subunit 6; mKIAA1134
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39352,889,544 - 52,924,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl352,889,296 - 52,924,658 (-)EnsemblGRCm39 Ensembl
GRCm38352,982,123 - 53,017,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl352,981,875 - 53,017,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv37352,786,045 - 52,821,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36353,070,095 - 53,105,130 (-)NCBIMGSCv36mm8
Celera352,710,466 - 52,745,600 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map324.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone structure  (IEA)
abnormal coat/hair pigmentation  (IEA)
abnormal cornea morphology  (IEA)
abnormal coronary sinus connection  (IEA)
abnormal ductus venosus valve morphology  (IEA)
abnormal inferior vena cava morphology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal liver vasculature morphology  (IEA)
abnormal vertebral artery topology  (IEA)
abnormal vitelline vein connection  (IEA)
decreased alpha-beta T cell number  (IEA)
decreased bone mineral content  (IEA)
decreased CD4-positive NK T cell number  (IEA)
decreased CD8-positive, alpha-beta T cell number  (IEA)
decreased CD8-positive, naive alpha-beta T cell number  (IEA)
decreased effector memory CD8-positive, alpha-beta T cell number  (IEA)
decreased erythrocyte cell number  (IEA)
decreased hematocrit  (IEA)
decreased hemoglobin content  (IEA)
decreased Ly6C-positive immature NK cell number  (IEA)
decreased Ly6C-positive mature NK cell number  (IEA)
decreased marginal zone B cell number  (IEA)
decreased mean corpuscular hemoglobin  (IEA)
decreased mean corpuscular hemoglobin concentration  (IEA)
decreased memory-marker CD4-negative NK T cell number  (IEA)
decreased memory-marker CD4-positive NK T cell number  (IEA)
decreased memory-marker gamma-delta T cell number  (IEA)
decreased memory-marker NK cell number  (IEA)
decreased NK cell number  (IEA)
decreased NK T cell number  (IEA)
decreased T cell number  (IEA)
decreased T-helper cell number  (IEA)
decreased transitional stage T2 B cell number  (IEA)
dual inferior vena cava  (IEA)
fusion of vertebral arches  (IEA)
increased anti-nuclear antigen antibody level  (IEA)
increased B-2 B cell number  (IEA)
increased CD4-negative NK T cell number  (IEA)
increased CD4-positive, alpha-beta memory T cell number  (IEA)
increased CD4-positive, alpha-beta T cell number  (IEA)
increased CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
increased CD5-positive gamma-delta T cell number  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating amylase level  (IEA)
increased circulating aspartate transaminase level  (IEA)
increased circulating bilirubin level  (IEA)
increased circulating total protein level  (IEA)
increased effector memory T-helper cell number  (IEA)
increased eosinophil cell number  (IEA)
increased follicular B cell number  (IEA)
increased gamma-delta T cell number  (IEA)
increased granulocyte number  (IEA)
increased KLRG1+ CD4 alpha-beta T cell number  (IEA)
increased KLRG1+ CD8 alpha-beta T cell number  (IEA)
increased KLRG1-positive CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
increased KLRG1-positive NK cell number  (IEA)
increased KLRG1-positive T-helper cell number  (IEA)
increased leukocyte cell number  (IEA)
increased Ly6C high monocyte number  (IEA)
increased mean platelet volume  (IEA)
increased memory CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
increased memory-marker gamma-delta T cell number  (IEA)
increased memory-marker NK cell number  (IEA)
increased monocyte cell number  (IEA)
increased plasma cell number  (IEA)
increased red blood cell distribution width  (IEA)
intracerebral hemorrhage  (IEA)
muscular ventricular septal defect  (IEA)
no abnormal phenotype detected  (IEA)
thin hypoglossal nerve  (IEA)
vertebral transformation  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12465718   PMID:12477932   PMID:12520002   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:21677750   PMID:21873635   PMID:30973865   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Cog6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39352,889,544 - 52,924,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl352,889,296 - 52,924,658 (-)EnsemblGRCm39 Ensembl
GRCm38352,982,123 - 53,017,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl352,981,875 - 53,017,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv37352,786,045 - 52,821,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36353,070,095 - 53,105,130 (-)NCBIMGSCv36mm8
Celera352,710,466 - 52,745,600 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map324.1NCBI
COG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381339,655,627 - 39,791,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1339,655,627 - 39,791,665 (+)EnsemblGRCh38hg38GRCh38
GRCh371340,229,764 - 40,365,803 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361339,127,814 - 39,224,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 341339,127,813 - 39,224,632NCBI
Celera1321,282,474 - 21,418,517 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1321,028,744 - 21,165,223 (+)NCBIHuRef
CHM1_11340,197,304 - 40,333,343 (+)NCBICHM1_1
T2T-CHM13v2.01338,874,034 - 39,010,137 (+)NCBIT2T-CHM13v2.0
Cog6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82139,212,459 - 139,249,505 (-)NCBIGRCr8
mRatBN7.22137,062,127 - 137,099,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2137,061,346 - 137,099,190 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2143,639,424 - 143,676,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02141,751,508 - 141,788,288 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02136,383,282 - 136,420,047 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02142,197,566 - 142,235,054 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2142,196,754 - 142,235,066 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02161,882,713 - 161,921,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42142,767,258 - 142,804,731 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12142,717,222 - 142,754,694 (-)NCBI
Celera2131,560,563 - 131,597,609 (-)NCBICelera
Cytogenetic Map2q26NCBI
Cog6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554316,637,327 - 6,703,828 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554316,641,116 - 6,703,797 (-)NCBIChiLan1.0ChiLan1.0
COG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21439,186,623 - 39,283,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11330,291,470 - 30,399,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01320,872,151 - 20,973,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11339,459,424 - 39,556,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1339,459,424 - 39,591,666 (+)Ensemblpanpan1.1panPan2
COG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,428,277 - 1,524,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,331,966 - 1,524,747 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha251,471,940 - 1,621,602 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0251,472,981 - 1,622,702 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl251,472,081 - 1,622,745 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1251,375,174 - 1,524,816 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0251,368,146 - 1,517,792 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0251,434,939 - 1,584,610 (-)NCBIUU_Cfam_GSD_1.0
Cog6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945162,511,267 - 162,585,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365655,996,270 - 6,069,426 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365655,996,031 - 6,069,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1114,576,214 - 14,649,795 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11114,576,194 - 14,737,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21114,710,709 - 14,979,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COG6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1318,034,004 - 18,170,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl318,034,066 - 18,130,060 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605726,108,592 - 26,245,376 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624748444,784 - 520,804 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cog6
1154 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:298
Count of miRNA genes:243
Interacting mature miRNAs:272
Transcripts:ENSMUST00000036665
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse

Markers in Region
RH136228  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38352,982,411 - 52,982,605UniSTSGRCm38
MGSCv37352,786,333 - 52,786,527UniSTSGRCm37
Celera352,710,754 - 52,710,948UniSTS
Cytogenetic Map3DUniSTS
MHAa84d5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38353,011,251 - 53,011,423UniSTSGRCm38
MGSCv37352,815,173 - 52,815,345UniSTSGRCm37
Celera352,739,628 - 52,739,800UniSTS
Cytogenetic Map3DUniSTS
Whitehead_YAC3 UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000036665   ⟹   ENSMUSP00000048603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,889,296 - 52,924,658 (-)Ensembl
GRCm38.p6 Ensembl352,981,875 - 53,017,237 (-)Ensembl
Ensembl Acc Id: ENSMUST00000192788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,903,221 - 52,924,631 (-)Ensembl
GRCm38.p6 Ensembl352,995,800 - 53,017,210 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,917,778 - 52,924,633 (-)Ensembl
GRCm38.p6 Ensembl353,010,357 - 53,017,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193432   ⟹   ENSMUSP00000141339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,892,148 - 52,924,637 (-)Ensembl
GRCm38.p6 Ensembl352,984,727 - 53,017,216 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,889,543 - 52,902,106 (-)Ensembl
GRCm38.p6 Ensembl352,982,122 - 52,994,685 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195183   ⟹   ENSMUSP00000141733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl352,900,938 - 52,924,639 (-)Ensembl
GRCm38.p6 Ensembl352,993,517 - 53,017,218 (-)Ensembl
RefSeq Acc Id: NM_026225   ⟹   NP_080501
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39352,889,544 - 52,924,644 (-)NCBI
GRCm38352,982,123 - 53,017,223 (-)ENTREZGENE
MGSCv37352,786,045 - 52,821,145 (-)RGD
Celera352,710,466 - 52,745,600 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080501   ⟸   NM_026225
- UniProtKB: Q9CTA8 (UniProtKB/Swiss-Prot),   Q8CHB1 (UniProtKB/Swiss-Prot),   Q8BSN7 (UniProtKB/Swiss-Prot),   Q8R3I3 (UniProtKB/Swiss-Prot),   A0A0R4J0L5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000141339   ⟸   ENSMUST00000193432
Ensembl Acc Id: ENSMUSP00000048603   ⟸   ENSMUST00000036665
Ensembl Acc Id: ENSMUSP00000141733   ⟸   ENSMUST00000195183
Protein Domains
Conserved oligomeric complex COG6 N-terminal   Conserved Oligomeric Golgi complex subunit 6 C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3I3-F1-model_v2 AlphaFold Q8R3I3 1-657 view protein structure

Promoters
RGD ID:6833590
Promoter ID:MM_KWN:34304
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008PEM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36352,797,406 - 52,797,906 (-)MPROMDB
RGD ID:6833588
Promoter ID:MM_KWN:34305
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000029305,   NM_026225,   UC008PEO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36352,820,789 - 52,821,289 (-)MPROMDB
RGD ID:6880636
Promoter ID:EPDNEW_M3769
Type:multiple initiation site
Name:Cog6_1
Description:Mus musculus component of oligomeric golgi complex 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38353,017,219 - 53,017,279EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914792 AgrOrtholog
Ensembl Genes ENSMUSG00000027742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036665 ENTREZGENE
  ENSMUST00000036665.10 UniProtKB/TrEMBL
  ENSMUST00000193432.6 UniProtKB/TrEMBL
  ENSMUST00000195183.2 UniProtKB/TrEMBL
InterPro COG6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG6_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67542 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914792 ENTREZGENE
NCBI Gene 67542 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COG6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG6_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cog6 PhenoGen
SMART COG6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YWW6_MOUSE UniProtKB/TrEMBL
  A0A0R4J0L5 ENTREZGENE, UniProtKB/TrEMBL
  COG6_MOUSE UniProtKB/Swiss-Prot
  Q8BRB0_MOUSE UniProtKB/TrEMBL
  Q8BSN7 ENTREZGENE
  Q8C7Y2_MOUSE UniProtKB/TrEMBL
  Q8CHB1 ENTREZGENE
  Q8R3I3 ENTREZGENE
  Q9CTA8 ENTREZGENE
UniProt Secondary Q8BSN7 UniProtKB/Swiss-Prot
  Q8CHB1 UniProtKB/Swiss-Prot
  Q9CTA8 UniProtKB/Swiss-Prot