Nudcd2 (NudC domain containing 2) - Rat Genome Database

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Gene: Nudcd2 (NudC domain containing 2) Mus musculus
Analyze
Symbol: Nudcd2
Name: NudC domain containing 2
RGD ID: 1551612
MGI Page MGI
Description: Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytosol; intercellular bridge; and mitotic spindle. Predicted to be active in cytoplasm. Is expressed in embryo. Orthologous to human NUDCD2 (NudC domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2700047N05Rik; D11Ertd603; D11Ertd603e; nudC domain-containing protein 2; RP23-382C18.4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14665  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,624,485 - 40,630,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,624,494 - 40,630,873 (+)EnsemblGRCm39 Ensembl
GRCm381140,733,645 - 40,740,046 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,733,667 - 40,740,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv371140,547,144 - 40,553,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,577,091 - 40,583,467 (+)NCBIMGSCv36mm8
Celera1144,585,696 - 44,592,094 (+)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:32325033   PMID:32554809   PMID:34709266  


Genomics

Comparative Map Data
Nudcd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,624,485 - 40,630,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,624,494 - 40,630,873 (+)EnsemblGRCm39 Ensembl
GRCm381140,733,645 - 40,740,046 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,733,667 - 40,740,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv371140,547,144 - 40,553,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,577,091 - 40,583,467 (+)NCBIMGSCv36mm8
Celera1144,585,696 - 44,592,094 (+)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.41NCBI
NUDCD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385163,446,526 - 163,460,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5163,446,526 - 163,460,102 (-)EnsemblGRCh38hg38GRCh38
GRCh375162,873,532 - 162,887,108 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365162,813,164 - 162,819,721 (-)NCBINCBI36Build 36hg18NCBI36
Build 345162,813,164 - 162,819,721NCBI
Celera5158,914,701 - 158,921,251 (-)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5157,980,278 - 157,986,828 (-)NCBIHuRef
CHM1_15162,313,053 - 162,319,610 (-)NCBICHM1_1
T2T-CHM13v2.05163,981,702 - 163,995,279 (-)NCBIT2T-CHM13v2.0
Nudcd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81025,665,493 - 25,671,010 (+)NCBIGRCr8
mRatBN7.21025,163,247 - 25,168,738 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1025,163,220 - 25,168,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1029,925,615 - 29,931,099 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01029,414,142 - 29,419,626 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01024,900,803 - 24,906,287 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01025,890,943 - 25,896,432 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1025,890,943 - 25,896,432 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01025,741,115 - 25,746,616 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41025,763,129 - 25,768,887 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11025,764,177 - 25,769,934 (+)NCBI
Celera1024,722,652 - 24,728,139 (+)NCBICelera
Cytogenetic Map10q12NCBI
Nudcd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540816,858,635 - 16,864,617 (-)NCBIChiLan1.0ChiLan1.0
NUDCD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24158,622,395 - 158,633,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15156,763,567 - 156,772,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05158,824,457 - 158,837,185 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15165,607,045 - 165,613,947 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5165,607,128 - 165,613,954 (-)Ensemblpanpan1.1panPan2
NUDCD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1447,787,146 - 47,793,325 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl447,787,371 - 47,793,323 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha447,680,315 - 47,686,411 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0448,218,104 - 48,224,233 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl448,218,321 - 48,228,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1448,001,281 - 48,007,403 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0448,159,565 - 48,165,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0448,679,386 - 48,685,536 (+)NCBIUU_Cfam_GSD_1.0
Nudcd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213102,150,333 - 102,156,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936515599,105 - 605,913 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936515599,759 - 605,931 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDCD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1660,332,492 - 60,346,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11660,332,140 - 60,341,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21665,172,608 - 65,181,588 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103244928
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12365,725,141 - 65,732,228 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2365,721,753 - 65,732,323 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366657437,804 - 44,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudcd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473326,351,533 - 26,357,303 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473326,351,523 - 26,357,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nudcd2
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:464
Count of miRNA genes:261
Interacting mature miRNAs:287
Transcripts:ENSMUST00000020578, ENSMUST00000127057, ENSMUST00000127382, ENSMUST00000141839, ENSMUST00000144601
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse

Markers in Region
18.MMHAP76FRF9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381140,731,894 - 40,732,044UniSTSGRCm38
MGSCv371140,545,396 - 40,545,546UniSTSGRCm37
Celera1144,583,948 - 44,584,098UniSTS
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS
cM Map1123.0UniSTS
Whitehead_YAC11 UniSTS
D11Ertd603e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381140,739,602 - 40,739,833UniSTSGRCm38
MGSCv371140,553,104 - 40,553,335UniSTSGRCm37
Celera1144,591,650 - 44,591,881UniSTS
Cytogenetic Map11A5UniSTS
cM Map1123.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000020578   ⟹   ENSMUSP00000020578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,624,494 - 40,630,873 (+)Ensembl
GRCm38.p6 Ensembl1140,733,667 - 40,740,046 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,624,571 - 40,627,239 (+)Ensembl
GRCm38.p6 Ensembl1140,733,744 - 40,736,412 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127382   ⟹   ENSMUSP00000123991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,624,773 - 40,630,377 (+)Ensembl
GRCm38.p6 Ensembl1140,733,946 - 40,739,550 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,625,032 - 40,630,310 (+)Ensembl
GRCm38.p6 Ensembl1140,734,205 - 40,739,483 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,627,133 - 40,630,091 (+)Ensembl
GRCm38.p6 Ensembl1140,736,306 - 40,739,264 (+)Ensembl
RefSeq Acc Id: NM_001290697   ⟹   NP_001277626
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,624,485 - 40,630,873 (+)NCBI
GRCm381140,733,661 - 40,740,046 (+)NCBI
Celera1144,585,715 - 44,592,094 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001425561   ⟹   NP_001412490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,624,485 - 40,630,873 (+)NCBI
RefSeq Acc Id: NM_026023   ⟹   NP_080299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,624,485 - 40,630,873 (+)NCBI
GRCm381140,733,661 - 40,740,046 (+)NCBI
MGSCv371140,547,144 - 40,553,548 (+)RGD
Celera1144,585,715 - 44,592,094 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080299   ⟸   NM_026023
- Peptide Label: isoform 1
- UniProtKB: Q9CY63 (UniProtKB/Swiss-Prot),   Q8CD03 (UniProtKB/Swiss-Prot),   Q9D0V4 (UniProtKB/Swiss-Prot),   Q9CQ48 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277626   ⟸   NM_001290697
- Peptide Label: isoform 2
- UniProtKB: E0CYQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020578   ⟸   ENSMUST00000020578
RefSeq Acc Id: ENSMUSP00000123991   ⟸   ENSMUST00000127382
RefSeq Acc Id: NP_001412490   ⟸   NM_001425561
- Peptide Label: isoform 3
Protein Domains
CS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQ48-F1-model_v2 AlphaFold Q9CQ48 1-157 view protein structure

Promoters
RGD ID:6821500
Promoter ID:MM_KWN:6990
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109302,   ENSMUST00000109303,   NM_013552,   NM_026023,   OTTMUST00000012110,   OTTMUST00000012112,   OTTMUST00000012113,   OTTMUST00000012115,   OTTMUST00000012118,   UC007ILU.1,   UC007ILV.1,   UC007ILW.1,   UC007ILX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361140,546,796 - 40,548,202 (+)MPROMDB
RGD ID:6821464
Promoter ID:MM_KWN:6991
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000012111
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361140,548,991 - 40,549,832 (+)MPROMDB
RGD ID:8674314
Promoter ID:EPDNEW_M15187
Type:initiation region
Name:Nudcd2_1
Description:Mus musculus NudC domain containing 2 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15188  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381140,733,658 - 40,733,718EPDNEW
RGD ID:8674316
Promoter ID:EPDNEW_M15188
Type:initiation region
Name:Nudcd2_2
Description:Mus musculus NudC domain containing 2 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15187  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381140,733,925 - 40,733,985EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277103 AgrOrtholog
Ensembl Genes ENSMUSG00000020328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020578 ENTREZGENE
  ENSMUST00000020578.11 UniProtKB/Swiss-Prot
  ENSMUST00000127382 ENTREZGENE
  ENSMUST00000127382.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NudC_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  p23_NUDCD2 UniProtKB/Swiss-Prot
KEGG Report mmu:52653 UniProtKB/Swiss-Prot
MGD MGI:1277103 ENTREZGENE
NCBI Gene 52653 ENTREZGENE
PANTHER NUDC DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12356 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF04969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nudcd2 PhenoGen
PROSITE PS51203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CYQ2 ENTREZGENE, UniProtKB/TrEMBL
  NUDC2_MOUSE UniProtKB/Swiss-Prot
  Q8CD03 ENTREZGENE
  Q9CQ48 ENTREZGENE
  Q9CY63 ENTREZGENE
  Q9D0V4 ENTREZGENE
UniProt Secondary Q8CD03 UniProtKB/Swiss-Prot
  Q9CY63 UniProtKB/Swiss-Prot
  Q9D0V4 UniProtKB/Swiss-Prot