Usp19 (ubiquitin specific peptidase 19) - Rat Genome Database
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Gene: Usp19 (ubiquitin specific peptidase 19) Mus musculus
Analyze
Symbol: Usp19
Name: ubiquitin specific peptidase 19
RGD ID: 1551608
MGI Page MGI
Description: Exhibits Lys48-specific deubiquitinase activity; thiol-dependent ubiquitin-specific protease activity; and ubiquitin protein ligase binding activity. Involved in several processes, including negative regulation of proteasomal protein catabolic process; protein K48-linked deubiquitination; and protein stabilization. Localizes to cytosol. Is expressed in ovary and primary sex cord. Orthologous to human USP19 (ubiquitin specific peptidase 19); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 8430421I07Rik; AI047774; deubiquitinating enzyme 19; ubiquitin carboxyl-terminal hydrolase 19; ubiquitin specific protease 19; ubiquitin thioesterase 19; ubiquitin thiolesterase 19; ubiquitin-specific processing protease 19; ubiquitin-specific-processing protease 19; Zmynd9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,367,806 - 108,379,536 (+)NCBIGRCm39mm39
GRCm389108,490,607 - 108,502,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,490,602 - 108,502,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,393,007 - 108,404,668 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,348,851 - 108,359,802 (+)NCBImm8
Celera9108,100,140 - 108,111,769 (+)NCBICelera
Cytogenetic Map9F2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12693553   PMID:14595844   PMID:14610273   PMID:14691545   PMID:15747579   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:19015242   PMID:21677750   PMID:21873635   PMID:21971047   PMID:25036637   PMID:25088257   PMID:25568336   PMID:25901042   PMID:26048142  
PMID:27113764   PMID:28190767   PMID:28886438   PMID:29901692   PMID:30386869   PMID:31127032   PMID:32325033  


Genomics

Comparative Map Data
Usp19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,367,806 - 108,379,536 (+)NCBIGRCm39mm39
GRCm389108,490,607 - 108,502,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,490,602 - 108,502,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,393,007 - 108,404,668 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,348,851 - 108,359,802 (+)NCBImm8
Celera9108,100,140 - 108,111,769 (+)NCBICelera
Cytogenetic Map9F2NCBI
USP19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,108,046 - 49,120,938 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,108,050 - 49,120,933 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,145,479 - 49,158,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,121,112 - 49,133,217 (-)NCBINCBI36hg18NCBI36
Build 34349,121,111 - 49,133,217NCBI
Celera349,103,060 - 49,115,165 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,204,015 - 49,216,907 (-)NCBIHuRef
CHM1_1349,098,226 - 49,111,118 (-)NCBICHM1_1
Usp19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,280,690 - 117,291,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,280,705 - 117,291,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,625,419 - 116,636,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,488,932 - 108,497,573 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
Usp19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,104,212 - 1,115,267 (-)NCBIChiLan1.0ChiLan1.0
USP19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,112,271 - 50,125,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,100,216 - 50,125,112 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,032,373 - 49,045,238 (-)NCBIMhudiblu_PPA_v0panPan3
USP19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2040,064,599 - 40,074,082 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12040,062,802 - 40,074,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Usp19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529814,649 - 826,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,726,731 - 31,738,770 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,726,668 - 31,738,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,958,907 - 34,968,638 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP19
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2210,510,423 - 10,523,487 (-)Ensembl
ChlSab1.12210,510,554 - 10,523,576 (-)NCBI
Usp19
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,134,419 - 3,145,512 (-)NCBI

Position Markers
RH135846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,500,422 - 108,500,601UniSTSGRCm38
MGSCv379108,402,753 - 108,402,932UniSTSGRCm37
Celera9108,109,854 - 108,110,033UniSTS
Cytogenetic Map9F2UniSTS
AW211941  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,490,292 - 108,490,422UniSTSGRCm38
MGSCv379108,392,623 - 108,392,753UniSTSGRCm37
Celera9108,099,756 - 108,099,886UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map9F1UniSTS
cM Map960.0UniSTS
Whitehead/MRC_RH91111.1UniSTS
D9Dcr111  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,493,947 - 108,494,044UniSTSGRCm38
MGSCv379108,396,278 - 108,396,375UniSTSGRCm37
Celera9108,103,381 - 108,103,477UniSTS
Cytogenetic Map9F2UniSTS
cM Map9 UniSTS
UniSTS:236250  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,494,575 - 108,494,788UniSTSGRCm38
MGSCv379108,396,906 - 108,397,119UniSTSGRCm37
Celera9108,104,008 - 108,104,221UniSTS
Cytogenetic Map9F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:609
Count of miRNA genes:250
Interacting mature miRNAs:270
Transcripts:ENSMUST00000006854, ENSMUST00000085044, ENSMUST00000166103, ENSMUST00000178075
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI644135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB806375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ442290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ770257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ075820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN665283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000006854   ⟹   ENSMUSP00000006854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,490,602 - 108,501,699 (+)Ensembl
RefSeq Acc Id: ENSMUST00000085044   ⟹   ENSMUSP00000082119
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,490,845 - 108,502,317 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166103   ⟹   ENSMUSP00000128573
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,490,840 - 108,502,337 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178075   ⟹   ENSMUSP00000135930
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,490,856 - 108,502,317 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,492,693 - 108,494,922 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193183
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,494,340 - 108,495,192 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,494,369 - 108,495,460 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193558   ⟹   ENSMUSP00000142137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,493,467 - 108,494,232 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,498,703 - 108,499,620 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193678   ⟹   ENSMUSP00000141738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,490,845 - 108,502,317 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,500,150 - 108,501,697 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194171   ⟹   ENSMUSP00000141628
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,494,630 - 108,501,699 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194225
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,496,989 - 108,498,719 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,495,536 - 108,496,463 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194863   ⟹   ENSMUSP00000141826
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,497,089 - 108,499,197 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195763
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,496,347 - 108,498,557 (+)Ensembl
RefSeq Acc Id: NM_001168371   ⟹   NP_001161843
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,875 - 108,379,536 (+)NCBI
GRCm389108,490,676 - 108,502,337 (+)NCBI
MGSCv379108,393,007 - 108,404,668 (+)RGD
Celera9108,100,140 - 108,111,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168372   ⟹   NP_001161844
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,875 - 108,379,536 (+)NCBI
GRCm389108,490,676 - 108,502,337 (+)NCBI
MGSCv379108,393,007 - 108,404,668 (+)RGD
Celera9108,100,140 - 108,111,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168373   ⟹   NP_001161845
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,875 - 108,379,536 (+)NCBI
GRCm389108,490,676 - 108,502,337 (+)NCBI
MGSCv379108,393,007 - 108,404,668 (+)RGD
Celera9108,100,140 - 108,111,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027804   ⟹   NP_082080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,875 - 108,378,898 (+)NCBI
GRCm389108,490,676 - 108,501,699 (+)NCBI
MGSCv379108,393,007 - 108,404,668 (+)RGD
Celera9108,100,140 - 108,111,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_145407   ⟹   NP_663382
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,875 - 108,379,536 (+)NCBI
GRCm389108,490,676 - 108,502,337 (+)NCBI
MGSCv379108,393,007 - 108,404,668 (+)RGD
Celera9108,100,140 - 108,111,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511832   ⟹   XP_006511895
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,680 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511833   ⟹   XP_006511896
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,607 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511834   ⟹   XP_006511897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,607 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313593   ⟹   XP_017169082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,607 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313594   ⟹   XP_017169083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,607 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244600   ⟹   XP_030100460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,518 (+)NCBI
GRCm389108,490,607 - 108,501,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244602   ⟹   XP_030100462
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,522 (+)NCBI
GRCm389108,490,607 - 108,502,323 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244603   ⟹   XP_030100463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,367,806 - 108,379,529 (+)NCBI
GRCm389108,490,607 - 108,502,330 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_082080   ⟸   NM_027804
- Peptide Label: isoform 1
- UniProtKB: Q3UJD6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161843   ⟸   NM_001168371
- Peptide Label: isoform 2
- UniProtKB: Q3UJD6 (UniProtKB/Swiss-Prot),   J3KMM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161844   ⟸   NM_001168372
- Peptide Label: isoform 3
- UniProtKB: Q3UJD6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161845   ⟸   NM_001168373
- Peptide Label: isoform 4
- UniProtKB: Q3UJD6 (UniProtKB/Swiss-Prot),   A0A0A6YWX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_663382   ⟸   NM_145407
- Peptide Label: isoform 5
- UniProtKB: Q3UJD6 (UniProtKB/Swiss-Prot),   E9Q9M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511895   ⟸   XM_006511832
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511897   ⟸   XM_006511834
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511896   ⟸   XM_006511833
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169082   ⟸   XM_017313593
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017169083   ⟸   XM_017313594
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030100463   ⟸   XM_030244603
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030100462   ⟸   XM_030244602
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100460   ⟸   XM_030244600
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000135930   ⟸   ENSMUST00000178075
RefSeq Acc Id: ENSMUSP00000006854   ⟸   ENSMUST00000006854
RefSeq Acc Id: ENSMUSP00000082119   ⟸   ENSMUST00000085044
RefSeq Acc Id: ENSMUSP00000128573   ⟸   ENSMUST00000166103
RefSeq Acc Id: ENSMUSP00000141628   ⟸   ENSMUST00000194171
RefSeq Acc Id: ENSMUSP00000142137   ⟸   ENSMUST00000193558
RefSeq Acc Id: ENSMUSP00000141738   ⟸   ENSMUST00000193678
RefSeq Acc Id: ENSMUSP00000141826   ⟸   ENSMUST00000194863
Protein Domains
CS   MYND-type   USP

Promoters
RGD ID:6845311
Promoter ID:MM_KWN:58797
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001168371,   NM_001168372,   NM_001168373,   NM_027804_USP19,   NM_145407,   UC009RPS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,392,351 - 108,393,242 (+)MPROMDB
RGD ID:6845308
Promoter ID:MM_KWN:58798
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:UC009RPW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,395,316 - 108,395,816 (+)MPROMDB
RGD ID:6845313
Promoter ID:MM_KWN:58799
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung
Transcripts:UC009RPX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,396,554 - 108,397,054 (+)MPROMDB
RGD ID:6848919
Promoter ID:MM_TRO:10298
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Lung
Transcripts:MTR013468.9.2343.3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,397,826 - 108,398,326 (+)MPROMDB
RGD ID:6848509
Promoter ID:MM_ACW:52034
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:USP19.GSEP07,   USP19.HSEP07,   USP19.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,398,706 - 108,399,206 (+)MPROMDB
RGD ID:6848508
Promoter ID:MM_ACW:52035
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:USP19.PSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,401,096 - 108,401,596 (+)MPROMDB
RGD ID:8670898
Promoter ID:EPDNEW_M13480
Type:initiation region
Name:Usp19_2
Description:Mus musculus ubiquitin specific peptidase 19 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13481  EPDNEW_M13482  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,490,705 - 108,490,765EPDNEW
RGD ID:8670900
Promoter ID:EPDNEW_M13481
Type:multiple initiation site
Name:Usp19_1
Description:Mus musculus ubiquitin specific peptidase 19 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13480  EPDNEW_M13482  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,490,845 - 108,490,905EPDNEW
RGD ID:8670902
Promoter ID:EPDNEW_M13482
Type:single initiation site
Name:Usp19_3
Description:Mus musculus ubiquitin specific peptidase 19 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13480  EPDNEW_M13481  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,493,423 - 108,493,483EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918722 AgrOrtholog
Ensembl Genes ENSMUSG00000006676 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000006854 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000082119 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128573 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000135930 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141628 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141738 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141826 UniProtKB/TrEMBL
  ENSMUSP00000142137 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006854 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000085044 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000166103 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000178075 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000193558 UniProtKB/TrEMBL
  ENSMUST00000193678 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000194171 UniProtKB/TrEMBL
  ENSMUST00000194863 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_MYND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71472 UniProtKB/Swiss-Prot
MGD MGI:1918722 ENTREZGENE
NCBI Gene 71472 ENTREZGENE
Pfam PF04969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-MYND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp19 PhenoGen
PROSITE PS51203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.289706 ENTREZGENE
UniProt A0A0A6YWN9_MOUSE UniProtKB/TrEMBL
  A0A0A6YWX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YX42_MOUSE UniProtKB/TrEMBL
  A0A0A6YXT9_MOUSE UniProtKB/TrEMBL
  E9Q9M5 ENTREZGENE, UniProtKB/TrEMBL
  J3KMM1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UJD6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TAC9 UniProtKB/Swiss-Prot
  Q3TUE6 UniProtKB/Swiss-Prot
  Q6P9T0 UniProtKB/Swiss-Prot
  Q80TP5 UniProtKB/Swiss-Prot
  Q80ZW5 UniProtKB/Swiss-Prot