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Gene: Pcyt1b (phosphate cytidylyltransferase 1, choline, beta isoform) Mus musculus

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Symbol:

Pcyt1b

Name:

phosphate cytidylyltransferase 1, choline, beta isoform

RGD ID:

1551569

MGI Page

MGI

Description:

Enables choline-phosphate cytidylyltransferase activity. Involved in CDP-choline pathway. Acts upstream of or within ovarian follicle development and spermatogenesis. Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system gland; nervous system; and sensory organ. Orthologous to human PCYT1B (phosphate cytidylyltransferase 1B, choline).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CCT B; CCT-beta; choline-phosphate cytidylyltransferase B; CT B; CTP:phosphocholine cytidylyltransferase B; CTTbet; CTTbeta; phosphorylcholine transferase B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcyt1ba (phosphate cytidylyltransferase 1, choline, beta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcyt1ba (phosphate cytidylyltransferase 1, choline, beta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PCT1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PCT1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pcyt2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y18H1A.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pcyt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pcyt1b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	92,698,469 - 92,793,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	92,698,469 - 92,793,557 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	93,654,863 - 93,749,951 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	93,654,863 - 93,749,951 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	90,900,202 - 90,995,287 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	89,907,582 - 90,002,667 (+)	NCBI		MGSCv36	mm8
Celera	X	80,576,672 - 80,673,771 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	41.28	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

juvenile rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

amphetamine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

fenamidone (EXP)

genistein (EXP)

gentamycin (ISO)

lead diacetate (EXP)

lead(0) (EXP)

lipopolysaccharide (ISO)

lithocholic acid (EXP)

methotrexate (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP)

potassium dichromate (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (EXP,ISO)

sunitinib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CDP-choline pathway (IDA,IEA,ISO)

lipid metabolic process (IEA)

ovarian follicle development (IMP)

phosphatidylcholine biosynthetic process (IDA,IEA,ISO)

phospholipid biosynthetic process (IEA)

response to vasopressin (ISO)

spermatogenesis (IMP)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IEA,ISO,ISS)

Molecular Function

catalytic activity (IEA)

choline-phosphate cytidylyltransferase activity (IBA,IDA,IEA,ISO)

identical protein binding (ISO)

nucleotidyltransferase activity (IEA)

phosphatidylcholine binding (IBA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycerophospholipid metabolic pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal ovary morphology (IAGP)

abnormal spermatogenesis (IAGP)

absent corpus luteum (IAGP)

absent ovarian follicles (IAGP)

female infertility (IAGP)

increased circulating follicle stimulating hormone level (IAGP)

increased circulating luteinizing hormone level (IAGP)

increased tumor incidence (IAGP)

ovary hyperplasia (IAGP)

reduced male fertility (IAGP)

seminiferous tubule degeneration (IAGP)

testicular atrophy (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Gene structure, expression and identification of a new CTP:phosphocholine cytidylyltransferase beta isoform.	Karim M, etal., Biochim Biophys Acta 2003 Jul 4;1633(1):1-12.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12520002	PMID:14610273	PMID:14681479	PMID:15143167	PMID:15345747	PMID:15489334
PMID:15798219	PMID:16141072	PMID:16141073	PMID:16602821	PMID:16919269	PMID:17560827	PMID:17967808	PMID:18423385	PMID:18799693	PMID:21267068	PMID:21736954	PMID:21873635
PMID:32900992	PMID:34321999	PMID:34702858	PMID:37196079

Genomics

Comparative Map Data

Pcyt1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	92,698,469 - 92,793,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	92,698,469 - 92,793,557 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	93,654,863 - 93,749,951 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	93,654,863 - 93,749,951 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	90,900,202 - 90,995,287 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	89,907,582 - 90,002,667 (+)	NCBI		MGSCv36	mm8
Celera	X	80,576,672 - 80,673,771 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	41.28	NCBI

PCYT1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	24,558,087 - 24,672,887 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	24,558,087 - 24,672,677 (-)	Ensembl			hg38	GRCh38
GRCh37	X	24,576,204 - 24,691,004 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	24,486,125 - 24,575,274 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	24,339,615 - 24,424,883	NCBI
Celera	X	28,699,089 - 28,813,849 (-)	NCBI		Celera
Cytogenetic Map	X	p22.11	NCBI
HuRef	X	22,318,180 - 22,433,269 (-)	NCBI		HuRef
CHM1_1	X	24,607,786 - 24,722,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	24,142,375 - 24,257,164 (-)	NCBI		T2T-CHM13v2.0

Pcyt1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	62,371,934 - 62,465,460 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	62,356,009 - 62,465,459 (+)	Ensembl				GRCr8
mRatBN7.2	X	58,378,090 - 58,471,623 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	58,378,116 - 58,468,935 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	59,837,010 - 59,906,338 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	63,338,109 - 63,407,443 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	60,889,498 - 60,958,732 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	62,727,691 - 62,821,199 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	62,727,755 - 62,818,522 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	81,023,064 - 81,087,051 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	58,842,540 - 58,906,499 (+)	NCBI		Celera
RGSC_v3.1	X	81,096,355 - 81,160,338 (+)	NCBI
Cytogenetic Map	X	q22	NCBI

Pcyt1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955509	4,896,190 - 4,990,149 (-)	Ensembl
ChiLan1.0	NW_004955509	4,896,208 - 4,990,101 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCYT1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	26,356,526 - 26,471,450 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	26,359,913 - 26,474,830 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	17,155,065 - 17,269,909 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	24,522,460 - 24,611,590 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	24,522,460 - 24,636,942 (-)	Ensembl			panPan2	panpan1.1

PCYT1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	20,076,298 - 20,207,837 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	20,079,772 - 20,207,722 (-)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	X	20,031,175 - 20,162,981 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	20,023,407 - 20,162,855 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	20,069,376 - 20,200,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	20,102,493 - 20,234,074 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	20,159,787 - 20,291,298 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pcyt1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	13,032,509 - 13,126,131 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936624	58,792 - 125,338 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936624	31,678 - 125,318 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCYT1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	20,605,945 - 20,743,134 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	20,605,769 - 20,743,081 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	22,084,358 - 22,221,168 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCYT1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	23,052,554 - 23,164,196 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	23,049,091 - 23,138,210 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	24,913,700 - 25,029,287 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcyt1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624897	842,455 - 942,880 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624897	842,581 - 943,194 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pcyt1b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	51,682,597 - 51,745,562 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pcyt1b
1838 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	4892
Count of miRNA genes:	862
Interacting mature miRNAs:	1210
Transcripts:	ENSMUST00000045898, ENSMUST00000113933, ENSMUST00000146263
Prediction methods:	Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141630	Gct6_m	granulosa cell tumorigenesis 6 (mouse)			Not determined			47179121	129764756	Mouse
4141803	Lmr30_m	leishmaniasis resistance 30 (mouse)			Not determined			85062606	119062720	Mouse
1302054	Gct4_m	granulosa cell tumorigenesis 4 (mouse)			Not determined		X	76124336	102062720	Mouse
13824980	Ferq1_m	genetic fertility QTL 1 (mouse)					X	54045360	148782996	Mouse
11075102	Modc2_m	modifier of Odc2 (mouse)					X	80189914	114190059	Mouse
1357500	Mdmsc6_m	modifier of muscularity 6 (mouse)			Not determined		X	75306671	109306758	Mouse
12879918	Shm4_m	sperm head morphology 4 (mouse)					X	72072050	102062720	Mouse
25314318	Sccor2_m	synaptonemal complex length to mean MLH1 count ratio 2 (mouse)					X	70543606	96543606	Mouse
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
4141665	Mhysq2_m	male hybrid sterility QTL 2 (mouse)			Not determined			71453852	139203212	Mouse

Markers in Region

Pcyt1b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	X	90,920,640 - 90,920,710	UniSTS	GRCm37
Celera	X	80,597,110 - 80,597,180	UniSTS
Cytogenetic Map	X	C3	UniSTS
cM Map	X		UniSTS

AW045697

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	93,749,616 - 93,749,735	UniSTS	GRCm38
MGSCv37	X	90,994,955 - 90,995,074	UniSTS	GRCm37
Celera	X	80,673,439 - 80,673,558	UniSTS
Cytogenetic Map	X	C3	UniSTS
Whitehead/MRC_RH	X	1044.43	UniSTS

px-30g9

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	93,679,145 - 93,679,256	UniSTS	GRCm38
MGSCv37	X	90,924,484 - 90,924,595	UniSTS	GRCm37
Celera	X	80,600,954 - 80,601,065	UniSTS
Cytogenetic Map	X	C3	UniSTS

Pcyt1b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	C3	UniSTS

Pcyt1b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	93,675,301 - 93,675,371	UniSTS	GRCm38
MGSCv37	X	90,920,640 - 90,920,710	UniSTS	GRCm37
Celera	X	80,597,110 - 80,597,180	UniSTS
Cytogenetic Map	X	C3	UniSTS

Pcyt1b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	C3	UniSTS

Pcyt1b

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	C3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_177546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_211138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006527985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK032027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL589652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL590390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY189949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY189950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB642464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB646993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000045898 ⟹ ENSMUSP00000044280

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	92,718,708 - 92,793,557 (+)	Ensembl
GRCm38.p6 Ensembl	X	93,675,102 - 93,749,951 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000113933 ⟹ ENSMUSP00000109566

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	92,698,469 - 92,793,557 (+)	Ensembl
GRCm38.p6 Ensembl	X	93,654,863 - 93,749,951 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000146263

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	92,775,168 - 92,778,462 (+)	Ensembl
GRCm38.p6 Ensembl	X	93,731,562 - 93,734,856 (+)	Ensembl

RefSeq Acc Id:

NM_177546 ⟹ NP_808214

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	92,698,469 - 92,793,554 (+)	NCBI
GRCm38	X	93,654,863 - 93,749,948 (+)	NCBI
MGSCv37	X	90,900,202 - 90,995,287 (+)	RGD
Celera	X	80,576,672 - 80,673,771 (+)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

AGCCATCAGAGCGGACAGAGCACAGCAACTGTCAATGAACAACAGCCCAGAGGGGACAAGAGGA
CACTTGTAGAAAATCAAATAAAGCAAAGGACTGGACAGCTTGAATCTCTGCTTATCCAATAAAC
CAGACACTCCTAGTCCTTTGGATCTTATCTGTCAGCACTGGGCATATCAAGCTGCCTTGAACTT
TTTAAACCAATTGTCTCTCCCATACATCTAGAGCCACTAAACTTCTCCCTGTGACTCAAAAGAA
CTTGTAAGGGAGAAGACCTTAGAGACGAAAGAAAGTTGGGGCCAAACCTTGTGGTACACCAGAA
ATGCAGCATGGACAAGGACGAATTCTCACGCAAGACCCTGACTGCACCAGCCCCATTTGCTGAT
GAATCCAGCTGCCAGTGCCAAGCACCTCATGAAAAACTGACCGTTGCCCAGGCCCGCTTAGGAA
CACCAGTTGATAGGCCTGTTAGAGTGTATGCAGATGGAATATTTGACCTCTTCCACTCAGGTCA
CGCAAGGGCACTTATGCAAGCAAAAACACTGTTTCCCAACAGCTACTTGTTGGTAGGAGTTTGC
AGTGATGACCTTACTCACAAATTCAAAGGTTTTACTGTGATGAACGAGGCAGAGAGATATGAAG
CTCTCAGACACTGTCGATACGTGGATGAAGTCATCAGAGACGCGCCATGGACTCTTACTCCAGA
GTTTCTGGAAAAACACAAGATTGACTTTGTGGCTCACGATGATATTCCATACTCCTCTGCTGGT
TCTGATGACGTTTATAAGCATATCAAGGAAGCAGGCATGTTTGTTCCAACACAAAGAACAGAAG
GCATCTCAACATCAGACATCATCACCAGAATTGTCCGTGACTATGATGTATATGCCCGGCGTAA
TCTCCAGAGAGGGTACACAGCCAAGGAGCTGAACGTCAGCTTTATAAACGAGAAGAAGTACCGT
TTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGTCAAGAATGTGGAAGAAAGATCAAAGGAGT
TTGTTAACAGAGTAGAAGAAAAGAGTCATGACCTAATTCAAAAGTGGGAAGAAAAATCAAGAGA
GTTTATTGGCAACTTCCTGGAACTGTTTGGGCCAGATGGTGCATGGAAGCAGATGTTCCAGGAG
AGGAGTAGCCGGATGCTGCAGGCATTATCTCCGAAGCAGAGTCCTGTGAGCAGCCCGACCCGGA
GCCGGTCCCCTTCTCGCTCTCCATCTCCTACCTTCTCCTGGCTCCCAAACAAGACCTCTCCCCC
CTCCTCACCCAAAGCAGCCTCAGCCTCCATCAGCAGCATGAGCGAGGGGGATGAGGATGAGAAG
TAAAGGTGCCTGGTCAACAAGAGCACACCACACAGGATGGGAAGGGCTCCCGGGATGCCTGGGT
GGTGTTGAGAGCTGCAGCTCTGCTGGGAGACGGGAGTTCTGCCATGGGAGTTACTAGGGCCAGC
TCTTTTTCCTTCTCCATTCAGTCTGGCCTGGGCTCAGCATGGAGGTTTCTGACCTGAAAACCCA
CACAGACCTTGTTAGCATCCTAGAAGCACCCTCACTTTAGCCCTGCTATGGAAAGGTGCAGAAC
ACTCCATGAAGTGGGATGAGTTCTGCTTTGGTCCACACATCTATCTGTAGCCAATAAGCCACCC
GCAGATGTGGCTGCTGCCTCGCCCTGCCCTCTCCAGTCCTCAAAGAGCCTTGCACGTTGCCCCC
TGTCACCCATGCTCTCCCAGAATGAATTCCCTTCCCACAATGGGCAAAGTTCAGCCTTCCCAGT
ACAGCCACTAAGGCTGGATGGAATGCACCAACCCTTTCCCATTTCAGGACCCTGCCTCAGACGC
AGCTTCGCGTTGGTCAGATAGAAAAGTGTGACCCTTAATCTCTCACTCAAAGGACAGTTGTGTC
AAGGTGAACTCCACCCAAGGCCTGCCATGCTTCTGGCTGTACATTTTCATCTTTGGCATGAGGA
GACTGTTTTCCAGAAATTACCTGAATTGATGGGAATCACAGCAAGGAAGCCCGTCTTATCTAAA
AAAGAAATAACCACACAAACCTTCTTAGCAGGAGCTGCGCTGCTTTGGCTCCATGTATGGAAGA
TGAAAAATATCTCTTGGAGCTTCTTAAAGGATCAGCTCTTTCCATTTCTGACCACATCACAGTT
CATAGACTCGAATAACAGTTTGATGTAACAAACACTTAGTATACCGATAGGGGGTGCTACCTGC
ACGTATCTGTTCTATGTATCCTCCAATATGCCACCCCAGGGTGTATCCCATATGCAATATGAAT
CTATGGTGGTGGTGTTGGACTCTAGATCCCTCTCCTGCTCTCCCCCATGACACCCTGCTGAAAT
GCTTGATCTCAAGAACCGCCTGGTTCCCTCATGACTTGGGCACTTTGTCAAAAGCTCAATCAAA
TGTTAGATTCCGGTAGAAATGTTTTGTCCCAGAAAATTCCTGTTGTTCTTCACCCATGACATTT
TGGGTAAAGGGAAGGCTCAATCTTTTGAATGGTCTGAGAGACACTGAAGTTATTTCTGGCCCTT
GCTTCTCCAAATGGGATAGAGACTCTCAGATGACTGGAGAACTACATGGGGCCGCTGTTCCCTA
ATCACATGCAGGGAATGAGCAGGTCCAGTCAAGGTTTAGAGCTAATCTCTTAGGTACAAATAGA
ATTTCCTGAGTATCCTAGTAAAGACAGAAAGACAGCACTGCAGCTTGACTAAGTGAAGGCCTTA
ACATGTAACTGGTGGGCAAAGTCCAACACCTCCAGTGACAGAAACACCCCCTGCCTTCAGAGGC
TTTGGGAACATGCATTCTGGGGGGGGGGTAGGGAGACAACTCATGAAGAAAGGTACCCTGTCTT
TCCCCTTTGTGTTGGGGTCAAACTACCTCCCTGCTCACCTGAAGATCAGTGGTGACTGTTGCTA
AGGCAACCTGGAGCCTCCTTGTTCCTGGTACTTCTTCCAGAAGTTTGTAAAGTGCTCATGAAAG
ATGGGGGATCGCTGGGAATCCAGCCTGCGAGAAAGAAACTTCTTTTCATAGTCAAGGCCCTCTT
GGAGAATCACACCCCAGAGGCAAGGGCTTCCATTCCTCCACGGTATCGGTTTGACCTCAGCCTC
CCACCATGTACCCAGGACAAATTGTGCGTGTATGCCTTCTATTTCAGCCAGCTGACACTTGTGG
CAGTGCAGGGACAAGGAGAGCAACTGAGCAAATGAAGAAGAGGAGAAGAGGGTCCTAGAGAGAG
GAAAGAAAGAAAGCTAAAACCATCTACGCTCTTAAGCCACTTCTGGTTGTATGTGCGGAGACTC
TCTGTTGAGGAAGCCTTTTTAAAAAGTTCTGGCTCTATGACCCAGGGCAGATAGGTCCACTTTT
ACCTAAGTCTTGCTCTGAGGCAGAGAATGTAGAGGTGACATATCAGGTGAGTATAATTTTGCAG
GCCCTACACACCATCCTGCCAGGTGCCACATACGTGACTCATCAGAGAGTGCCACTGTAGCTGT
GAATGATGGGAAGTGACCAACATCAGAATCATCCCAGGTACAAACAGACACTTAAGTGGGTTTA
AACTTCCTTCTCAGTTTGCAACAGCATCTCCTCACCTTCCCAAAGCCACGAGCTTGCCACCAAG
AAATGGGGCGGATTCTGCTAGCCAACCTTTGGCCCTTCTTGACCATCTCACAGGCCTTCCCAGC
CCTGACCCAGGTTTACCACCCCCCACACCTGGGAGGAGCCATGACTGCACTTTGTGTGGGTTCT
TCAGGCAATTCTCATGGTCAAGGGCGAGTTAAGGATCGAATGACAGCATAACACGTGCTGCAGG
CTTGGAGAAGTAAGAAAAGGGATAGAAGCCGGGGAATGGGCTCCTTTTCCTCCATGAAAGGAAA
GAAGCTACTTAGAGAACCCATTCCCTAAGGTTGGGAATGGGAAGATGGAAAAAATGACACTGGA
GTTGGTGAGTATGGGAGGATTTATATTTTCTACTTTCCTTCCAGGCATCACTAGGAAGGAGGAA
GGCTTCCTATTGTATCCTTCCATGGCTAGTGGATCCCCATGCAGCAGGTGGGGTCCTGGCCTCT
CCAGCTTCTTTGGCATATTAGCAATTCTCATATCTCTCCCCACCCCTGGAAACCAAGTGCTGAC
TCTCCATGTAAACAACAGGGGTGTAGTTGTAATATGGTGTATGGCCCATGTCTGCCACAAATTG
TCAGGATAACCCAGAGACAAAGATAAACCAGGCTTGTGACAGACACAGTGTGGCTTCTGACATG
CTGTGGGTGGGGGAGACTCAGCCATTCTATGACCTAGGCTACAAGATACTGCGGTTACACTGGT
GGGTTGTGGCCACAGGAAGAACATGGCTTATTTTCCCTCAGTCTTCAGGACTTTTTAAAATGCC
CAGTCCTACTCCACAGATGAGACTGGTTTTCAGGCATCTACTCAGCAACTCCAGTCTTGTCCTA
ACCATCTGATGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GTGAGCAAGAGATAAGTGAGCTCATTAGGCAAATTTTTTACTTCTCCTCTTCTCTAGTTTTCTG
TTGTGTCGCTGCAGTGTGTCTGGGGACAAAGCCATAAGAAGCCTATCTACTTAAAATTCTGCTG
TACATAGAAGCCGAGGGCTTGTCTGGATTCAAGAATGATCTTATGCCCAAGCATTTGCTCTGGT
GCTGAATAGTGCAAACTACTGGAACCACCCCAACCCTACCACTGAAACCCCTAGACCCAATCCA
GTCTCCTGATCCCCAATGGACCACAGTATTCCCAACTTGTTTATAAATAAAGGGACGCAGAGTC

hide sequence

RefSeq Acc Id:

NM_211138 ⟹ NP_997593

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	92,718,718 - 92,793,554 (+)	NCBI
GRCm38	X	93,675,112 - 93,749,948 (+)	NCBI
MGSCv37	X	90,900,202 - 90,995,287 (+)	RGD
Celera	X	80,576,672 - 80,673,771 (+)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

GTGCTGTCTGGTTGTTATAGTGATAAACTGAGGCCCTGCCTCTGGGCTTCTCCGAGAAAGAAAA
GGGTGGTGTGTGCGTTGGGGGTGGGGGTGGGGGTAACCTCTTTACTTCCCCCCAGGGAAGACAA
AAAAGAAGGGAAGAAGAAGGGGGATGGGTAGGGAAGAGAAAAATACGTGACAAAGAAAACATTC
TTTGCCTGGGAGGAGACTCCCAGAGGGTGTAGAGCTGGAGGGAGCATTCACTGGCCATGCCAGT
ACTTACCACTGATGCTGAGTCAGAAACAGGTATCCCAAAATCCCTTTCCAATGAGCCTCCCTCA
GAAACCATGGAGGAAATAGAGCACACATGCCCACAGCCTCGACTGACCCTGACTGCACCAGCCC
CATTTGCTGATGAATCCAGCTGCCAGTGCCAAGCACCTCATGAAAAACTGACCGTTGCCCAGGC
CCGCTTAGGAACACCAGTTGATAGGCCTGTTAGAGTGTATGCAGATGGAATATTTGACCTCTTC
CACTCAGGTCACGCAAGGGCACTTATGCAAGCAAAAACACTGTTTCCCAACAGCTACTTGTTGG
TAGGAGTTTGCAGTGATGACCTTACTCACAAATTCAAAGGTTTTACTGTGATGAACGAGGCAGA
GAGATATGAAGCTCTCAGACACTGTCGATACGTGGATGAAGTCATCAGAGACGCGCCATGGACT
CTTACTCCAGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGCTCACGATGATATTCCATACT
CCTCTGCTGGTTCTGATGACGTTTATAAGCATATCAAGGAAGCAGGCATGTTTGTTCCAACACA
AAGAACAGAAGGCATCTCAACATCAGACATCATCACCAGAATTGTCCGTGACTATGATGTATAT
GCCCGGCGTAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAACGTCAGCTTTATAAACGAGA
AGAAGTACCGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGTCAAGAATGTGGAAGAAAG
ATCAAAGGAGTTTGTTAACAGAGTAGAAGAAAAGAGTCATGACCTAATTCAAAAGTGGGAAGAA
AAATCAAGAGAGTTTATTGGCAACTTCCTGGAACTGTTTGGGCCAGATGGTGCATGGAAGCAGA
TGTTCCAGGAGAGGAGTAGCCGGATGCTGCAGGCATTATCTCCGAAGCAGAGTCCTGTGAGCAG
CCCGACCCGGAGCCGGTCCCCTTCTCGCTCTCCATCTCCTACCTTCTCCTGGCTCCCAAACAAG
ACCTCTCCCCCCTCCTCACCCAAAGCAGCCTCAGCCTCCATCAGCAGCATGAGCGAGGGGGATG
AGGATGAGAAGTAAAGGTGCCTGGTCAACAAGAGCACACCACACAGGATGGGAAGGGCTCCCGG
GATGCCTGGGTGGTGTTGAGAGCTGCAGCTCTGCTGGGAGACGGGAGTTCTGCCATGGGAGTTA
CTAGGGCCAGCTCTTTTTCCTTCTCCATTCAGTCTGGCCTGGGCTCAGCATGGAGGTTTCTGAC
CTGAAAACCCACACAGACCTTGTTAGCATCCTAGAAGCACCCTCACTTTAGCCCTGCTATGGAA
AGGTGCAGAACACTCCATGAAGTGGGATGAGTTCTGCTTTGGTCCACACATCTATCTGTAGCCA
ATAAGCCACCCGCAGATGTGGCTGCTGCCTCGCCCTGCCCTCTCCAGTCCTCAAAGAGCCTTGC
ACGTTGCCCCCTGTCACCCATGCTCTCCCAGAATGAATTCCCTTCCCACAATGGGCAAAGTTCA
GCCTTCCCAGTACAGCCACTAAGGCTGGATGGAATGCACCAACCCTTTCCCATTTCAGGACCCT
GCCTCAGACGCAGCTTCGCGTTGGTCAGATAGAAAAGTGTGACCCTTAATCTCTCACTCAAAGG
ACAGTTGTGTCAAGGTGAACTCCACCCAAGGCCTGCCATGCTTCTGGCTGTACATTTTCATCTT
TGGCATGAGGAGACTGTTTTCCAGAAATTACCTGAATTGATGGGAATCACAGCAAGGAAGCCCG
TCTTATCTAAAAAAGAAATAACCACACAAACCTTCTTAGCAGGAGCTGCGCTGCTTTGGCTCCA
TGTATGGAAGATGAAAAATATCTCTTGGAGCTTCTTAAAGGATCAGCTCTTTCCATTTCTGACC
ACATCACAGTTCATAGACTCGAATAACAGTTTGATGTAACAAACACTTAGTATACCGATAGGGG
GTGCTACCTGCACGTATCTGTTCTATGTATCCTCCAATATGCCACCCCAGGGTGTATCCCATAT
GCAATATGAATCTATGGTGGTGGTGTTGGACTCTAGATCCCTCTCCTGCTCTCCCCCATGACAC
CCTGCTGAAATGCTTGATCTCAAGAACCGCCTGGTTCCCTCATGACTTGGGCACTTTGTCAAAA
GCTCAATCAAATGTTAGATTCCGGTAGAAATGTTTTGTCCCAGAAAATTCCTGTTGTTCTTCAC
CCATGACATTTTGGGTAAAGGGAAGGCTCAATCTTTTGAATGGTCTGAGAGACACTGAAGTTAT
TTCTGGCCCTTGCTTCTCCAAATGGGATAGAGACTCTCAGATGACTGGAGAACTACATGGGGCC
GCTGTTCCCTAATCACATGCAGGGAATGAGCAGGTCCAGTCAAGGTTTAGAGCTAATCTCTTAG
GTACAAATAGAATTTCCTGAGTATCCTAGTAAAGACAGAAAGACAGCACTGCAGCTTGACTAAG
TGAAGGCCTTAACATGTAACTGGTGGGCAAAGTCCAACACCTCCAGTGACAGAAACACCCCCTG
CCTTCAGAGGCTTTGGGAACATGCATTCTGGGGGGGGGGTAGGGAGACAACTCATGAAGAAAGG
TACCCTGTCTTTCCCCTTTGTGTTGGGGTCAAACTACCTCCCTGCTCACCTGAAGATCAGTGGT
GACTGTTGCTAAGGCAACCTGGAGCCTCCTTGTTCCTGGTACTTCTTCCAGAAGTTTGTAAAGT
GCTCATGAAAGATGGGGGATCGCTGGGAATCCAGCCTGCGAGAAAGAAACTTCTTTTCATAGTC
AAGGCCCTCTTGGAGAATCACACCCCAGAGGCAAGGGCTTCCATTCCTCCACGGTATCGGTTTG
ACCTCAGCCTCCCACCATGTACCCAGGACAAATTGTGCGTGTATGCCTTCTATTTCAGCCAGCT
GACACTTGTGGCAGTGCAGGGACAAGGAGAGCAACTGAGCAAATGAAGAAGAGGAGAAGAGGGT
CCTAGAGAGAGGAAAGAAAGAAAGCTAAAACCATCTACGCTCTTAAGCCACTTCTGGTTGTATG
TGCGGAGACTCTCTGTTGAGGAAGCCTTTTTAAAAAGTTCTGGCTCTATGACCCAGGGCAGATA
GGTCCACTTTTACCTAAGTCTTGCTCTGAGGCAGAGAATGTAGAGGTGACATATCAGGTGAGTA
TAATTTTGCAGGCCCTACACACCATCCTGCCAGGTGCCACATACGTGACTCATCAGAGAGTGCC
ACTGTAGCTGTGAATGATGGGAAGTGACCAACATCAGAATCATCCCAGGTACAAACAGACACTT
AAGTGGGTTTAAACTTCCTTCTCAGTTTGCAACAGCATCTCCTCACCTTCCCAAAGCCACGAGC
TTGCCACCAAGAAATGGGGCGGATTCTGCTAGCCAACCTTTGGCCCTTCTTGACCATCTCACAG
GCCTTCCCAGCCCTGACCCAGGTTTACCACCCCCCACACCTGGGAGGAGCCATGACTGCACTTT
GTGTGGGTTCTTCAGGCAATTCTCATGGTCAAGGGCGAGTTAAGGATCGAATGACAGCATAACA
CGTGCTGCAGGCTTGGAGAAGTAAGAAAAGGGATAGAAGCCGGGGAATGGGCTCCTTTTCCTCC
ATGAAAGGAAAGAAGCTACTTAGAGAACCCATTCCCTAAGGTTGGGAATGGGAAGATGGAAAAA
ATGACACTGGAGTTGGTGAGTATGGGAGGATTTATATTTTCTACTTTCCTTCCAGGCATCACTA
GGAAGGAGGAAGGCTTCCTATTGTATCCTTCCATGGCTAGTGGATCCCCATGCAGCAGGTGGGG
TCCTGGCCTCTCCAGCTTCTTTGGCATATTAGCAATTCTCATATCTCTCCCCACCCCTGGAAAC
CAAGTGCTGACTCTCCATGTAAACAACAGGGGTGTAGTTGTAATATGGTGTATGGCCCATGTCT
GCCACAAATTGTCAGGATAACCCAGAGACAAAGATAAACCAGGCTTGTGACAGACACAGTGTGG
CTTCTGACATGCTGTGGGTGGGGGAGACTCAGCCATTCTATGACCTAGGCTACAAGATACTGCG
GTTACACTGGTGGGTTGTGGCCACAGGAAGAACATGGCTTATTTTCCCTCAGTCTTCAGGACTT
TTTAAAATGCCCAGTCCTACTCCACAGATGAGACTGGTTTTCAGGCATCTACTCAGCAACTCCA
GTCTTGTCCTAACCATCTGATGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGTGAGCAAGAGATAAGTGAGCTCATTAGGCAAATTTTTTACTTCTCCTCTTCT
CTAGTTTTCTGTTGTGTCGCTGCAGTGTGTCTGGGGACAAAGCCATAAGAAGCCTATCTACTTA
AAATTCTGCTGTACATAGAAGCCGAGGGCTTGTCTGGATTCAAGAATGATCTTATGCCCAAGCA
TTTGCTCTGGTGCTGAATAGTGCAAACTACTGGAACCACCCCAACCCTACCACTGAAACCCCTA
GACCCAATCCAGTCTCCTGATCCCCAATGGACCACAGTATTCCCAACTTGTTTATAAATAAAGG
GACGCAGAGTC

hide sequence

RefSeq Acc Id:

XM_006527985 ⟹ XP_006528048

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	92,744,669 - 92,793,557 (+)	NCBI
GRCm38	X	93,701,067 - 93,749,951 (+)	NCBI

Sequence:

show sequence

GAGCTACCACAGGAGCAGTTATCTGCAGCCCGCCAGAATTGCTGTGCTTTTAGGCTCTCTCCGG
TGCAGATATCAGCTTTGGCCTTTGCATTGAAGAGACATCAGCATCTGTTATTTGCCAGGCTGGT
GTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTATGTGAAGTACAGGAGATGTCGTGCCACAC
TTCTGAATATGAGGTTCCTTTCAGCCGAGTGTCCCGGGTGTGGACCCTGACTGCACCAGCCCCA
TTTGCTGATGAATCCAGCTGCCAGTGCCAAGCACCTCATGAAAAACTGACCGTTGCCCAGGCCC
GCTTAGGAACACCAGTTGATAGGCCTGTTAGAGTGTATGCAGATGGAATATTTGACCTCTTCCA
CTCAGGTCACGCAAGGGCACTTATGCAAGCAAAAACACTGTTTCCCAACAGCTACTTGTTGGTA
GGAGTTTGCAGTGATGACCTTACTCACAAATTCAAAGGTTTTACTGTGATGAACGAGGCAGAGA
GATATGAAGCTCTCAGACACTGTCGATACGTGGATGAAGTCATCAGAGACGCGCCATGGACTCT
TACTCCAGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGCTCACGATGATATTCCATACTCC
TCTGCTGGTTCTGATGACGTTTATAAGCATATCAAGGAAGCAGGCATGTTTGTTCCAACACAAA
GAACAGAAGGCATCTCAACATCAGACATCATCACCAGAATTGTCCGTGACTATGATGTATATGC
CCGGCGTAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAACGTCAGCTTTATAAACGAGAAG
AAGTACCGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGTCAAGAATGTGGAAGAAAGAT
CAAAGGAGTTTGTTAACAGAGTAGAAGAAAAGAGTCATGACCTAATTCAAAAGTGGGAAGAAAA
ATCAAGAGAGTTTATTGGCAACTTCCTGGAACTGTTTGGGCCAGATGGTGCATGGAAGCAGATG
TTCCAGGAGAGGAGTAGCCGGATGCTGCAGGCATTATCTCCGAAGCAGAGTCCTGTGAGCAGCC
CGACCCGGAGCCGGTCCCCTTCTCGCTCTCCATCTCCTACCTTCTCCTGGCTCCCAAACAAGAC
CTCTCCCCCCTCCTCACCCAAAGCAGCCTCAGCCTCCATCAGCAGCATGAGCGAGGGGGATGAG
GATGAGAAGTAAAGGTGCCTGGTCAACAAGAGCACACCACACAGGATGGGAAGGGCTCCCGGGA
TGCCTGGGTGGTGTTGAGAGCTGCAGCTCTGCTGGGAGACGGGAGTTCTGCCATGGGAGTTACT
AGGGCCAGCTCTTTTTCCTTCTCCATTCAGTCTGGCCTGGGCTCAGCATGGAGGTTTCTGACCT
GAAAACCCACACAGACCTTGTTAGCATCCTAGAAGCACCCTCACTTTAGCCCTGCTATGGAAAG
GTGCAGAACACTCCATGAAGTGGGATGAGTTCTGCTTTGGTCCACACATCTATCTGTAGCCAAT
AAGCCACCCGCAGATGTGGCTGCTGCCTCGCCCTGCCCTCTCCAGTCCTCAAAGAGCCTTGCAC
GTTGCCCCCTGTCACCCATGCTCTCCCAGAATGAATTCCCTTCCCACAATGGGCAAAGTTCAGC
CTTCCCAGTACAGCCACTAAGGCTGGATGGAATGCACCAACCCTTTCCCATTTCAGGACCCTGC
CTCAGACGCAGCTTCGCGTTGGTCAGATAGAAAAGTGTGACCCTTAATCTCTCACTCAAAGGAC
AGTTGTGTCAAGGTGAACTCCACCCAAGGCCTGCCATGCTTCTGGCTGTACATTTTCATCTTTG
GCATGAGGAGACTGTTTTCCAGAAATTACCTGAATTGATGGGAATCACAGCAAGGAAGCCCGTC
TTATCTAAAAAAGAAATAACCACACAAACCTTCTTAGCAGGAGCTGCGCTGCTTTGGCTCCATG
TATGGAAGATGAAAAATATCTCTTGGAGCTTCTTAAAGGATCAGCTCTTTCCATTTCTGACCAC
ATCACAGTTCATAGACTCGAATAACAGTTTGATGTAACAAACACTTAGTATACCGATAGGGGGT
GCTACCTGCACGTATCTGTTCTATGTATCCTCCAATATGCCACCCCAGGGTGTATCCCATATGC
AATATGAATCTATGGTGGTGGTGTTGGACTCTAGATCCCTCTCCTGCTCTCCCCCATGACACCC
TGCTGAAATGCTTGATCTCAAGAACCGCCTGGTTCCCTCATGACTTGGGCACTTTGTCAAAAGC
TCAATCAAATGTTAGATTCCGGTAGAAATGTTTTGTCCCAGAAAATTCCTGTTGTTCTTCACCC
ATGACATTTTGGGTAAAGGGAAGGCTCAATCTTTTGAATGGTCTGAGAGACACTGAAGTTATTT
CTGGCCCTTGCTTCTCCAAATGGGATAGAGACTCTCAGATGACTGGAGAACTACATGGGGCCGC
TGTTCCCTAATCACATGCAGGGAATGAGCAGGTCCAGTCAAGGTTTAGAGCTAATCTCTTAGGT
ACAAATAGAATTTCCTGAGTATCCTAGTAAAGACAGAAAGACAGCACTGCAGCTTGACTAAGTG
AAGGCCTTAACATGTAACTGGTGGGCAAAGTCCAACACCTCCAGTGACAGAAACACCCCCTGCC
TTCAGAGGCTTTGGGAACATGCATTCTGGGGGGGGGGTAGGGAGACAACTCATGAAGAAAGGTA
CCCTGTCTTTCCCCTTTGTGTTGGGGTCAAACTACCTCCCTGCTCACCTGAAGATCAGTGGTGA
CTGTTGCTAAGGCAACCTGGAGCCTCCTTGTTCCTGGTACTTCTTCCAGAAGTTTGTAAAGTGC
TCATGAAAGATGGGGGATCGCTGGGAATCCAGCCTGCGAGAAAGAAACTTCTTTTCATAGTCAA
GGCCCTCTTGGAGAATCACACCCCAGAGGCAAGGGCTTCCATTCCTCCACGGTATCGGTTTGAC
CTCAGCCTCCCACCATGTACCCAGGACAAATTGTGCGTGTATGCCTTCTATTTCAGCCAGCTGA
CACTTGTGGCAGTGCAGGGACAAGGAGAGCAACTGAGCAAATGAAGAAGAGGAGAAGAGGGTCC
TAGAGAGAGGAAAGAAAGAAAGCTAAAACCATCTACGCTCTTAAGCCACTTCTGGTTGTATGTG
CGGAGACTCTCTGTTGAGGAAGCCTTTTTAAAAAGTTCTGGCTCTATGACCCAGGGCAGATAGG
TCCACTTTTACCTAAGTCTTGCTCTGAGGCAGAGAATGTAGAGGTGACATATCAGGTGAGTATA
ATTTTGCAGGCCCTACACACCATCCTGCCAGGTGCCACATACGTGACTCATCAGAGAGTGCCAC
TGTAGCTGTGAATGATGGGAAGTGACCAACATCAGAATCATCCCAGGTACAAACAGACACTTAA
GTGGGTTTAAACTTCCTTCTCAGTTTGCAACAGCATCTCCTCACCTTCCCAAAGCCACGAGCTT
GCCACCAAGAAATGGGGCGGATTCTGCTAGCCAACCTTTGGCCCTTCTTGACCATCTCACAGGC
CTTCCCAGCCCTGACCCAGGTTTACCACCCCCCACACCTGGGAGGAGCCATGACTGCACTTTGT
GTGGGTTCTTCAGGCAATTCTCATGGTCAAGGGCGAGTTAAGGATCGAATGACAGCATAACACG
TGCTGCAGGCTTGGAGAAGTAAGAAAAGGGATAGAAGCCGGGGAATGGGCTCCTTTTCCTCCAT
GAAAGGAAAGAAGCTACTTAGAGAACCCATTCCCTAAGGTTGGGAATGGGAAGATGGAAAAAAT
GACACTGGAGTTGGTGAGTATGGGAGGATTTATATTTTCTACTTTCCTTCCAGGCATCACTAGG
AAGGAGGAAGGCTTCCTATTGTATCCTTCCATGGCTAGTGGATCCCCATGCAGCAGGTGGGGTC
CTGGCCTCTCCAGCTTCTTTGGCATATTAGCAATTCTCATATCTCTCCCCACCCCTGGAAACCA
AGTGCTGACTCTCCATGTAAACAACAGGGGTGTAGTTGTAATATGGTGTATGGCCCATGTCTGC
CACAAATTGTCAGGATAACCCAGAGACAAAGATAAACCAGGCTTGTGACAGACACAGTGTGGCT
TCTGACATGCTGTGGGTGGGGGAGACTCAGCCATTCTATGACCTAGGCTACAAGATACTGCGGT
TACACTGGTGGGTTGTGGCCACAGGAAGAACATGGCTTATTTTCCCTCAGTCTTCAGGACTTTT
TAAAATGCCCAGTCCTACTCCACAGATGAGACTGGTTTTCAGGCATCTACTCAGCAACTCCAGT
CTTGTCCTAACCATCTGATGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGTGAGCAAGAGATAAGTGAGCTCATTAGGCAAATTTTTTACTTCTCCTCTTCTCT
AGTTTTCTGTTGTGTCGCTGCAGTGTGTCTGGGGACAAAGCCATAAGAAGCCTATCTACTTAAA
ATTCTGCTGTACATAGAAGCCGAGGGCTTGTCTGGATTCAAGAATGATCTTATGCCCAAGCATT
TGCTCTGGTGCTGAATAGTGCAAACTACTGGAACCACCCCAACCCTACCACTGAAACCCCTAGA
CCCAATCCAGTCTCCTGATCCCCAATGGACCACAGTATTCCCAACTTGTTTATAAATAAAGGGA
CGCAGAGTCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_808214	(Get FASTA)	NCBI Sequence Viewer
	NP_997593	(Get FASTA)	NCBI Sequence Viewer
	XP_006528048	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH48917	(Get FASTA)	NCBI Sequence Viewer
	AAO39004	(Get FASTA)	NCBI Sequence Viewer
	AAO39005	(Get FASTA)	NCBI Sequence Viewer
	BAC27658	(Get FASTA)	NCBI Sequence Viewer
	BAC35435	(Get FASTA)	NCBI Sequence Viewer
	BAE28801	(Get FASTA)	NCBI Sequence Viewer
	EDL29742	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000044280
	ENSMUSP00000044280.4
	ENSMUSP00000109566
	ENSMUSP00000109566.3
GenBank Protein	Q811Q9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_808214 ⟸ NM_177546
- Peptide Label:	isoform 2
- UniProtKB:	Q811Q9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDKDEFSRKTLTAPAPFADESSCQCQAPHEKLTVAQARLGTPVDRPVRVYADGIFDLFHSGHAR ALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFL EKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQ RGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFI GNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPNKTSPPSS PKAASASISSMSEGDEDEK hide sequence

RefSeq Acc Id:	NP_997593 ⟸ NM_211138
- Peptide Label:	isoform 1
- UniProtKB:	Q8C085 (UniProtKB/Swiss-Prot), Q8BKD2 (UniProtKB/Swiss-Prot), Q811Q9 (UniProtKB/Swiss-Prot), Q811Q8 (UniProtKB/Swiss-Prot), Q80Y63 (UniProtKB/Swiss-Prot), Q3UEW0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPVLTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADESSCQCQAPHEKLTV AQARLGTPVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMN EAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFV PTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNV EERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSP VSSPTRSRSPSRSPSPTFSWLPNKTSPPSSPKAASASISSMSEGDEDEK hide sequence

RefSeq Acc Id:

XP_006528048 ⟸ XM_006527985

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSCHTSEYEVPFSRVSRVWTLTAPAPFADESSCQCQAPHEKLTVAQARLGTPVDRPVRVYADGI
FDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRD
APWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRD
YDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQ
KWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSW
LPNKTSPPSSPKAASASISSMSEGDEDEK

hide sequence

Ensembl Acc Id:

ENSMUSP00000044280 ⟸ ENSMUST00000045898

Ensembl Acc Id:

ENSMUSP00000109566 ⟸ ENSMUST00000113933

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q811Q9-F1-model_v2	AlphaFold	Q811Q9	1-369	view protein structure

Promoters

RGD ID:

6846067

Promoter ID:

MM_KWN:61145

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, ES_Cell, MEF_B6

Transcripts:

OTTMUST00000043399

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	X	90,920,279 - 90,920,779 (+)	MPROMDB

RGD ID:

6848533

Promoter ID:

MM_ACW:53615

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour

Transcripts:

PCYT1B.DSEP07, PCYT1B.ESEP07

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	X	90,946,216 - 90,946,716 (+)	MPROMDB

RGD ID:

13680930

Promoter ID:

EPDNEW_M24614

Type:

multiple initiation site

Name:

Pcyt1b_2

Description:

Mus musculus phosphate cytidylyltransferase 1, choline, betaisoform , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M24615

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	93,654,856 - 93,654,916	EPDNEW

RGD ID:

13680932

Promoter ID:

EPDNEW_M24615

Type:

initiation region

Name:

Pcyt1b_1

Description:

Mus musculus phosphate cytidylyltransferase 1, choline, betaisoform , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M24614

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	93,675,121 - 93,675,181	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2147987	AgrOrtholog
Ensembl Genes	ENSMUSG00000035246	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000045898	ENTREZGENE
	ENSMUST00000045898.4	UniProtKB/Swiss-Prot
	ENSMUST00000113933	ENTREZGENE
	ENSMUST00000113933.9	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.620	UniProtKB/Swiss-Prot
InterPro	CCT	UniProtKB/Swiss-Prot
	Cyt_trans-like	UniProtKB/Swiss-Prot
	Pcy1-like	UniProtKB/Swiss-Prot
	Rossmann-like_a/b/a_fold	UniProtKB/Swiss-Prot
KEGG Report	mmu:236899	UniProtKB/Swiss-Prot
MGD	MGI:2147987	ENTREZGENE
NCBI Gene	Pcyt1b	ENTREZGENE
PANTHER	CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE B	UniProtKB/Swiss-Prot
	PTHR10739	UniProtKB/Swiss-Prot
Pfam	CTP_transf_like	UniProtKB/Swiss-Prot
PhenoGen	Pcyt1b	PhenoGen
Superfamily-SCOP	Nucleotidylyl transferase	UniProtKB/Swiss-Prot
UniProt	PCY1B_MOUSE	UniProtKB/Swiss-Prot
	Q3UEW0	ENTREZGENE
	Q80Y63	ENTREZGENE
	Q811Q8	ENTREZGENE
	Q811Q9	ENTREZGENE
	Q8BKD2	ENTREZGENE
	Q8C085	ENTREZGENE
UniProt Secondary	Q3UEW0	UniProtKB/Swiss-Prot
	Q80Y63	UniProtKB/Swiss-Prot
	Q811Q8	UniProtKB/Swiss-Prot
	Q8BKD2	UniProtKB/Swiss-Prot
	Q8C085	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-26	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	AW045697	phosphate cytidylyltransferase 1, choline, beta isoform	Symbol and/or name updated	27372883	PROVISIONAL
2024-08-21	AW045697	phosphate cytidylyltransferase 1, choline, beta isoform	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype