Ccn3 (cellular communication network factor 3) - Rat Genome Database

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Gene: Ccn3 (cellular communication network factor 3) Mus musculus
Analyze
Symbol: Ccn3
Name: cellular communication network factor 3
RGD ID: 1551511
MGI Page MGI
Description: Predicted to enable Notch binding activity; heparin binding activity; and integrin binding activity. Involved in several processes, including bone regeneration; negative regulation of cell communication; and type B pancreatic cell proliferation. Located in extracellular space. Is expressed in several structures, including cardiovascular system; central nervous system; genitourinary system; gut; and sensory organ. Orthologous to human CCN3 (cellular communication network factor 3); INTERACTS WITH 3-methylcholanthrene; 4-hydroxyphenyl retinamide; benzalkonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C130088N23Rik; CCN; CCN family member 3; nephroblastoma overexpressed; nephroblastoma overexpressed gene; nephroblastoma overexpressed gene protein homolog; nephroblastoma-overexpressed gene protein homolog; Nov; novH; protein NOV homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,609,306 - 54,617,158 (+)NCBIGRCm39mm39
GRCm39 Ensembl1554,609,098 - 54,617,435 (+)Ensembl
GRCm381554,745,910 - 54,753,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1554,745,702 - 54,754,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv371554,577,483 - 54,585,317 (+)NCBIGRCm37mm9NCBIm37
MGSCv361554,576,011 - 54,583,845 (+)NCBImm8
Celera1556,280,961 - 56,288,712 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-nitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
afimoxifene  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bromochloroacetic acid  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chlorpromazine  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
corticosterone  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
D-mannitol  (EXP)
DDT  (ISO)
dexamethasone  (ISO)
diazepam  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
fipronil  (ISO)
flavonoids  (ISO)
fluoxetine  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoflavones  (ISO)
levonorgestrel  (ISO)
lucanthone  (ISO)
methylisothiazolinone  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
nitrofen  (ISO)
panobinostat  (ISO)
pentanal  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal body wall morphology  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bone structure  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal cartilage development  (IAGP)
abnormal caudal vertebrae morphology  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal heart morphology  (IEA)
abnormal interventricular septum morphology  (IAGP)
abnormal joint mobility  (IAGP)
abnormal kidney morphology  (IEA)
abnormal liver morphology  (IEA)
abnormal osteoblast physiology  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal patella morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skeleton physiology  (IAGP)
abnormal spleen morphology  (IEA)
abnormal vascular smooth muscle physiology  (IAGP)
abnormal vascular wound healing  (IAGP)
anophthalmia  (IEA)
barrel chest  (IAGP)
blind uterus  (IEA)
cataract  (IAGP)
decreased bone trabecula number  (IAGP)
decreased bone volume  (IAGP)
decreased survivor rate  (IAGP)
delayed endochondral bone ossification  (IAGP)
dystrophic cardiac calcinosis  (IAGP)
embryonic lethality, incomplete penetrance  (IAGP)
enlarged cranium  (IAGP)
enlarged heart  (IEA)
enlarged kidney  (IEA)
enlarged spleen  (IEA)
fused tarsal bones  (IAGP)
hip dislocation  (IAGP)
increased atrioventricular cushion size  (IAGP)
increased compact bone thickness  (IAGP)
increased length of long bones  (IAGP)
kidney vascular congestion  (IAGP)
kinked tail  (IAGP)
limp posture  (IAGP)
liver vascular congestion  (IAGP)
long femur  (IAGP)
muscular atrophy  (IAGP)
small spleen  (IEA)
venoocclusion  (IAGP)
ventricular cardiomyopathy  (IAGP)
References

Additional References at PubMed
PMID:8622864   PMID:8975721   PMID:10349636   PMID:11042159   PMID:11066097   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:15213231   PMID:15489334   PMID:15582152  
PMID:16141072   PMID:16141073   PMID:16294274   PMID:16371345   PMID:16600215   PMID:16602821   PMID:17250806   PMID:17500060   PMID:17904117   PMID:18287559   PMID:18289368   PMID:18597638  
PMID:19359517   PMID:19394326   PMID:19934377   PMID:20139355   PMID:20182440   PMID:20637190   PMID:20720003   PMID:21268093   PMID:21518474   PMID:21871891   PMID:21873635   PMID:22808246  
PMID:23536580   PMID:23653360   PMID:23705021   PMID:23785511   PMID:23839921   PMID:24006456   PMID:24722330   PMID:24952961   PMID:25541297   PMID:25871796   PMID:26367310   PMID:26974158  
PMID:27284105   PMID:28202523   PMID:28527710   PMID:28576832   PMID:29287726   PMID:30410445   PMID:30478225   PMID:30538222   PMID:31241463   PMID:31597102   PMID:32243503   PMID:32325033  
PMID:32520726   PMID:32634398   PMID:32651278   PMID:33066270   PMID:33586490  


Genomics

Comparative Map Data
Ccn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,609,306 - 54,617,158 (+)NCBIGRCm39mm39
GRCm39 Ensembl1554,609,098 - 54,617,435 (+)Ensembl
GRCm381554,745,910 - 54,753,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1554,745,702 - 54,754,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv371554,577,483 - 54,585,317 (+)NCBIGRCm37mm9NCBIm37
MGSCv361554,576,011 - 54,583,845 (+)NCBImm8
Celera1556,280,961 - 56,288,712 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.49NCBI
CCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8119,416,446 - 119,424,434 (+)EnsemblGRCh38hg38GRCh38
GRCh388119,416,446 - 119,424,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378120,428,686 - 120,436,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,497,882 - 120,505,776 (+)NCBINCBI36hg18NCBI36
Build 348120,497,881 - 120,505,776NCBI
Celera8116,617,968 - 116,626,094 (+)NCBI
Cytogenetic Map8q24.12NCBI
HuRef8115,749,069 - 115,757,195 (+)NCBIHuRef
CHM1_18120,469,559 - 120,477,685 (+)NCBICHM1_1
Ccn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2786,094,000 - 86,101,022 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl786,094,000 - 86,101,019 (+)Ensembl
Rnor_6.0794,375,134 - 94,382,154 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,375,020 - 94,383,024 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,015,159 - 95,022,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,162,676 - 91,169,696 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1791,196,905 - 91,203,925 (+)NCBI
Celera782,897,053 - 82,904,052 (+)NCBICelera
Cytogenetic Map7q32NCBI
Ccn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541725,218,613 - 25,225,755 (+)NCBIChiLan1.0ChiLan1.0
CCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18118,856,969 - 118,865,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8118,855,445 - 118,865,039 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08116,105,935 - 116,114,241 (+)NCBIMhudiblu_PPA_v0panPan3
CCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,507,586 - 18,515,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,507,580 - 18,514,619 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,513,047 - 18,521,248 (+)NCBI
ROS_Cfam_1.01318,834,948 - 18,843,041 (+)NCBI
UMICH_Zoey_3.11318,562,694 - 18,570,869 (+)NCBI
UNSW_CanFamBas_1.01318,661,289 - 18,669,494 (+)NCBI
UU_Cfam_GSD_1.01318,892,544 - 18,900,635 (+)NCBI
Ccn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,752,276 - 19,759,704 (-)NCBI
SpeTri2.0NW_00493647027,178,439 - 27,185,554 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,505,700 - 19,514,797 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,505,698 - 19,514,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,525,288 - 20,534,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18113,989,862 - 113,998,187 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603926,294,069 - 26,302,119 (-)NCBIVero_WHO_p1.0
Ccn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476317,573,693 - 17,580,884 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
X96585  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381554,752,593 - 54,752,729UniSTSGRCm38
MGSCv371554,584,148 - 54,584,284UniSTSGRCm37
Celera1556,287,566 - 56,287,701UniSTS
Cytogenetic Map15D1UniSTS
cM Map1522.5UniSTS
Whitehead/MRC_RH15492.57UniSTS
Nov  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381554,752,223 - 54,752,730UniSTSGRCm38
MGSCv371554,577,925 - 54,579,393UniSTSGRCm37
MGSCv371554,577,767 - 54,577,888UniSTSGRCm37
Celera1556,287,196 - 56,287,702UniSTS
Cytogenetic Map15D1UniSTS
cM Map1522.5UniSTS
cM Map1522.5UniSTS
Nov  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D1UniSTS
cM Map1522.5UniSTS
Nov  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381554,746,212 - 54,746,333UniSTSGRCm38
MGSCv371554,577,767 - 54,577,888UniSTSGRCm37
Celera1556,281,245 - 56,281,366UniSTS
Cytogenetic Map15D1UniSTS
Nov  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381554,746,370 - 54,747,838UniSTSGRCm38
MGSCv371554,577,925 - 54,579,393UniSTSGRCm37
Celera1556,281,403 - 56,282,831UniSTS
Cytogenetic Map15D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15344490771325689Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15610000068400000Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15610000071600000Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15610000072600000Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15720000055400000Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15760000055400000Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15760000059400000Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927293656323454Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
14928313Manh78_mmandible shape 78 (mouse)152148439755484397Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152273036956730369Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2302961857029764Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152459917658599409Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152543241059432532Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2562158259621582Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152644838460448484Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152644838460448484Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162644838460448484Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152644838460448484Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660000066500000Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152841925062419343Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152841925062419343Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930000076200000Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020000058100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153414129868141408Mouse
1301324Cdif_mcolor difference (mouse)Not determined153611251070112623Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800000086800000Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153923699973237197Mouse
1300949Lore5_mloss of righting induced by ethanol 5 (mouse)Not determined154015604558158901Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4031362672500731Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154468146478681588Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154498729278987432Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154570000069300000Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154651779780517996Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154651779780517996Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154743448581434630Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154753774781537842Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154859351382593647Mouse
1357661Eae2b_msusceptibility to experimental allergic encephalomyelitis 2b (mouse)Not determined155114129865072459Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155114129876910293Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155128885985288984Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155154651285546662Mouse
35673313Ari8_mantibody response to influenza 8, day 15-45, TotalG (mouse)155160000055000000Mouse
10412067Pain2_mpain 2 (mouse)Not determined155177349085773777Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155181398385822600Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155193466685934802Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:444
Count of miRNA genes:288
Interacting mature miRNAs:345
Transcripts:ENSMUST00000050027
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000050027   ⟹   ENSMUSP00000054389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1554,609,098 - 54,617,435 (+)Ensembl
GRCm38.p6 Ensembl1554,745,702 - 54,754,039 (+)Ensembl
RefSeq Acc Id: NM_010930   ⟹   NP_035060
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391554,609,306 - 54,617,158 (+)NCBI
GRCm381554,745,910 - 54,753,762 (+)NCBI
MGSCv371554,577,483 - 54,585,317 (+)RGD
Celera1556,280,961 - 56,288,712 (+)RGD
cM Map15 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035060   ⟸   NM_010930
- Peptide Label: precursor
- UniProtKB: Q64299 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000054389   ⟸   ENSMUST00000050027
Protein Domains
CTCK   IGFBP N-terminal   TSP type-1   VWFC

Promoters
RGD ID:8683740
Promoter ID:EPDNEW_M19900
Type:initiation region
Name:Nov_1
Description:Mus musculus nephroblastoma overexpressed gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381554,745,910 - 54,745,970EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109185 AgrOrtholog
Ensembl Genes ENSMUSG00000037362 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000054389 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000050027 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Cys_knot_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hormone_CN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGFBP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGFBP_CNN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Insulin_GF-bd_Cys-rich_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_CCN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18133 UniProtKB/Swiss-Prot
MGD MGI:109185 ENTREZGENE
NCBI Gene 18133 ENTREZGENE
Pfam Cys_knot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGFBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_CCN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccn3 PhenoGen
PIRSF IGFBP_rP_CNN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CTCK_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTCK_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGFBP_N_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGFBP_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00041 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00121 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CCN3_MOUSE UniProtKB/Swiss-Prot
  Q3U2X7_MOUSE UniProtKB/TrEMBL
  Q64299 ENTREZGENE
UniProt Secondary Q8CA67 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-13 Ccn3  cellular communication network factor 3  Nov  nephroblastoma overexpressed gene  Symbol and/or name change 5135510 APPROVED