Jam3 (junction adhesion molecule 3) - Rat Genome Database

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Gene: Jam3 (junction adhesion molecule 3) Mus musculus
Analyze
Symbol: Jam3
Name: junction adhesion molecule 3
RGD ID: 1551450
MGI Page MGI
Description: Enables identical protein binding activity and integrin binding activity. Involved in angiogenesis; cell-cell adhesion; and hematopoietic stem cell migration to bone marrow. Acts upstream of or within several processes, including leukocyte migration involved in inflammatory response; myeloid progenitor cell differentiation; and regulation of actin cytoskeleton organization by cell-cell adhesion. Located in Schmidt-Lanterman incisure; bicellular tight junction; and paranodal junction. Is expressed in several structures, including alimentary system; brain; eye; genitourinary system; and immune system. Orthologous to human JAM3 (junctional adhesion molecule 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110002N23Rik; C85515; JAM-; JAM-2; JAM-3; JAM-C; Jcam; Jcam3; junction cell adhesion molecule 3; junction cell adhesion molecule C; junctional adhesion molecule 3; junctional adhesion molecule C
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39927,008,680 - 27,066,739 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl927,008,680 - 27,066,717 (-)EnsemblGRCm39 Ensembl
GRCm38927,097,384 - 27,155,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl927,097,384 - 27,155,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv37926,904,969 - 26,962,965 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36926,846,830 - 26,904,826 (-)NCBIMGSCv36mm8
Celera924,355,390 - 24,413,352 (-)NCBICelera
Cytogenetic Map9A4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetohydrazide  (EXP)
aconitine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
anthracen-2-amine  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
clobetasol  (EXP)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diethyl maleate  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
fipronil  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
Heliotrine  (ISO)
indometacin  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (ISO)
methylmercury(1+)  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
senecionine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
T-2 toxin  (ISO)
tamoxifen  (EXP)
terbufos  (ISO)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
tunicamycin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cerebral cortex pyramidal cell morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal digestive system physiology  (IAGP)
abnormal gait  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal innervation  (IAGP)
abnormal manchette morphology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal skeletal muscle morphology  (IEA)
abnormal sleep behavior  (IEA)
abnormal spermatid morphology  (IAGP)
arrest of spermatogenesis  (IAGP)
azoospermia  (IAGP)
cerebellum atrophy  (IAGP)
cyanosis  (IAGP)
decreased fasting circulating glucose level  (IEA)
decreased locomotor activity  (IAGP)
decreased male germ cell number  (IAGP)
decreased metastatic potential  (IAGP)
decreased neutrophil cell number  (IAGP)
dilated lateral ventricle  (IAGP)
disheveled coat  (IAGP)
enlarged cranium  (IAGP)
enlarged esophagus  (IAGP)
gliosis  (IAGP)
globozoospermia  (IAGP)
hydrocephaly  (IAGP)
increased bone marrow cell number  (IAGP)
increased common myeloid progenitor cell number  (IAGP)
increased erythroid progenitor cell number  (IAGP)
increased granulocyte number  (IAGP)
increased male germ cell apoptosis  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
intracranial hemorrhage  (IAGP)
intraventricular hemorrhage  (IAGP)
lethargy  (IAGP)
lung inflammation  (IAGP)
male infertility  (IAGP)
obstructive hydrocephaly  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
small testis  (IAGP)
subarachnoid hemorrhage  (IAGP)
thin cerebral cortex  (IAGP)
tremors  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. The spatiotemporal localization of JAM-C following sciatic nerve crush in adult rats. Avari P, etal., Brain Behav. 2012 Jul;2(4):402-14. doi: 10.1002/brb3.63.
2. Targeting of junctional adhesion molecule-C inhibits experimental choroidal neovascularization. Hou X, etal., Invest Ophthalmol Vis Sci. 2012 Mar 21;53(3):1584-91. doi: 10.1167/iovs.11-9005. Print 2012 Mar.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5. Antibody against junctional adhesion molecule-C inhibits angiogenesis and tumor growth. Lamagna C, etal., Cancer Res. 2005 Jul 1;65(13):5703-10.
6. Junctional adhesion molecules (JAM)-B and -C contribute to leukocyte extravasation to the skin and mediate cutaneous inflammation. Ludwig RJ, etal., J Invest Dermatol. 2005 Nov;125(5):969-76.
7. Differential expression of junctional adhesion molecules in different stages of systemic sclerosis. Manetti M, etal., Arthritis Rheum. 2013 Jan;65(1):247-57. doi: 10.1002/art.37712.
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. The proadhesive phenotype of systemic sclerosis skin promotes myeloid cell adhesion via ICAM-1 and VCAM-1. Rabquer BJ, etal., Rheumatology (Oxford). 2009 Jul;48(7):734-40. doi: 10.1093/rheumatology/kep091. Epub 2009 May 13.
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10779521   PMID:10922068   PMID:11036763   PMID:11042159   PMID:11076861   PMID:11739175   PMID:12208882   PMID:12477932   PMID:12810109   PMID:14519386  
PMID:15372036   PMID:15485832   PMID:15489334   PMID:15811349   PMID:15879142   PMID:16093349   PMID:16141072   PMID:16141073   PMID:16195363   PMID:16410001   PMID:16602821   PMID:17099249  
PMID:17116731   PMID:17227766   PMID:17442972   PMID:17455169   PMID:17612407   PMID:17625065   PMID:17853450   PMID:18048693   PMID:18055550   PMID:19109565   PMID:19342649   PMID:19533782  
PMID:19574560   PMID:20562862   PMID:21097846   PMID:21147852   PMID:21267068   PMID:21593193   PMID:21685324   PMID:21706006   PMID:21868569   PMID:21873635   PMID:22090315   PMID:22114908  
PMID:22511936   PMID:23029139   PMID:23068611   PMID:23372751   PMID:23825230   PMID:24194600   PMID:24357068   PMID:24952961   PMID:25474593   PMID:25826454   PMID:26047922   PMID:26123848  
PMID:26311310   PMID:26841848   PMID:27111582   PMID:27626380   PMID:28203682   PMID:29378216   PMID:29437010   PMID:29584620   PMID:29753567   PMID:30088666   PMID:30148763   PMID:32054130  
PMID:32325033   PMID:34861679   PMID:36048019  


Genomics

Comparative Map Data
Jam3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39927,008,680 - 27,066,739 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl927,008,680 - 27,066,717 (-)EnsemblGRCm39 Ensembl
GRCm38927,097,384 - 27,155,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl927,097,384 - 27,155,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv37926,904,969 - 26,962,965 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36926,846,830 - 26,904,826 (-)NCBIMGSCv36mm8
Celera924,355,390 - 24,413,352 (-)NCBICelera
Cytogenetic Map9A4NCBI
JAM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811134,069,072 - 134,152,001 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11134,069,071 - 134,152,001 (+)EnsemblGRCh38hg38GRCh38
GRCh3711133,938,967 - 134,021,896 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611133,444,030 - 133,526,861 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411133,444,029 - 133,526,858NCBI
Celera11131,112,218 - 131,194,832 (+)NCBICelera
Cytogenetic Map11q25NCBI
HuRef11129,893,248 - 129,976,188 (+)NCBIHuRef
CHM1_111133,826,755 - 133,908,474 (+)NCBICHM1_1
T2T-CHM13v2.011134,112,013 - 134,194,140 (+)NCBIT2T-CHM13v2.0
Jam3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2825,508,461 - 25,569,306 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl825,507,057 - 25,569,355 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx829,550,421 - 29,611,261 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0827,844,708 - 27,905,552 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0825,724,719 - 25,785,571 (-)NCBIRnor_WKY
Rnor_6.0828,147,110 - 28,208,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl828,147,111 - 28,208,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0828,166,275 - 28,227,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4826,697,127 - 26,758,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1826,697,127 - 26,758,579 (-)NCBI
Celera826,995,820 - 27,056,659 (-)NCBICelera
Cytogenetic Map8q13NCBI
Jam3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541234,901,681 - 34,967,394 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541234,901,850 - 34,967,394 (+)NCBIChiLan1.0ChiLan1.0
JAM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111132,783,580 - 132,864,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11132,783,580 - 132,864,657 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011128,916,024 - 129,006,497 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JAM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.151,082,619 - 1,165,188 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl51,084,560 - 1,165,121 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha51,202,269 - 1,285,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.051,038,590 - 1,121,616 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl51,038,594 - 1,121,627 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.151,071,730 - 1,155,064 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.051,072,117 - 1,155,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.051,109,856 - 1,192,622 (-)NCBIUU_Cfam_GSD_1.0
Jam3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947115,840,860 - 115,913,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366841,692,089 - 1,762,087 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366841,689,594 - 1,762,066 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl960,613,400 - 60,738,924 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1960,629,245 - 60,738,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2967,205,386 - 67,284,770 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11125,136,963 - 125,211,424 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666043831,362 - 904,938 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jam3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248128,643,921 - 8,707,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248128,644,002 - 8,707,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:522
Count of miRNA genes:358
Interacting mature miRNAs:400
Transcripts:ENSMUST00000034472, ENSMUST00000167074
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse

Markers in Region
RH127200  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38927,097,514 - 27,097,713UniSTSGRCm38
MGSCv37926,905,099 - 26,905,298UniSTSGRCm37
Celera924,355,520 - 24,355,719UniSTS
Cytogenetic Map9A4UniSTS
UniSTS:236082  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38927,096,798 - 27,096,891UniSTSGRCm38
MGSCv37926,904,383 - 26,904,476UniSTSGRCm37
Celera924,354,804 - 24,354,897UniSTS
Cytogenetic Map9A4UniSTS
Jam3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9A4UniSTS
cM Map9 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034472   ⟹   ENSMUSP00000034472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl927,008,680 - 27,066,689 (-)Ensembl
GRCm38.p6 Ensembl927,097,384 - 27,155,393 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl927,011,964 - 27,066,714 (-)Ensembl
GRCm38.p6 Ensembl927,100,668 - 27,155,418 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl927,011,427 - 27,060,031 (-)Ensembl
GRCm38.p6 Ensembl927,100,131 - 27,148,735 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl927,016,517 - 27,066,717 (-)Ensembl
GRCm38.p6 Ensembl927,105,221 - 27,155,421 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl927,011,383 - 27,037,846 (-)Ensembl
GRCm38.p6 Ensembl927,100,087 - 27,126,550 (-)Ensembl
RefSeq Acc Id: NM_023277   ⟹   NP_075766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39927,008,680 - 27,066,717 (-)NCBI
GRCm38927,097,384 - 27,155,421 (-)NCBI
MGSCv37926,904,969 - 26,962,965 (-)RGD
Celera924,355,390 - 24,413,393 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030244741   ⟹   XP_030100601
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39927,008,680 - 27,061,985 (-)NCBI
GRCm38927,097,384 - 27,152,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155416   ⟹   XP_036011309
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39927,010,177 - 27,066,739 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_075766   ⟸   NM_023277
- Peptide Label: precursor
- UniProtKB: Q9EPK4 (UniProtKB/Swiss-Prot),   Q9D8B7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100601   ⟸   XM_030244741
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000034472   ⟸   ENSMUST00000034472
RefSeq Acc Id: XP_036011309   ⟸   XM_036155416
- Peptide Label: isoform X2
Protein Domains
Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D8B7-F1-model_v2 AlphaFold Q9D8B7 1-310 view protein structure

Promoters
RGD ID:6844705
Promoter ID:MM_KWN:56696
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_023277,   UC009OQK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36926,962,681 - 26,963,181 (-)MPROMDB
RGD ID:8669088
Promoter ID:EPDNEW_M12575
Type:initiation region
Name:Jam3_1
Description:Mus musculus junction adhesion molecule 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38927,155,379 - 27,155,439EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933825 AgrOrtholog
Ensembl Genes ENSMUSG00000031990 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034472 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034472 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
  JAM-C UniProtKB/Swiss-Prot
KEGG Report mmu:83964 UniProtKB/Swiss-Prot
MGD MGI:1933825 ENTREZGENE
NCBI Gene 83964 ENTREZGENE
PANTHER PTHR44598 UniProtKB/Swiss-Prot
Pfam V-set UniProtKB/Swiss-Prot
PhenoGen Jam3 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt JAM3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9EPK4 ENTREZGENE
UniProt Secondary Q8BT59 UniProtKB/Swiss-Prot
  Q9D1M9 UniProtKB/Swiss-Prot
  Q9EPK4 UniProtKB/Swiss-Prot