Sptbn1 (spectrin beta, non-erythrocytic 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sptbn1 (spectrin beta, non-erythrocytic 1) Mus musculus
Analyze
Symbol: Sptbn1
Name: spectrin beta, non-erythrocytic 1
RGD ID: 1551425
MGI Page MGI
Description: Predicted to enable GTPase binding activity; actin filament binding activity; and ankyrin binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in central nervous system formation and protein localization to plasma membrane. Acts upstream of or within regulation of SMAD protein signal transduction. Located in several cellular components, including M band; axolemma; and cuticular plate. Is expressed in heart; liver; lung; nervous system; and spleen. Used to study Beckwith-Wiedemann syndrome. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930031C03Rik; AL033301; beta fodrin; beta-II spectrin; beta-spectrin 2, non-erythrocytic; brain spectrin; elf; elf1; elf3; embryonic liver fodrin; fodrin beta chain; KIAA4049; mKIAA4049; non-erythrocytic; Sp; spectrin beta 2; spectrin beta chain, brain 1; spectrin beta chain, non-erythrocytic 1; spectrin G; spectrin, non-erythroid beta chain 1; Spn; Spnb-2; Spnb2; SPTB2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,049,395 - 30,218,384 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,049,395 - 30,218,175 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381130,099,395 - 30,268,384 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,099,395 - 30,268,175 (-)Ensemblmm10GRCm38
MGSCv371129,999,395 - 30,119,772 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361130,000,434 - 30,119,772 (-)NCBIMGSCv36mm8
Celera1132,468,358 - 32,593,393 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1117.44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-vinylcyclohexene dioxide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetohydrazide  (EXP)
acrolein  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
AM-251  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
apigenin  (EXP)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
chrysene  (EXP)
cisplatin  (EXP,ISO)
clobetasol  (EXP)
cocaine  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
disulfiram  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fonofos  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fumonisin B1  (EXP)
furfural  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hydrogen cyanide  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
Methylazoxymethanol acetate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nitrates  (EXP)
ochratoxin A  (ISO)
okadaic acid  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
potassium cyanide  (EXP)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP,ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (ISO)
sulindac sulfide  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone undecanoate  (ISO)
tetraphene  (EXP)
thapsigargin  (EXP)
thimerosal  (ISO)
titanium dioxide  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tungsten  (EXP)
ursodeoxycholic acid  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc protoporphyrin  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axolemma  (IDA)
cell junction  (IBA)
cell projection  (IBA)
cortical actin cytoskeleton  (IBA,IEA)
cortical cytoskeleton  (IDA)
cuticular plate  (IDA)
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA)
cytosol  (IEA,ISO,ISS,TAS)
endomembrane system  (IEA)
glutamatergic synapse  (IEA,ISO)
M band  (IDA,IEA)
membrane  (IDA,IEA)
nucleolus  (IEA,ISO)
nucleus  (IDA,IEA)
plasma membrane  (IBA,IDA,IEA,ISO)
postsynapse  (IEA,ISO)
postsynaptic density  (IDA)
protein-containing complex  (IEA,ISO)
spectrin  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axon initial segment morphology  (IAGP)
abnormal brain development  (IAGP)
abnormal cell cycle  (IAGP)
abnormal cell cycle checkpoint function  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal fetal cardiomyocyte morphology  (IAGP)
abnormal fetal cardiomyocyte physiology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart ventricle morphology  (IAGP)
abnormal heart ventricle wall thickness  (IAGP)
abnormal liver morphology  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal outer ear morphology  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
absent coronary vessels  (IAGP)
adrenal gland cyst  (IAGP)
alopecia  (IAGP)
decreased body weight  (IEA)
decreased circulating alanine transaminase level  (IEA)
decreased circulating cholesterol level  (IEA)
decreased circulating HDL cholesterol level  (IEA)
decreased circulating LDL cholesterol level  (IEA)
decreased circulating serum albumin level  (IEA)
decreased circulating total protein level  (IEA)
decreased embryo size  (IAGP)
decreased fetal cardiomyocyte proliferation  (IAGP)
decreased hepatocyte apoptosis  (IAGP)
decreased hepatocyte proliferation  (IAGP)
decreased lactate dehydrogenase level  (IEA)
decreased liver tumor incidence  (IAGP)
decreased mitotic index  (IAGP)
edema  (IAGP)
enlarged heart  (IAGP)
enlarged kidney  (IAGP)
enlarged testis  (IAGP)
hemorrhage  (IAGP)
increased adenoma incidence  (IAGP)
increased adrenal cortical tumor incidence  (IAGP)
increased body size  (IAGP)
increased carcinoma incidence  (IAGP)
increased fetal cardiomyocyte apoptosis  (IAGP)
increased glioma incidence  (IAGP)
increased hepatocellular carcinoma incidence  (IAGP)
increased liver tumor incidence  (IAGP)
increased lung adenocarcinoma incidence  (IAGP)
increased lymphoma incidence  (IAGP)
increased ovary tumor incidence  (IAGP)
increased renal carcinoma incidence  (IAGP)
increased sarcoma incidence  (IAGP)
increased testis tumor incidence  (IAGP)
increased thyroid carcinoma incidence  (IAGP)
increased tongue size  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
liver hypoplasia  (IAGP)
myocardial trabeculae hypoplasia  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
small heart  (IAGP)
thin left ventricle myocardium compact layer  (IAGP)
ventricular septal defect  (IAGP)
visceromegaly  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. TGF-beta signaling pathway inactivation and cell cycle deregulation in the development of gastric cancer: role of the beta-spectrin, ELF. Kim SS, etal., Biochem Biophys Res Commun. 2006 Jun 16;344(4):1216-23. Epub 2006 Apr 19.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Disruption of transforming growth factor-beta signaling in ELF beta-spectrin-deficient mice. Tang Y, etal., Science. 2003 Jan 24;299(5606):574-7.
11. Linkage mapping of 40 randomly isolated liver cDNA clones in the mouse. Warden CH, etal., Genomics 1993 Nov;18(2):295-307.
Additional References at PubMed
PMID:1467942   PMID:1638088   PMID:1742606   PMID:3862089   PMID:7565694   PMID:7588597   PMID:7671812   PMID:7698769   PMID:8199405   PMID:8208297   PMID:8479293   PMID:8751373  
PMID:8776664   PMID:8827514   PMID:8889548   PMID:9115173   PMID:9196007   PMID:9199409   PMID:9211987   PMID:9321482   PMID:9551868   PMID:9653646   PMID:9927192   PMID:10349636  
PMID:10922068   PMID:11042159   PMID:11076861   PMID:11210191   PMID:11294830   PMID:11544199   PMID:11564759   PMID:11923214   PMID:12149647   PMID:12477932   PMID:12520002   PMID:12522145  
PMID:12904583   PMID:14610273   PMID:14681479   PMID:15262991   PMID:15566516   PMID:15572359   PMID:15610403   PMID:15899814   PMID:16141072   PMID:16141073   PMID:16288220   PMID:16452087  
PMID:16452088   PMID:16512683   PMID:16551741   PMID:16884701   PMID:16959763   PMID:17114649   PMID:17620337   PMID:17967808   PMID:18263735   PMID:18614564   PMID:18704924   PMID:18723693  
PMID:18796539   PMID:18799693   PMID:19521500   PMID:19552622   PMID:20739274   PMID:21122108   PMID:21186323   PMID:21267068   PMID:21388516   PMID:21565611   PMID:21566095   PMID:21677750  
PMID:21745462   PMID:21873635   PMID:21966409   PMID:22159418   PMID:22541060   PMID:22632975   PMID:22794259   PMID:23180766   PMID:23870131   PMID:24064296   PMID:24217619   PMID:24302573  
PMID:24457600   PMID:25632041   PMID:25737280   PMID:26167872   PMID:26465331   PMID:26784546   PMID:26884715   PMID:27507650   PMID:28134616   PMID:28378742   PMID:28634551   PMID:28671696  
PMID:28706196   PMID:29199018   PMID:29254152   PMID:29459677   PMID:29518331   PMID:29720258   PMID:29853631   PMID:30333137   PMID:30409884   PMID:30562941   PMID:30973865   PMID:31001589  
PMID:31040226   PMID:31042147   PMID:31209033   PMID:32325033   PMID:32425157   PMID:33046506   PMID:33754058   PMID:33896079   PMID:34082069   PMID:34211179   PMID:34321999   PMID:34732824  
PMID:34737104   PMID:34812142   PMID:35506565   PMID:35817960   PMID:36114006   PMID:36293380   PMID:36417873   PMID:36604600   PMID:36604605   PMID:36653359   PMID:37142655   PMID:37369589  
PMID:38187761   PMID:38346162   PMID:38355793   PMID:38441922   PMID:38822427   PMID:39217614   PMID:39276238  


Genomics

Comparative Map Data
Sptbn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,049,395 - 30,218,384 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,049,395 - 30,218,175 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381130,099,395 - 30,268,384 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,099,395 - 30,268,175 (-)Ensemblmm10GRCm38
MGSCv371129,999,395 - 30,119,772 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361130,000,434 - 30,119,772 (-)NCBIMGSCv36mm8
Celera1132,468,358 - 32,593,393 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1117.44NCBI
SPTBN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38254,456,327 - 54,671,446 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl254,456,327 - 54,671,446 (+)Ensemblhg38GRCh38
GRCh37254,683,464 - 54,898,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36254,536,958 - 54,752,087 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34254,697,181 - 54,799,245NCBI
Celera254,523,740 - 54,739,107 (+)NCBICelera
Cytogenetic Map2p16.2NCBI
HuRef254,485,674 - 54,631,223 (+)NCBIHuRef
CHM1_1254,613,602 - 54,828,713 (+)NCBICHM1_1
T2T-CHM13v2.0254,450,519 - 54,665,452 (+)NCBIT2T-CHM13v2.0
Sptbn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814108,042,629 - 108,217,884 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14108,042,629 - 108,217,836 (-)EnsemblGRCr8
mRatBN7.214103,841,713 - 104,016,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,842,684 - 104,008,507 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14108,170,773 - 108,336,283 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014109,405,426 - 109,571,087 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014105,877,837 - 106,043,513 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014114,517,839 - 114,700,199 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14114,518,816 - 114,692,764 (-)Ensemblrn6Rnor6.0
Rnor_5.014114,188,053 - 114,356,233 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414111,076,741 - 111,246,286 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera14102,708,226 - 102,873,561 (-)NCBICelera
RGSC_v3.114111,255,392 - 111,259,578 (+)NCBI
Cytogenetic Map14q22NCBI
Sptbn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544120,248,578 - 20,378,038 (+)Ensembl
ChiLan1.0NW_00495544120,248,578 - 20,378,038 (+)NCBIChiLan1.0ChiLan1.0
SPTBN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21271,664,972 - 71,804,527 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A71,668,924 - 71,876,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A54,608,711 - 54,816,083 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A55,822,415 - 55,961,925 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A55,822,415 - 55,961,925 (+)EnsemblpanPan2panpan1.1
SPTBN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11055,429,989 - 55,571,917 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1055,429,940 - 55,571,916 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1055,325,541 - 55,524,492 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01056,373,040 - 56,571,581 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1056,374,468 - 56,571,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,064,719 - 56,261,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01056,353,568 - 56,552,022 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01056,700,647 - 56,842,710 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sptbn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629227,462,919 - 27,650,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936491956,986 - 1,108,640 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936491920,830 - 1,108,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTBN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl386,585,054 - 86,784,149 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1386,585,225 - 86,784,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPTBN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11452,266,197 - 52,487,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1452,262,416 - 52,487,112 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604559,248,465 - 59,459,178 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sptbn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,947,273 - 7,089,924 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248336,947,611 - 7,144,688 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Sptbn1
5602 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1715
Count of miRNA genes:766
Interacting mature miRNAs:941
Transcripts:ENSMUST00000006629, ENSMUST00000011877, ENSMUST00000102838, ENSMUST00000124231, ENSMUST00000127209, ENSMUST00000133466, ENSMUST00000145315, ENSMUST00000149117
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
25394552Skmw69_mskeletal muscle weight 69, TA (mouse)112969902932329535Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse

Markers in Region
28.MMHAP62FRB10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,169,042 - 30,169,199UniSTSGRCm38
MGSCv371130,069,042 - 30,069,199UniSTSGRCm37
Celera1132,543,754 - 32,543,911UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead_YAC7 UniSTS
RH124187  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
UniSTS:236544  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,105,715 - 30,105,803UniSTSGRCm38
MGSCv371130,005,715 - 30,005,803UniSTSGRCm37
Celera1132,474,678 - 32,474,766UniSTS
Cytogenetic Map11A3.3UniSTS
UniSTS:224853  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,106,847 - 30,106,935UniSTSGRCm38
MGSCv371130,006,847 - 30,006,935UniSTSGRCm37
Celera1132,475,810 - 32,475,898UniSTS
Cytogenetic Map11A3.3UniSTS
Spnb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,216,886 - 30,217,351UniSTSGRCm38
Celera1132,590,509 - 32,590,974UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map1113.0UniSTS
Spnb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
cM Map1113.0UniSTS
cM Map1117.44UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02168822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF016040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF017112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF047686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF539329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK627078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M74773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000006629   ⟹   ENSMUSP00000006629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,049,395 - 30,218,169 (-)Ensembl
GRCm38.p6 Ensembl1130,099,395 - 30,268,169 (-)Ensembl
Ensembl Acc Id: ENSMUST00000011877   ⟹   ENSMUSP00000011877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,049,396 - 30,169,772 (-)Ensembl
GRCm38.p6 Ensembl1130,099,396 - 30,219,772 (-)Ensembl
Ensembl Acc Id: ENSMUST00000102838   ⟹   ENSMUSP00000099902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,056,785 - 30,148,257 (-)Ensembl
GRCm38.p6 Ensembl1130,106,785 - 30,198,257 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124231   ⟹   ENSMUSP00000114841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,059,948 - 30,217,214 (-)Ensembl
GRCm38.p6 Ensembl1130,109,948 - 30,267,214 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,059,871 - 30,061,359 (-)Ensembl
GRCm38.p6 Ensembl1130,109,871 - 30,111,359 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,051,513 - 30,055,610 (-)Ensembl
GRCm38.p6 Ensembl1130,101,513 - 30,105,610 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,049,396 - 30,053,249 (-)Ensembl
GRCm38.p6 Ensembl1130,099,396 - 30,103,249 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,166,659 - 30,218,175 (-)Ensembl
GRCm38.p6 Ensembl1130,216,659 - 30,268,175 (-)Ensembl
RefSeq Acc Id: NM_009260   ⟹   NP_033286
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,056,843 - 30,148,257 (-)NCBI
GRCm381130,106,843 - 30,198,257 (-)NCBI
MGSCv371129,999,395 - 30,119,772 (-)RGD
Celera1132,468,358 - 32,593,393 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_175836   ⟹   NP_787030
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,169,772 (-)NCBI
GRCm381130,099,395 - 30,219,772 (-)NCBI
MGSCv371129,999,395 - 30,119,772 (-)RGD
Celera1132,468,358 - 32,593,393 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514599   ⟹   XP_006514662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,218,384 (-)NCBI
GRCm381130,099,395 - 30,268,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514600   ⟹   XP_006514663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,217,812 (-)NCBI
GRCm381130,099,395 - 30,267,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514601   ⟹   XP_006514664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,148,599 (-)NCBI
GRCm381130,099,395 - 30,198,599 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245736   ⟹   XP_030101596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,193,339 (-)NCBI
GRCm381130,099,395 - 30,243,339 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936897
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,218,384 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936898
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391130,049,395 - 30,148,257 (-)NCBI
Sequence:
RefSeq Acc Id: NP_787030   ⟸   NM_175836
- Peptide Label: isoform 1
- UniProtKB: Q5SQL9 (UniProtKB/Swiss-Prot),   Q5SQL8 (UniProtKB/Swiss-Prot),   Q3TEM7 (UniProtKB/Swiss-Prot),   A2AFU1 (UniProtKB/Swiss-Prot),   Q9QWJ7 (UniProtKB/Swiss-Prot),   Q62261 (UniProtKB/Swiss-Prot),   A0A0A0MQG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033286   ⟸   NM_009260
- Peptide Label: isoform 2
- UniProtKB: A0A0A0MQG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514662   ⟸   XM_006514599
- Peptide Label: isoform X1
- UniProtKB: Q5SQL9 (UniProtKB/Swiss-Prot),   Q5SQL8 (UniProtKB/Swiss-Prot),   Q3TEM7 (UniProtKB/Swiss-Prot),   A2AFU1 (UniProtKB/Swiss-Prot),   Q9QWJ7 (UniProtKB/Swiss-Prot),   Q62261 (UniProtKB/Swiss-Prot),   A0A0A0MQG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514663   ⟸   XM_006514600
- Peptide Label: isoform X1
- UniProtKB: Q5SQL9 (UniProtKB/Swiss-Prot),   Q5SQL8 (UniProtKB/Swiss-Prot),   Q3TEM7 (UniProtKB/Swiss-Prot),   A2AFU1 (UniProtKB/Swiss-Prot),   Q9QWJ7 (UniProtKB/Swiss-Prot),   Q62261 (UniProtKB/Swiss-Prot),   A0A0A0MQG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514664   ⟸   XM_006514601
- Peptide Label: isoform X2
- UniProtKB: A0A0A0MQG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101596   ⟸   XM_030245736
- Peptide Label: isoform X1
- UniProtKB: Q62261 (UniProtKB/Swiss-Prot),   Q5SQL9 (UniProtKB/Swiss-Prot),   Q5SQL8 (UniProtKB/Swiss-Prot),   Q3TEM7 (UniProtKB/Swiss-Prot),   A2AFU1 (UniProtKB/Swiss-Prot),   Q9QWJ7 (UniProtKB/Swiss-Prot),   A0A0A0MQG2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000114841   ⟸   ENSMUST00000124231
Ensembl Acc Id: ENSMUSP00000011877   ⟸   ENSMUST00000011877
Ensembl Acc Id: ENSMUSP00000006629   ⟸   ENSMUST00000006629
Ensembl Acc Id: ENSMUSP00000099902   ⟸   ENSMUST00000102838
Protein Domains
Calponin-homology (CH)   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62261-F1-model_v2 AlphaFold Q62261 1-2363 view protein structure

Promoters
RGD ID:6822210
Promoter ID:MM_KWN:6814
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000011921
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,002,626 - 30,003,727 (-)MPROMDB
RGD ID:6822209
Promoter ID:MM_KWN:6815
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000011919
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,004,446 - 30,006,182 (-)MPROMDB
RGD ID:6822211
Promoter ID:MM_KWN:6816
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   MEF_B6
Transcripts:OTTMUST00000011920
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,010,731 - 30,011,532 (-)MPROMDB
RGD ID:6846910
Promoter ID:MM_ACW:7015
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:SPNB2.KSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,037,144 - 30,037,644 (-)MPROMDB
RGD ID:6822204
Promoter ID:MM_KWN:6817
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000039018,   OTTMUST00000011918
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,097,896 - 30,099,232 (-)MPROMDB
RGD ID:6822205
Promoter ID:MM_KWN:6818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_175836
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361130,119,581 - 30,120,081 (-)MPROMDB
RGD ID:8674186
Promoter ID:EPDNEW_M15124
Type:initiation region
Name:Sptbn1_2
Description:Mus musculus spectrin beta, non-erythrocytic 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15125  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381130,197,927 - 30,197,987EPDNEW
RGD ID:8674188
Promoter ID:EPDNEW_M15125
Type:initiation region
Name:Sptbn1_1
Description:Mus musculus spectrin beta, non-erythrocytic 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15124  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381130,198,246 - 30,198,306EPDNEW
RGD ID:8674190
Promoter ID:EPDNEW_M15126
Type:initiation region
Name:AK137356_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381130,268,144 - 30,268,204EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98388 AgrOrtholog
Ensembl Genes ENSMUSG00000020315 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000006629 ENTREZGENE
  ENSMUST00000006629.14 UniProtKB/Swiss-Prot
  ENSMUST00000011877 ENTREZGENE
  ENSMUST00000011877.13 UniProtKB/Swiss-Prot
  ENSMUST00000102838 ENTREZGENE
  ENSMUST00000102838.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  1.20.58.60 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_9 UniProtKB/Swiss-Prot
  PH_dom-spectrin-type UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot
  Spectrin_bsu UniProtKB/Swiss-Prot
  Spectrin_repeat UniProtKB/Swiss-Prot
KEGG Report mmu:20742 UniProtKB/Swiss-Prot
MGD MGI:98388 ENTREZGENE
NCBI Gene 20742 ENTREZGENE
PANTHER SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/Swiss-Prot
Pfam PF00307 UniProtKB/Swiss-Prot
  PH_9 UniProtKB/Swiss-Prot
  Spectrin UniProtKB/Swiss-Prot
PhenoGen Sptbn1 PhenoGen
PIRSF Spectrin_beta_subunit UniProtKB/Swiss-Prot
PRINTS SPECTRINPH UniProtKB/Swiss-Prot
PROSITE ACTININ_1 UniProtKB/Swiss-Prot
  ACTININ_2 UniProtKB/Swiss-Prot
  PH_DOMAIN UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
SMART SM00033 UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot
  SPEC UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  Spectrin repeat UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
UniProt A0A0A0MQG2 ENTREZGENE, UniProtKB/TrEMBL
  A2AFU1 ENTREZGENE
  P70435_MOUSE UniProtKB/TrEMBL
  Q3TEM7 ENTREZGENE
  Q3TTX2_MOUSE UniProtKB/TrEMBL
  Q3TZN6_MOUSE UniProtKB/TrEMBL
  Q5DTR4_MOUSE UniProtKB/TrEMBL
  Q5SQL8 ENTREZGENE
  Q5SQL9 ENTREZGENE
  Q62261 ENTREZGENE
  Q8BQ35_MOUSE UniProtKB/TrEMBL
  Q8C509_MOUSE UniProtKB/TrEMBL
  Q8R1C2_MOUSE UniProtKB/TrEMBL
  Q9QWJ7 ENTREZGENE
  Q9Z2V0_MOUSE UniProtKB/TrEMBL
  SPTB2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AFU1 UniProtKB/Swiss-Prot
  Q3TEM7 UniProtKB/Swiss-Prot
  Q5SQL8 UniProtKB/Swiss-Prot
  Q5SQL9 UniProtKB/Swiss-Prot
  Q9QWJ7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-25 Sptbn1  spectrin beta, non-erythrocytic 1  Spnb2  spectrin beta 2  Symbol and/or name change 5135510 APPROVED