Vmn1r235 (vomeronasal 1 receptor 235) - Rat Genome Database

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Gene: Vmn1r235 (vomeronasal 1 receptor 235) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r235
Name: vomeronasal 1 receptor 235
RGD ID: 1551374
MGI Page MGI
Description: Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be located in plasma membrane. Orthologous to human VN1R4 (vomeronasal 1 receptor 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1r; V1rf2; vomernasal 1 receptor Vmn1r235; vomeronasal 1 receptor, F2; vomeronasal type 1 receptor F2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391721,480,689 - 21,483,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)EnsemblGRCm39 Ensembl
GRCm381721,260,427 - 21,262,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv371721,397,391 - 21,399,827 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361720,965,124 - 20,967,560 (+)NCBIMGSCv36mm8
Celera1722,298,860 - 22,301,325 (+)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1711.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, etal., Nat Neurosci 2002 Feb;5(2):134-40.
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r235
87 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:104
Interacting mature miRNAs:109
Transcripts:ENSMUST00000060603
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_134199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC170594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF394953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY065513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000060603   ⟹   ENSMUSP00000061689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,480,689 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,260,427 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235270   ⟹   ENSMUSP00000157741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236183   ⟹   ENSMUSP00000157784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236212   ⟹   ENSMUSP00000158083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236821   ⟹   ENSMUSP00000158023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237540   ⟹   ENSMUSP00000157642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237810   ⟹   ENSMUSP00000157418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1721,476,673 - 21,483,143 (+)Ensembl
GRCm38.p6 Ensembl1721,256,411 - 21,262,881 (+)Ensembl
RefSeq Acc Id: NM_134199   ⟹   NP_598960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,480,689 - 21,483,125 (+)NCBI
GRCm381721,260,427 - 21,262,863 (+)ENTREZGENE
MGSCv371721,397,391 - 21,399,827 (+)RGD
Celera1722,298,860 - 22,301,325 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598960 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL47918 (Get FASTA)   NCBI Sequence Viewer  
  AAM69673 (Get FASTA)   NCBI Sequence Viewer  
  AEF00401 (Get FASTA)   NCBI Sequence Viewer  
  AEF00402 (Get FASTA)   NCBI Sequence Viewer  
  AEF00403 (Get FASTA)   NCBI Sequence Viewer  
  AEF00404 (Get FASTA)   NCBI Sequence Viewer  
  AEF00405 (Get FASTA)   NCBI Sequence Viewer  
  AEF00406 (Get FASTA)   NCBI Sequence Viewer  
  AEF00407 (Get FASTA)   NCBI Sequence Viewer  
  AEF00408 (Get FASTA)   NCBI Sequence Viewer  
  AEF00409 (Get FASTA)   NCBI Sequence Viewer  
  AEF00410 (Get FASTA)   NCBI Sequence Viewer  
  AEF00411 (Get FASTA)   NCBI Sequence Viewer  
  AEF00412 (Get FASTA)   NCBI Sequence Viewer  
  AEF00413 (Get FASTA)   NCBI Sequence Viewer  
  AEF00414 (Get FASTA)   NCBI Sequence Viewer  
  AEF00415 (Get FASTA)   NCBI Sequence Viewer  
  AEF00416 (Get FASTA)   NCBI Sequence Viewer  
  AEF00417 (Get FASTA)   NCBI Sequence Viewer  
  AEF00418 (Get FASTA)   NCBI Sequence Viewer  
  AEF00419 (Get FASTA)   NCBI Sequence Viewer  
  AEF00420 (Get FASTA)   NCBI Sequence Viewer  
  AEF00421 (Get FASTA)   NCBI Sequence Viewer  
  AEF00422 (Get FASTA)   NCBI Sequence Viewer  
  AEF00423 (Get FASTA)   NCBI Sequence Viewer  
  AEF00424 (Get FASTA)   NCBI Sequence Viewer  
  AEF00425 (Get FASTA)   NCBI Sequence Viewer  
  AEF00426 (Get FASTA)   NCBI Sequence Viewer  
  AEF00427 (Get FASTA)   NCBI Sequence Viewer  
  AEF00428 (Get FASTA)   NCBI Sequence Viewer  
  EDL38029 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000061689
  ENSMUSP00000061689.4
  ENSMUSP00000157418.2
  ENSMUSP00000157642.2
  ENSMUSP00000157741.2
  ENSMUSP00000157784.2
  ENSMUSP00000158023.2
  ENSMUSP00000158083.2
RefSeq Acc Id: NP_598960   ⟸   NM_134199
- UniProtKB: Q8R297 (UniProtKB/TrEMBL),   F6MBV3 (UniProtKB/TrEMBL),   F6MBW8 (UniProtKB/TrEMBL),   F6MBU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000157418   ⟸   ENSMUST00000237810
RefSeq Acc Id: ENSMUSP00000157642   ⟸   ENSMUST00000237540
RefSeq Acc Id: ENSMUSP00000158023   ⟸   ENSMUST00000236821
RefSeq Acc Id: ENSMUSP00000157784   ⟸   ENSMUST00000236183
RefSeq Acc Id: ENSMUSP00000158083   ⟸   ENSMUST00000236212
RefSeq Acc Id: ENSMUSP00000061689   ⟸   ENSMUST00000060603
RefSeq Acc Id: ENSMUSP00000157741   ⟸   ENSMUST00000235270
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A494B9T5-F1-model_v2 AlphaFold A0A494B9T5 1-349 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159636 AgrOrtholog
Ensembl Genes ENSMUSG00000050102 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060603 ENTREZGENE
  ENSMUST00000060603.5 UniProtKB/TrEMBL
  ENSMUST00000235270.2 UniProtKB/TrEMBL
  ENSMUST00000236183.2 UniProtKB/TrEMBL
  ENSMUST00000236212.2 UniProtKB/TrEMBL
  ENSMUST00000236821.2 UniProtKB/TrEMBL
  ENSMUST00000237540.2 UniProtKB/TrEMBL
  ENSMUST00000237810.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:171233 UniProtKB/TrEMBL
MGD MGI:2159636 ENTREZGENE
NCBI Gene 171233 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r235 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A494B9G6_MOUSE UniProtKB/TrEMBL
  A0A494B9T5_MOUSE UniProtKB/TrEMBL
  F6MBU7 ENTREZGENE
  F6MBV3 ENTREZGENE
  F6MBW8 ENTREZGENE
  Q8K4H9_MOUSE UniProtKB/TrEMBL
  Q8R297 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r235  vomeronasal 1 receptor 235  V1rf2  vomeronasal 1 receptor, F2  Symbol and/or name change 5135510 APPROVED