Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) - Rat Genome Database
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Gene: Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) Mus musculus
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Symbol: Csf2
Name: colony stimulating factor 2 (granulocyte-macrophage)
RGD ID: 1551314
MGI Page MGI
Description: Exhibits cytokine activity. Involved in several processes, including embryonic placenta development; myeloid leukocyte differentiation; and positive regulation of cell population proliferation. Localizes to extracellular space. Is expressed in several structures, including genitourinary system; hemolymphoid system; labyrinthine zone; liver; and lung. Used to study pulmonary alveolar proteinosis. Human ortholog(s) of this gene implicated in acute myeloid leukemia; juvenile myelomonocytic leukemia; neutropenia; pulmonary alveolar proteinosis; and visceral leishmaniasis. Orthologous to human CSF2 (colony stimulating factor 2); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; granulocyte-macrophage colony-stimulating factor signaling pathway; syndecan signaling pathway; INTERACTS WITH 1,4-benzoquinone; 1,4-phenylenediamine; 1-[2-(3,4-dichlorophenyl)ethyl]-4-methylpiperazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: colony-stimulating factor; CSF; Csfg; Csfgm; Gm-CS; Gm-CSf; GMCS; GMCSF; granulocyte-macrophage colony stimulating factor 2; granulocyte-macrophage colony-stimulating factor; MGC151255; MGC151257; MGI-I; MGI-IGM; put. GM-CSF
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,138,096 - 54,140,725 (-)NCBIGRCm39mm39
GRCm381154,247,270 - 54,249,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,247,271 - 54,249,667 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,060,772 - 54,063,401 (-)NCBIGRCm37mm9NCBIm37
MGSCv361154,090,687 - 54,093,065 (-)NCBImm8
Celera1158,835,805 - 58,838,455 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abdominal aortic aneurysm  (ISO)
acute myeloid leukemia  (ISO)
agranulocytosis  (ISO)
amnestic disorder  (ISO)
anemia  (ISO)
aplastic anemia  (ISO)
asthma  (IEP,IMP,ISO)
B-cell lymphoma  (IDA)
Bacteremia  (IDA)
Brain Injuries  (ISO)
Breast Neoplasms  (ISO)
bronchiolitis obliterans  (ISO)
carcinoma  (ISO)
chronic obstructive pulmonary disease  (ISO)
colon adenocarcinoma  (IDA)
Colorectal Neoplasms  (ISO)
congestive heart failure  (ISO)
Cough  (ISO)
COVID-19  (ISO)
disease of cellular proliferation  (IAGP)
Drug-Related Side Effects and Adverse Reactions  (ISO)
eyelid disease  (ISO)
Femoral Fractures  (ISO)
Gastrointestinal Hemorrhage  (ISO)
hepatocellular carcinoma  (IMP)
Hereditary Neoplastic Syndromes  (ISO)
Human Influenza  (IMP,ISO)
Inflammation  (ISO)
interstitial cystitis  (ISO)
juvenile myelomonocytic leukemia  (ISO)
Limb Ischemia  (IEP)
Liver Neoplasms  (ISO)
Lymphoma, AIDS-Related  (ISO)
melanoma  (ISO)
mucositis  (ISO)
multiple myeloma  (ISO)
Muscle Weakness  (ISO)
myocardial infarction  (ISO)
Neoplasm, Residual  (ISO)
neural tube defect  (ISO)
Neurodevelopmental Disorders  (ISO)
neutropenia  (ISO)
non-alcoholic fatty liver disease  (ISO)
non-Hodgkin lymphoma  (ISO)
Pain  (ISO)
Parkinsonism  (ISO)
pneumocystosis  (ISO)
pneumonia  (IDA,ISO)
Pseudomonas Infections  (IDA)
psoriasis  (ISO)
pulmonary alveolar proteinosis  (IEA,ISO)
pulmonary fibrosis  (ISO)
Radiation Injuries  (IEP)
rheumatoid arthritis  (ISO)
sarcoma  (ISO)
schizophrenia  (ISO)
Sepsis  (ISO)
silicosis  (ISO)
Spinal Cord Injuries  (ISO)
systemic primary carnitine deficiency disease  (ISO)
temporal arteritis  (ISO)
thrombocytopenia  (ISO)
Thyroid Neoplasms  (ISO)
Venous Thrombosis  (ISO)
Viral Bronchiolitis  (ISO)
visceral leishmaniasis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(S)-colchicine  (ISO)
(S)-nicotine  (ISO)
1,4-benzoquinone  (EXP)
1,4-phenylenediamine  (EXP)
1-[2-(3,4-dichlorophenyl)ethyl]-4-methylpiperazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-nitropyrene  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-di-tert-butyl-4-methylphenol  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxynon-2-enal  (EXP)
4-nitroquinoline N-oxide  (EXP)
4-nonylphenol  (ISO)
5-fluorouracil  (EXP)
5-oxo-ETE  (ISO)
7,12-dimethyltetraphene  (EXP)
7-ketocholesterol  (ISO)
acetaldehyde  (ISO)
acetylcholine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (EXP,ISO)
aflatoxin B1  (ISO)
albuterol  (ISO)
alclometasone dipropionate  (ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (ISO)
aluminium hydroxide  (ISO)
aluminium oxide  (ISO)
ammonium chloride  (ISO)
amphibole asbestos  (ISO)
ampicillin  (EXP)
andrastin A  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
anthracene-1,8,9-triol  (ISO)
apocynin  (ISO)
aripiprazole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
asbestos  (ISO)
atorvastatin calcium  (ISO)
baicalein  (ISO)
beclomethasone  (ISO)
benzalkonium chloride  (EXP)
benzene  (EXP,ISO)
benzene-1,2,4-triol  (EXP)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
betamethasone valerate  (ISO)
bilirubin IXalpha  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bleomycin A2  (EXP,ISO)
boric acid  (ISO)
brefeldin A  (ISO)
budesonide  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
Calcimycin  (EXP,ISO)
calcitriol  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP,ISO)
carmustine  (ISO)
carvedilol  (ISO)
chenodeoxycholic acid  (EXP)
choline  (EXP)
ciprofloxacin  (EXP)
cisplatin  (EXP)
clobetasol  (EXP)
cobalt atom  (EXP,ISO)
columbamine  (ISO)
cortisol  (EXP,ISO)
crocidolite asbestos  (EXP,ISO)
crotonaldehyde  (ISO)
cyanidin cation  (EXP,ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP)
cytochalasin B  (ISO)
cytochalasin D  (ISO)
D-penicillamine  (ISO)
deoxycholic acid  (EXP)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP,ISO)
dichlorine  (EXP)
dinitrogen  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (EXP)
ethanol  (EXP)
ethyl acetate  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (ISO)
fenofibrate  (ISO)
ferroheme b  (EXP)
flavonoids  (ISO)
fluticasone  (ISO)
formaldehyde  (EXP,ISO)
formoterol fumarate  (ISO)
fulvestrant  (EXP)
gemcitabine  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
graphite  (EXP)
GW 4064  (EXP,ISO)
heme b  (EXP)
histamine  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (EXP,ISO)
IC-87114  (EXP)
indometacin  (ISO)
ionomycin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
iron(2+) sulfate (anhydrous)  (ISO)
isotretinoin  (ISO)
kaempferol  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
lead(2+)  (EXP)
leukotriene B4  (ISO)
leukotriene D4  (ISO)
linuron  (EXP)
lipoarabinomannan  (ISO)
lipopolysaccharide  (EXP,ISO)
lipoteichoic acid  (ISO)
luteolin  (ISO)
LY294002  (EXP)
manganese(II) chloride  (ISO)
mangiferin  (EXP)
mercury dichloride  (EXP)
metam  (EXP)
methanol  (ISO)
metronidazole  (EXP)
microcystin-LR  (EXP)
ML-7  (ISO)
mometasone furoate  (ISO)
monensin A  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
NAD zwitterion  (EXP)
NAD(+)  (EXP)
naproxen  (ISO)
neomycin  (EXP)
nickel atom  (ISO)
nickel dichloride  (EXP,ISO)
nicotine  (ISO)
nitrates  (ISO)
nitric oxide  (EXP,ISO)
nitro blue tetrazolium dichloride  (ISO)
nitrogen dioxide  (ISO)
nocodazole  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
paraquat  (EXP)
pentachlorophenol  (EXP)
pentanal  (ISO)
peptidoglycan  (ISO)
permethrin  (ISO)
phenethyl isothiocyanate  (EXP,ISO)
Phomenone  (EXP)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pimecrolimus  (EXP)
piperine  (ISO)
poly(ethylene)  (ISO)
poly(I:C)  (EXP)
polymyxin B2  (EXP)
pomalidomide  (ISO)
procyanidin B3  (EXP)
propan-2-ol  (EXP)
prostaglandin E2  (EXP,ISO)
Pyridostigmine bromide  (ISO)
quartz  (ISO)
quercetin  (EXP,ISO)
raloxifene  (ISO)
reactive oxygen species  (EXP)
resveratrol  (EXP,ISO)
rutin  (EXP)
Salmeterol xinafoate  (ISO)
SB 203580  (ISO)
scopolamine  (EXP)
serpentine asbestos  (EXP,ISO)
silicon dioxide  (EXP,ISO)
sirolimus  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (EXP,ISO)
spironolactone  (ISO)
staurosporine  (ISO)
sulfasalazine  (ISO)
sulforaphane  (ISO)
sumatriptan  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP,ISO)
tamoxifen  (ISO)
taurocholic acid  (EXP)
temozolomide  (ISO)
thalidomide  (ISO)
theophylline  (ISO)
thymidine  (EXP)
tipifarnib  (ISO)
titanium dioxide  (EXP,ISO)
toluene 2,4-diisocyanate  (ISO)
triamcinolone acetonide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
tubocurarine  (ISO)
tungsten  (ISO)
tyrphostin AG 1478  (ISO)
U-73122  (ISO)
urethane  (EXP,ISO)
usnic acid  (ISO)
vanadyl sulfate  (ISO)
vancomycin  (EXP)
vincristine  (ISO)
wortmannin  (ISO)
zearalenone  (ISO)
zidovudine  (EXP)
zinc atom  (ISO)
zinc dichloride  (EXP,ISO)
zinc oxide  (EXP)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abdominal fat pad morphology  (IAGP)
abnormal alveolar macrophage morphology  (IAGP)
abnormal aorta collagen fibril morphology  (IAGP)
abnormal aorta elastic fiber morphology  (IAGP)
abnormal bone marrow morphology  (IAGP)
abnormal circulating glucose level  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal lipid level  (IAGP)
abnormal lung morphology  (IAGP)
abnormal mesenteric fat pad morphology  (IAGP)
abnormal MHC II cell surface expression on macrophages  (IAGP)
abnormal ovulation  (IAGP)
abnormal pancreatic islet morphology  (IAGP)
abnormal placenta development  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal response to transplant  (IAGP)
abnormal spleen size  (IAGP)
abnormal surfactant secretion  (IAGP)
abnormal uterus morphology  (IAGP)
absent mature ovarian follicles  (IAGP)
absent teeth  (IAGP)
decreased body size  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating progesterone level  (IAGP)
decreased energy expenditure  (IAGP)
decreased fetal size  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased litter size  (IAGP)
decreased ovary weight  (IAGP)
decreased pancreatic beta cell number  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to type IV hypersensitivity reaction  (IAGP)
decreased trophoblast glycogen cell number  (IAGP)
emphysema  (IAGP)
enhanced gluconeogenesis  (IAGP)
extramedullary hematopoiesis  (IAGP)
fetal growth retardation  (IAGP)
glomerulonephritis  (IAGP)
hyperglycemia  (IAGP)
impaired glucose tolerance  (IAGP)
impaired luteinization  (IAGP)
impaired macrophage chemotaxis  (IAGP)
increased abdominal adipose tissue amount  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased B cell derived lymphoma incidence  (IAGP)
increased body weight  (IAGP)
increased carcinoma incidence  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating leptin level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased eosinophil cell number  (IAGP)
increased fat cell size  (IAGP)
increased food intake  (IAGP)
increased gonadal fat pad weight  (IAGP)
increased hemoglobin content  (IAGP)
increased IgE level  (IAGP)
increased IgG1 level  (IAGP)
increased immunoglobulin level  (IAGP)
increased inflammatory response  (IAGP)
increased mesenteric fat pad weight  (IAGP)
increased neutrophil cell number  (IAGP)
increased ovarian carcinoma incidence  (IAGP)
increased pituitary adenoma incidence  (IAGP)
increased spongiotrophoblast size  (IAGP)
increased subcutaneous adipose tissue amount  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to fungal infection  (IAGP)
increased susceptibility to parasitic infection  (IAGP)
increased total body fat amount  (IAGP)
interstitial pneumonia  (IAGP)
lung inflammation  (IAGP)
lymphoid hyperplasia  (IAGP)
maternal effect  (IAGP)
osteopetrosis  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
placental labyrinth hypoplasia  (IAGP)
polycythemia  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
prolonged diestrus  (IAGP)
prolonged estrous cycle  (IAGP)
prolonged metestrus  (IAGP)
pulmonary alveolar proteinosis  (IAGP)
reduced fertility  (IAGP)
References

References - curated
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27. Luo X, etal., PLoS One. 2010 Apr 13;5(4):e10149.
28. MGD data from the GO Consortium
29. MGD IEA
30. Nishihara T, etal., Exp Neurol. 2011 Jun;229(2):507-16. Epub 2011 Apr 16.
31. Orphanos V, etal., Clin Exp Rheumatol. 1998 Nov-Dec;16(6):683-8.
32. Pipeline to import KEGG annotations from KEGG into RGD
33. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
34. Pipeline to import SMPDB annotations from SMPDB into RGD
35. Ray M, etal., Indian J Pediatr. 2000 Jan;67(1):67-8.
36. RGD automated import pipeline
37. RGD automated import pipeline for gene-chemical interactions
38. Saha S, etal., Thorax. 2009 Aug;64(8):671-6. Epub 2009 Feb 12.
39. Sears BW, etal., J Inflamm Res. 2010 Aug 1;2010(3):105-114.
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Additional References at PubMed
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PMID:1649220   PMID:1712888   PMID:1794058   PMID:1828890   PMID:1889803   PMID:2002066   PMID:2419912   PMID:2567264   PMID:2676840   PMID:2678102   PMID:2784591   PMID:2789124  
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PMID:8406478   PMID:8499630   PMID:8537126   PMID:8563750   PMID:8595882   PMID:8595891   PMID:8601605   PMID:8609219   PMID:8632916   PMID:8660977   PMID:8661724   PMID:8662231  
PMID:8662242   PMID:8683100   PMID:8786147   PMID:8808410   PMID:8835527   PMID:8838016   PMID:8838319   PMID:8839836   PMID:8875898   PMID:8881659   PMID:8887313   PMID:8903730  
PMID:8916939   PMID:8934515   PMID:8934574   PMID:8978486   PMID:9060405   PMID:9070927   PMID:9108392   PMID:9149945   PMID:9171094   PMID:9177770   PMID:9180904   PMID:9216734  
PMID:9233638   PMID:9281358   PMID:9292509   PMID:9344502   PMID:9345066   PMID:9356488   PMID:9357844   PMID:9357845   PMID:9376584   PMID:9414288   PMID:9446646   PMID:9514916  
PMID:9697835   PMID:9759887   PMID:9849968   PMID:9850165   PMID:9862334   PMID:9915988   PMID:9973388   PMID:9988767   PMID:10021465   PMID:10349636   PMID:10510082   PMID:10515448  
PMID:10556427   PMID:10652277   PMID:10652327   PMID:10655497   PMID:10678181   PMID:10679099   PMID:10684813   PMID:10704283   PMID:10739950   PMID:10762411   PMID:10835321   PMID:10845903  
PMID:10943842   PMID:11034414   PMID:11042159   PMID:11058444   PMID:11076861   PMID:11119498   PMID:11141486   PMID:11159019   PMID:11159518   PMID:11160260   PMID:11217851   PMID:11259269  
PMID:11280804   PMID:11350793   PMID:11504698   PMID:11581310   PMID:11597913   PMID:11672538   PMID:11748649   PMID:11781067   PMID:11886498   PMID:11895800   PMID:11906755   PMID:11908710  
PMID:11929777   PMID:12021780   PMID:12115609   PMID:12165080   PMID:12169573   PMID:12193691   PMID:12208854   PMID:12218100   PMID:12234685   PMID:12356576   PMID:12393686   PMID:12444140  
PMID:12466851   PMID:12477932   PMID:12598228   PMID:12660834   PMID:12732663   PMID:12759418   PMID:12850812   PMID:12883753   PMID:12890699   PMID:14630812   PMID:14633611   PMID:14684749  
PMID:14970180   PMID:15118851   PMID:15138187   PMID:15259023   PMID:15310555   PMID:15383599   PMID:15621725   PMID:15647505   PMID:15767289   PMID:15781578   PMID:15905543   PMID:16033860  
PMID:16081807   PMID:16141072   PMID:16141073   PMID:16177100   PMID:16239546   PMID:16275889   PMID:16276414   PMID:16393983   PMID:16416089   PMID:16474098   PMID:16710471   PMID:16873730  
PMID:16891399   PMID:16917076   PMID:16925466   PMID:16949316   PMID:17035062   PMID:17069015   PMID:17158354   PMID:17182538   PMID:17322386   PMID:17374157   PMID:17404308   PMID:17449931  
PMID:17475873   PMID:17483299   PMID:17512774   PMID:17557120   PMID:17652450   PMID:17785799   PMID:17848583   PMID:17934321   PMID:18156493   PMID:18178849   PMID:18202111   PMID:18250471  
PMID:18277945   PMID:18354213   PMID:18424709   PMID:18437014   PMID:18456799   PMID:18501559   PMID:18566389   PMID:18578951   PMID:18606643   PMID:18617637   PMID:18641637   PMID:18701168  
PMID:18722015   PMID:18765677   PMID:18775989   PMID:18779348   PMID:18839015   PMID:18945591   PMID:18945906   PMID:18974133   PMID:19030026   PMID:19092943   PMID:19109256   PMID:19124758  
PMID:19151789   PMID:19165346   PMID:19171501   PMID:19174473   PMID:19196868   PMID:19228596   PMID:19230854   PMID:19282460   PMID:19332060   PMID:19426550   PMID:19465690   PMID:19500657  
PMID:19502385   PMID:19535645   PMID:19590023   PMID:19630916   PMID:19641137   PMID:19737804   PMID:19750479   PMID:19752185   PMID:19779039   PMID:19880499   PMID:19890066   PMID:19941314  
PMID:20034963   PMID:20035012   PMID:20159620   PMID:20230223   PMID:20357255   PMID:20421390   PMID:20424288   PMID:20600582   PMID:20639460   PMID:20672970   PMID:20736176   PMID:20804501  
PMID:20829438   PMID:20939024   PMID:20974989   PMID:21029863   PMID:21036914   PMID:21048215   PMID:21052840   PMID:21071440   PMID:21116636   PMID:21148126   PMID:21257824   PMID:21262803  
PMID:21267068   PMID:21377529   PMID:21421852   PMID:21430263   PMID:21439396   PMID:21506110   PMID:21516111   PMID:21516112   PMID:21614016   PMID:21660938   PMID:21664343   PMID:21677750  
PMID:21702922   PMID:21727904   PMID:21734017   PMID:21741972   PMID:21765015   PMID:21765931   PMID:21854582   PMID:21873635   PMID:21900947   PMID:21922246   PMID:21925209   PMID:21930390  
PMID:22003204   PMID:22028332   PMID:22033401   PMID:22035846   PMID:22099723   PMID:22103458   PMID:22129063   PMID:22129623   PMID:22140071   PMID:22160309   PMID:22223820   PMID:22227205  
PMID:22327125   PMID:22341782   PMID:22345669   PMID:22355103   PMID:22387543   PMID:22547697   PMID:22586039   PMID:22682244   PMID:22696442   PMID:22698406   PMID:22698407   PMID:22749353  
PMID:22802353   PMID:22806691   PMID:22837488   PMID:22860011   PMID:22995428   PMID:22996662   PMID:23015755   PMID:23019518   PMID:23079711   PMID:23297132   PMID:23325885   PMID:23443666  
PMID:23453633   PMID:23456828   PMID:23585475   PMID:23660332   PMID:23728776   PMID:23752044   PMID:23933508   PMID:23956422   PMID:23988615   PMID:24043763   PMID:24044676   PMID:24076588  
PMID:24136200   PMID:24183847   PMID:24204704   PMID:24337383   PMID:24350772   PMID:24366884   PMID:24371146   PMID:24392832   PMID:24446489   PMID:24475975   PMID:24488984   PMID:24489100  
PMID:24551140   PMID:24625929   PMID:24633240   PMID:24662605   PMID:24699451   PMID:24699679   PMID:24821911   PMID:24899500   PMID:24943219   PMID:24951817   PMID:25045999   PMID:25143363  
PMID:25148371   PMID:25168419   PMID:25263125   PMID:25339670   PMID:25348165   PMID:25388222   PMID:25412660   PMID:25561180   PMID:25646302   PMID:25653427   PMID:25753270   PMID:25766237  
PMID:25907616   PMID:25923510   PMID:25931125   PMID:25998393   PMID:26019271   PMID:26195802   PMID:26197965   PMID:26220255   PMID:26229149   PMID:26341401   PMID:26511769   PMID:26660726  
PMID:26755822   PMID:26840954   PMID:27193261   PMID:27256565   PMID:27525438   PMID:27581357   PMID:27595596   PMID:27723723   PMID:27731325   PMID:27835886   PMID:27940088   PMID:28007893  
PMID:28039843   PMID:28166197   PMID:28202523   PMID:28232480   PMID:28344320   PMID:28405624   PMID:28426964   PMID:28459367   PMID:28489415   PMID:28534709   PMID:28546511   PMID:28606987  
PMID:28737771   PMID:28777803   PMID:28860566   PMID:28942919   PMID:28978634   PMID:29066547   PMID:29142211   PMID:29222492   PMID:29288202   PMID:29288203   PMID:29351125   PMID:29376889  
PMID:29563337   PMID:29669585   PMID:29925696   PMID:30065264   PMID:30277599   PMID:30415915   PMID:30504915   PMID:30590032   PMID:30664659   PMID:30943070   PMID:30988114   PMID:31079916  
PMID:31132747   PMID:31235766   PMID:31278070   PMID:31375314   PMID:31467912   PMID:31515941   PMID:31880771   PMID:31888216   PMID:31900338   PMID:31919358   PMID:32019828   PMID:32097462  
PMID:32130903   PMID:32350141   PMID:33097708  


Genomics

Comparative Map Data
Csf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,138,096 - 54,140,725 (-)NCBIGRCm39mm39
GRCm381154,247,270 - 54,249,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,247,271 - 54,249,667 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,060,772 - 54,063,401 (-)NCBIGRCm37mm9NCBIm37
MGSCv361154,090,687 - 54,093,065 (-)NCBImm8
Celera1158,835,805 - 58,838,455 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
CSF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5132,073,789 - 132,076,170 (+)EnsemblGRCh38hg38GRCh38
GRCh385132,073,789 - 132,076,170 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375131,409,482 - 131,411,863 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh375131,409,485 - 131,411,863 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365131,437,384 - 131,439,758 (+)NCBINCBI36hg18NCBI36
Build 345131,437,383 - 131,439,758NCBI
Celera5127,539,561 - 127,541,935 (+)NCBI
Cytogenetic Map5q31.1NCBI
HuRef5126,601,846 - 126,604,224 (+)NCBIHuRef
CHM1_15130,842,312 - 130,844,690 (+)NCBICHM1_1
Csf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21038,386,945 - 38,388,926 (-)NCBI
Rnor_6.0 Ensembl1039,602,089 - 39,604,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01039,602,089 - 39,604,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01039,379,120 - 39,381,430 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41039,665,850 - 39,667,831 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11039,679,472 - 39,681,403 (-)NCBI
Celera1037,727,629 - 37,729,611 (-)NCBICelera
Cytogenetic Map10q22NCBI
Csf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554083,451,965 - 3,454,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554083,452,009 - 3,454,255 (+)NCBIChiLan1.0ChiLan1.0
CSF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15133,660,775 - 133,663,146 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5133,660,775 - 133,663,146 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05127,496,951 - 127,499,325 (+)NCBIMhudiblu_PPA_v0panPan3
CSF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1120,344,648 - 20,346,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11120,342,880 - 20,346,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Csf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366473,081,896 - 3,083,864 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2134,354,724 - 134,357,155 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12134,354,724 - 134,357,155 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22139,706,386 - 139,708,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSF2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12334,906,987 - 34,911,252 (+)NCBI
ChlSab1.1 Ensembl2334,908,911 - 34,911,140 (+)Ensembl
Csf2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473340,039,127 - 40,041,294 (-)NCBI

Position Markers
X03020  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,247,225 - 54,247,424UniSTSGRCm38
MGSCv371154,060,727 - 54,060,926UniSTSGRCm37
Celera1158,835,760 - 58,835,959UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead_YAC11 UniSTS
PMC15548P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,247,165 - 54,247,453UniSTSGRCm38
MGSCv371154,060,667 - 54,060,955UniSTSGRCm37
Celera1158,835,700 - 58,835,988UniSTS
Cytogenetic Map11B1.3UniSTS
Csf2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371154,060,909 - 54,061,056UniSTSGRCm37
MGSCv371154,061,951 - 54,063,083UniSTSGRCm37
MGSCv371154,064,103 - 54,064,231UniSTSGRCm37
Celera1158,835,942 - 58,836,089UniSTS
Celera1158,839,157 - 58,839,311UniSTS
Celera1158,836,977 - 58,838,137UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1129.5UniSTS
cM Map1129.5UniSTS
cM Map1129.5UniSTS
Csf2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,250,601 - 54,250,729UniSTSGRCm38
MGSCv371154,064,103 - 54,064,231UniSTSGRCm37
Celera1158,839,157 - 58,839,311UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1129.5UniSTS
Csf2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
cM Map1129.5UniSTS
Csf2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,247,407 - 54,247,554UniSTSGRCm38
MGSCv371154,060,909 - 54,061,056UniSTSGRCm37
Celera1158,835,942 - 58,836,089UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1129.5UniSTS
Csf2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,248,449 - 54,249,581UniSTSGRCm38
MGSCv371154,061,951 - 54,063,083UniSTSGRCm37
Celera1158,836,977 - 58,838,137UniSTS
Cytogenetic Map11B1.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:106
Interacting mature miRNAs:117
Transcripts:ENSMUST00000019060
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000019060   ⟹   ENSMUSP00000019060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1154,247,271 - 54,249,667 (-)Ensembl
RefSeq Acc Id: NM_009969   ⟹   NP_034099
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,138,096 - 54,140,725 (-)NCBI
GRCm381154,247,270 - 54,249,899 (-)ENTREZGENE
MGSCv371154,060,772 - 54,063,401 (-)RGD
Celera1158,835,805 - 58,838,455 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532127   ⟹   XP_006532190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,138,180 - 54,140,021 (-)NCBI
GRCm381154,247,354 - 54,249,307 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034099   ⟸   NM_009969
- Peptide Label: precursor
- UniProtKB: P01587 (UniProtKB/Swiss-Prot),   Q5SX78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532190   ⟸   XM_006532127
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000019060   ⟸   ENSMUST00000019060

Promoters
RGD ID:6850142
Promoter ID:EP11138
Type:single initiation site
Name:MM_CSF2
Description:Granulocyte/Macrophage colony stimulating factor, CSF2or CSFGM gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 49; Mammalian GM-CSF
Experiment Methods:Nuclease protection with homologous sequence ladder; Sequencing of a full-length cDNA; Primer extension
Regulation:T (repressed by or weakly expressed in) lymphocytes; (induced by or strongly expressed in) antigen
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371154,063,146 - 54,063,206EPD
MGSCv361154,063,146 - 54,063,206EPD
RGD ID:8674646
Promoter ID:EPDNEW_M15354
Type:single initiation site
Name:Csf2_1
Description:Mus musculus colony stimulating factor 2 (granulocyte-macrophage), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15355  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,249,642 - 54,249,702EPDNEW
RGD ID:8674698
Promoter ID:EPDNEW_M15355
Type:single initiation site
Name:Csf2_2
Description:Mus musculus colony stimulating factor 2 (granulocyte-macrophage), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15354  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,249,898 - 54,249,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1339752 AgrOrtholog
Ensembl Genes ENSMUSG00000018916 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000019060 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000019060 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GM_colony-stim-fac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12981 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1339752 ENTREZGENE
NCBI Gene 12981 ENTREZGENE
PANTHER PTHR10059 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GM_CSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csf2 PhenoGen
PRINTS GMCSFACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GM_CSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CSF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CSF2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q14AD9_MOUSE UniProtKB/TrEMBL
  Q5SX78 ENTREZGENE, UniProtKB/TrEMBL