Gopc (golgi associated PDZ and coiled-coil motif containing) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gopc (golgi associated PDZ and coiled-coil motif containing) Mus musculus
Analyze
Symbol: Gopc
Name: golgi associated PDZ and coiled-coil motif containing
RGD ID: 1551284
MGI Page MGI
Description: Enables GTPase regulator activity; frizzled binding activity; and protein homodimerization activity. Acts upstream of or within spermatid nucleus differentiation. Located in Golgi apparatus; plasma membrane; and synapse. Is expressed in genitourinary system and tongue. Used to study azoospermia. Orthologous to human GOPC (golgi associated PDZ and coiled-coil motif containing).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210402P09Rik; AI844555; CAL; CFTR-associated ligand; FIG; Golgi-associated PDZ and coiled-coil motif-containing protein; GOP; GOPC1; PDZ domain-containing protein PIST; PDZ protein interacting specifically with TC10; PIST
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391052,213,120 - 52,258,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1052,211,946 - 52,258,220 (-)EnsemblGRCm39 Ensembl
GRCm381052,337,024 - 52,382,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1052,335,850 - 52,382,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv371052,056,887 - 52,101,881 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361052,025,496 - 52,070,490 (-)NCBIMGSCv36mm8
Celera1053,174,463 - 53,219,811 (-)NCBICelera
Cytogenetic Map10B3NCBI
cM Map1026.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11162552   PMID:11384996   PMID:11520064   PMID:12149515   PMID:12372286   PMID:12471024   PMID:12477932   PMID:12885772  
PMID:14610273   PMID:15136571   PMID:15317815   PMID:15329396   PMID:15489334   PMID:15700542   PMID:15700543   PMID:15893389   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16765935  
PMID:17360959   PMID:18287559   PMID:18288386   PMID:18407958   PMID:18468998   PMID:20958966   PMID:21677750   PMID:21873635   PMID:22949614   PMID:24194600   PMID:24523912   PMID:25614626  
PMID:28339613   PMID:30550785   PMID:30786176   PMID:32325033   PMID:32554809   PMID:33359402   PMID:34383253   PMID:34870349   PMID:36417873   PMID:38187761  


Genomics

Comparative Map Data
Gopc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391052,213,120 - 52,258,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1052,211,946 - 52,258,220 (-)EnsemblGRCm39 Ensembl
GRCm381052,337,024 - 52,382,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1052,335,850 - 52,382,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv371052,056,887 - 52,101,881 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361052,025,496 - 52,070,490 (-)NCBIMGSCv36mm8
Celera1053,174,463 - 53,219,811 (-)NCBICelera
Cytogenetic Map10B3NCBI
cM Map1026.54NCBI
GOPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386117,560,269 - 117,602,511 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6117,560,269 - 117,602,542 (-)EnsemblGRCh38hg38GRCh38
GRCh376117,881,432 - 117,923,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366117,988,125 - 118,030,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 346117,991,109 - 118,030,220NCBI
Celera6118,624,329 - 118,666,606 (-)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6115,462,063 - 115,504,349 (-)NCBIHuRef
CHM1_16118,145,375 - 118,187,647 (-)NCBICHM1_1
T2T-CHM13v2.06118,744,505 - 118,786,752 (-)NCBIT2T-CHM13v2.0
Gopc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82032,270,314 - 32,319,635 (-)NCBIGRCr8
mRatBN7.22031,727,617 - 31,776,904 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2031,727,620 - 31,776,903 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2032,726,053 - 32,781,732 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02032,116,963 - 32,172,643 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02032,853,588 - 32,902,883 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02033,471,355 - 33,521,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2033,471,351 - 33,521,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02035,250,254 - 35,299,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,055,284 - 31,105,701 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12031,071,736 - 31,119,338 (-)NCBI
Celera2033,125,468 - 33,174,815 (-)NCBICelera
Cytogenetic Map20q11NCBI
Gopc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955436742,305 - 777,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955436743,616 - 777,878 (-)NCBIChiLan1.0ChiLan1.0
GOPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25137,574,230 - 137,619,713 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16135,467,252 - 135,512,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06115,368,682 - 115,411,140 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16119,509,936 - 119,552,010 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensemblpanpan1.1panPan2
GOPC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,790,118 - 57,829,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl157,792,647 - 57,828,820 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,589,110 - 58,629,156 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,970,112 - 58,010,164 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,970,099 - 58,011,073 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,871,500 - 57,911,541 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,712,463 - 57,752,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,343,632 - 58,383,890 (-)NCBIUU_Cfam_GSD_1.0
Gopc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946108,509,927 - 108,548,999 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936658614,476 - 655,905 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl144,239,383 - 44,287,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1144,239,364 - 44,285,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2149,584,131 - 49,631,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11356,229,780 - 56,270,829 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1356,229,810 - 56,272,830 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604028,567,387 - 28,608,428 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gopc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479812,188,635 - 12,218,305 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479812,188,460 - 12,216,542 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gopc
1761 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1878
Count of miRNA genes:516
Interacting mature miRNAs:628
Transcripts:ENSMUST00000020008, ENSMUST00000105475
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
21079434Bdym5_mbody mass QTL 5 (mouse)104054599654836096Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104557609669135830Mouse
14697707Stsl2_mSalmonella typhimurium susceptibility locus 2 (mouse)104627609653876096Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104627609669235830Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104797449970112651Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse

Markers in Region
GDB:452619  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38153,217,284 - 3,217,438UniSTSGRCm38
GRCm381052,341,166 - 52,341,320UniSTSGRCm38
MGSCv371052,060,972 - 52,061,126UniSTSGRCm37
MGSCv37153,167,284 - 3,167,438UniSTSGRCm37
Celera153,082,688 - 3,082,842UniSTS
Celera1053,178,549 - 53,178,703UniSTS
Cytogenetic Map11A1-A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map10B3UniSTS
AI844555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381052,338,449 - 52,338,533UniSTSGRCm38
MGSCv371052,058,255 - 52,058,339UniSTSGRCm37
Celera1053,175,831 - 53,175,915UniSTS
Cytogenetic Map10B3UniSTS
Whitehead/MRC_RH10458.55UniSTS
Ewsh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381052,342,585 - 52,343,659UniSTSGRCm38
MGSCv371052,062,391 - 52,063,465UniSTSGRCm37
Celera1053,179,968 - 53,181,042UniSTS
Cytogenetic Map10B3UniSTS
Cytogenetic Map11A1-A3UniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB052838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF287893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY016379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF755307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ174667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020008   ⟹   ENSMUSP00000020008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,213,148 - 52,258,171 (-)Ensembl
GRCm38.p6 Ensembl1052,337,052 - 52,382,075 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105475   ⟹   ENSMUSP00000101115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,213,120 - 52,258,220 (-)Ensembl
GRCm38.p6 Ensembl1052,337,024 - 52,382,124 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,224,620 - 52,258,215 (-)Ensembl
GRCm38.p6 Ensembl1052,348,524 - 52,382,119 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217753   ⟹   ENSMUSP00000151773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,213,156 - 52,257,814 (-)Ensembl
GRCm38.p6 Ensembl1052,337,060 - 52,381,718 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217995   ⟹   ENSMUSP00000151595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,211,946 - 52,225,224 (-)Ensembl
GRCm38.p6 Ensembl1052,335,850 - 52,349,128 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1052,224,141 - 52,226,496 (-)Ensembl
GRCm38.p6 Ensembl1052,348,045 - 52,350,400 (-)Ensembl
RefSeq Acc Id: NM_001199272   ⟹   NP_001186201
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391052,213,120 - 52,258,220 (-)NCBI
GRCm381052,337,024 - 52,382,124 (-)ENTREZGENE
Celera1053,174,406 - 53,219,860 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_053187   ⟹   NP_444417
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391052,213,120 - 52,258,220 (-)NCBI
GRCm381052,337,024 - 52,382,124 (-)ENTREZGENE
MGSCv371052,056,887 - 52,101,881 (-)RGD
Celera1053,174,406 - 53,219,860 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_444417   ⟸   NM_053187
- Peptide Label: isoform b
- UniProtKB: K3W4Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186201   ⟸   NM_001199272
- Peptide Label: isoform a
- UniProtKB: Q920R1 (UniProtKB/Swiss-Prot),   Q8BSV4 (UniProtKB/Swiss-Prot),   Q9ET11 (UniProtKB/Swiss-Prot),   Q8BH60 (UniProtKB/Swiss-Prot),   K3W4Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101115   ⟸   ENSMUST00000105475
RefSeq Acc Id: ENSMUSP00000151773   ⟸   ENSMUST00000217753
RefSeq Acc Id: ENSMUSP00000151595   ⟸   ENSMUST00000217995
RefSeq Acc Id: ENSMUSP00000020008   ⟸   ENSMUST00000020008
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BH60-F1-model_v2 AlphaFold Q8BH60 1-463 view protein structure

Promoters
RGD ID:6819395
Promoter ID:MM_KWN:4123
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_053187,   UC007FBG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361052,101,731 - 52,102,487 (-)MPROMDB
RGD ID:8671964
Promoter ID:EPDNEW_M14013
Type:initiation region
Name:Gopc_1
Description:Mus musculus golgi associated PDZ and coiled-coil motif containing, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381052,382,122 - 52,382,182EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2149946 AgrOrtholog
Ensembl Genes ENSMUSG00000019861 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020008 ENTREZGENE
  ENSMUST00000020008.10 UniProtKB/Swiss-Prot
  ENSMUST00000105475.9 UniProtKB/TrEMBL
  ENSMUST00000217753 ENTREZGENE
  ENSMUST00000217753.2 UniProtKB/TrEMBL
  ENSMUST00000217995.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GOPC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:94221 UniProtKB/Swiss-Prot
MGD MGI:2149946 ENTREZGENE
NCBI Gene 94221 ENTREZGENE
PANTHER GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gopc PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P7A5_MOUSE UniProtKB/TrEMBL
  A0A1W2P7V0_MOUSE UniProtKB/TrEMBL
  GOPC_MOUSE UniProtKB/Swiss-Prot
  K3W4Q9 ENTREZGENE, UniProtKB/TrEMBL
  Q3TAF1_MOUSE UniProtKB/TrEMBL
  Q8BH60 ENTREZGENE
  Q8BSV4 ENTREZGENE
  Q8R025_MOUSE UniProtKB/TrEMBL
  Q920R1 ENTREZGENE
  Q9ET11 ENTREZGENE
UniProt Secondary Q8BSV4 UniProtKB/Swiss-Prot
  Q920R1 UniProtKB/Swiss-Prot
  Q9ET11 UniProtKB/Swiss-Prot