Sostdc1 (sclerostin domain containing 1) - Rat Genome Database

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Gene: Sostdc1 (sclerostin domain containing 1) Mus musculus
Analyze
Symbol: Sostdc1
Name: sclerostin domain containing 1
RGD ID: 1551201
MGI Page MGI
Description: Predicted to enable BMP binding activity and BMP receptor activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; negative regulation of signal transduction; and odontogenesis of dentin-containing tooth. Located in extracellular space. Is expressed in several structures, including alimentary system; genitourinary system; limb; nervous system; and sensory organ. Orthologous to human SOSTDC1 (sclerostin domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610006G05Rik; cystine-knot containing secreted protein; ecto; ectodermal BMP inhibitor; ectodin; S; sclerostin domain-containing protein 1; sclerostin-like protein; Sostl; USAG; USAG-1; uterine sensitization-associated gene 1 protein; uterine sensitization-associated protein 1; Wi; Wise
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,364,168 - 36,368,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,364,138 - 36,368,451 (+)EnsemblGRCm39 Ensembl
GRCm381236,314,169 - 36,318,452 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,314,139 - 36,318,452 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,040,756 - 37,045,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361236,824,492 - 36,828,711 (+)NCBIMGSCv36mm8
Celera1237,763,054 - 37,767,254 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,7-dihydropurine-6-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-tert-Octylphenol  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
capsaicin  (ISO)
carbon monoxide  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
ciguatoxin CTX1B  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (ISO)
diiodine  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
flusilazole  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP,ISO)
glycidol  (ISO)
glycine betaine  (ISO)
lead diacetate  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercaptopurine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nitrofen  (ISO)
p-tert-Amylphenol  (ISO)
PCB138  (EXP)
pirinixic acid  (EXP,ISO)
purine-6-thiol  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
sulfur dioxide  (EXP)
tamoxifen  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal enamel knot morphology  (IAGP)
abnormal hard palate morphology  (IEA)
abnormal molar crown morphology  (IAGP)
abnormal molar cusp morphology  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal palatal rugae morphology  (IAGP)
abnormal palate morphology  (IEA)
abnormal tooth morphology  (IAGP)
abnormal trigeminal ganglion morphology  (IAGP)
albuminuria  (IAGP)
decreased chondrocyte proliferation  (IAGP)
decreased cranium height  (IEA)
decreased cranium width  (IEA)
decreased osteoclast cell number  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased renal tubule apoptosis  (IAGP)
decreased susceptibility to xenobiotic induced morbidity/mortality  (IAGP)
decreased systemic arterial systolic blood pressure  (IAGP)
extended life span  (IAGP)
fused molars  (IAGP)
glomerulonephritis  (IAGP)
glomerulosclerosis  (IAGP)
increased blood urea nitrogen level  (IAGP)
increased bone mass  (IAGP)
increased bone mineral content  (IAGP)
increased bone mineral density  (IAGP)
increased circulating creatinine level  (IAGP)
increased osteoblast cell number  (IAGP)
increased osteoblast proliferation  (IAGP)
increased trabecular bone volume  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
persistence of hyaloid vascular system  (IEA)
preweaning lethality, incomplete penetrance  (IAGP)
renal cast  (IAGP)
renal interstitial fibrosis  (IAGP)
renal tubule atrophy  (IAGP)
short mandible  (IEA)
supernumerary incisors  (IEA)
supernumerary molars  (IAGP)
supernumerary teeth  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Secreted and transmembrane wnt inhibitors and activators. Cruciat CM and Niehrs C, Cold Spring Harb Perspect Biol. 2013 Mar 1;5(3):a015081. doi: 10.1101/cshperspect.a015081.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12412008   PMID:12477932   PMID:12617826   PMID:14623234   PMID:15020244   PMID:15489334   PMID:15533830   PMID:15880404  
PMID:15944188   PMID:16141072   PMID:16141073   PMID:16179481   PMID:16341262   PMID:16602821   PMID:16738056   PMID:16844427   PMID:16890158   PMID:17002572   PMID:17121988   PMID:17239249  
PMID:17389776   PMID:17555714   PMID:17943079   PMID:18022614   PMID:18256193   PMID:18287559   PMID:18297134   PMID:18329379   PMID:18351662   PMID:18483623   PMID:18538759   PMID:19116665  
PMID:19141669   PMID:19700620   PMID:19782673   PMID:19906978   PMID:20197625   PMID:20510229   PMID:20724449   PMID:21150899   PMID:21267068   PMID:21447550   PMID:21677750   PMID:21806977  
PMID:21873635   PMID:22008794   PMID:22038040   PMID:22496664   PMID:22509524   PMID:22525429   PMID:22829579   PMID:22833125   PMID:23153495   PMID:23293290   PMID:23431057   PMID:23441037  
PMID:23555292   PMID:23994639   PMID:24194600   PMID:24789067   PMID:24816837   PMID:24952961   PMID:25053429   PMID:25185516   PMID:25376721   PMID:25422376   PMID:25664690   PMID:26234751  
PMID:26410627   PMID:26450968   PMID:26903501   PMID:26926045   PMID:27102547   PMID:27178071   PMID:27292642   PMID:27518316   PMID:27626380   PMID:28489004   PMID:28506989   PMID:28692808  
PMID:29437780   PMID:29686684   PMID:30235284   PMID:30325689   PMID:30509557   PMID:30570432   PMID:30776499   PMID:30814306   PMID:30916783   PMID:30932813   PMID:31597102   PMID:32145039  
PMID:32179912   PMID:32286221   PMID:32664967   PMID:32820125   PMID:32857879   PMID:33192541   PMID:33304758   PMID:33579703   PMID:34032268   PMID:34108685   PMID:34155146   PMID:34211084  
PMID:34796774   PMID:35114852   PMID:35333176   PMID:36891756   PMID:37318953  


Genomics

Comparative Map Data
Sostdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,364,168 - 36,368,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,364,138 - 36,368,451 (+)EnsemblGRCm39 Ensembl
GRCm381236,314,169 - 36,318,452 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,314,139 - 36,318,452 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,040,756 - 37,045,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361236,824,492 - 36,828,711 (+)NCBIMGSCv36mm8
Celera1237,763,054 - 37,767,254 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.82NCBI
SOSTDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,461,481 - 16,465,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,461,481 - 16,530,580 (-)EnsemblGRCh38hg38GRCh38
GRCh37716,501,106 - 16,505,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,467,631 - 16,471,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 34716,274,347 - 16,278,714NCBI
Celera716,480,854 - 16,485,222 (-)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef716,387,637 - 16,392,005 (-)NCBIHuRef
CHM1_1716,500,852 - 16,505,220 (-)NCBICHM1_1
T2T-CHM13v2.0716,591,217 - 16,595,471 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,554,239 - 16,558,607 (-)NCBI
Sostdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,778,623 - 58,782,797 (+)NCBIGRCr8
mRatBN7.2653,051,336 - 53,055,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl653,051,354 - 53,055,579 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx653,344,009 - 53,348,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,658,884 - 53,663,061 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0653,129,317 - 53,133,490 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,812,820 - 55,816,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,812,747 - 55,817,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0665,423,740 - 65,427,914 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4655,066,277 - 55,070,451 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1655,069,402 - 55,073,577 (+)NCBI
Celera652,193,795 - 52,197,969 (+)NCBICelera
Cytogenetic Map6q16NCBI
Sostdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,657,029 - 19,662,131 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,657,805 - 19,662,121 (-)NCBIChiLan1.0ChiLan1.0
SOSTDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2621,295,189 - 21,408,065 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1769,619,912 - 69,732,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0717,193,531 - 17,229,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1716,443,703 - 16,448,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,443,703 - 16,448,076 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl716,443,703 - 16,448,076 (-)NCBIpanpan1.1panPan2
SOSTDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11431,035,759 - 31,079,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,022,766 - 31,026,737 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,022,766 - 31,026,737 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1430,543,856 - 30,600,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01430,942,576 - 30,998,969 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1430,942,759 - 30,947,128 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11431,045,159 - 31,101,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01430,757,610 - 30,813,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01431,070,106 - 31,126,811 (-)NCBIUU_Cfam_GSD_1.0
Sostdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511875,301,027 - 75,305,460 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365462,975,606 - 2,980,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365462,976,045 - 2,980,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOSTDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,743,341 - 85,747,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,743,332 - 85,747,893 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,581,754 - 94,585,919 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOSTDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,645,884 - 41,651,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2141,647,079 - 41,652,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604262,859,358 - 62,864,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sostdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473913,766,815 - 13,772,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473913,767,523 - 13,771,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sostdc1
124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:256
Interacting mature miRNAs:294
Transcripts:ENSMUST00000041407
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
14696690Rfq1_mrearing frequency QTL 1, males (mouse)123604999937049999Mouse

Markers in Region
Sostdc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381236,317,488 - 36,318,392UniSTSGRCm38
MGSCv371237,043,915 - 37,044,030UniSTSGRCm37
MGSCv371237,043,748 - 37,043,945UniSTSGRCm37
Celera1237,766,290 - 37,767,194UniSTS
Cytogenetic Map12B2UniSTS
Sostl  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12B2UniSTS
cM Map12 UniSTS
Sostdc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381236,317,328 - 36,317,443UniSTSGRCm38
MGSCv371237,043,915 - 37,044,030UniSTSGRCm37
Cytogenetic Map12B2UniSTS
Sostdc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381236,317,161 - 36,317,358UniSTSGRCm38
MGSCv371237,043,748 - 37,043,945UniSTSGRCm37
Cytogenetic Map12B2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000041407   ⟹   ENSMUSP00000040230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1236,364,138 - 36,368,451 (+)Ensembl
GRCm38.p6 Ensembl1236,314,139 - 36,318,452 (+)Ensembl
RefSeq Acc Id: NM_025312   ⟹   NP_079588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391236,364,168 - 36,368,451 (+)NCBI
GRCm381236,314,169 - 36,318,452 (+)ENTREZGENE
MGSCv371237,040,756 - 37,045,039 (+)RGD
Celera1237,763,054 - 37,767,254 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_079588   ⟸   NM_025312
- Peptide Label: precursor
- UniProtKB: Q8CF09 (UniProtKB/Swiss-Prot),   Q9CQN4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000040230   ⟸   ENSMUST00000041407
Protein Domains
CTCK

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQN4-F1-model_v2 AlphaFold Q9CQN4 1-206 view protein structure

Promoters
RGD ID:8678162
Promoter ID:EPDNEW_M17112
Type:single initiation site
Name:Sostdc1_1
Description:Mus musculus sclerostin domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381236,314,226 - 36,314,286EPDNEW
RGD ID:6823438
Promoter ID:MM_KWN:11521
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_025312
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361237,040,656 - 37,041,156 (+)MPROMDB
RGD ID:6847013
Promoter ID:MM_ACW:10439
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:SOSTDC1.BSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361237,043,706 - 37,044,206 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913292 AgrOrtholog
Ensembl Genes ENSMUSG00000036169 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041407 ENTREZGENE
  ENSMUST00000041407.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
InterPro Cys_knot_C UniProtKB/Swiss-Prot
  Cystine-knot_cytokine UniProtKB/Swiss-Prot
  Sclerostin/SOSTDC1 UniProtKB/Swiss-Prot
KEGG Report mmu:66042 UniProtKB/Swiss-Prot
MGD MGI:1913292 ENTREZGENE
NCBI Gene 66042 ENTREZGENE
PANTHER PTHR14903 UniProtKB/Swiss-Prot
  SCLEROSTIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam Sclerostin UniProtKB/Swiss-Prot
PhenoGen Sostdc1 PhenoGen
PROSITE CTCK_2 UniProtKB/Swiss-Prot
UniProt Q8CF09 ENTREZGENE
  Q9CQN4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CF09 UniProtKB/Swiss-Prot