Dus4l (dihydrouridine synthase 4 like) - Rat Genome Database

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Gene: Dus4l (dihydrouridine synthase 4 like) Mus musculus
Analyze
Symbol: Dus4l
Name: dihydrouridine synthase 4 like (Ensembl:dihydrouridine synthase 4-like (S. cerevisiae))
RGD ID: 1550991
MGI Page MGI
Description: Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Orthologous to human DUS4L (dihydrouridine synthase 4 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310069P03Rik; 2700089B10Rik; AI482040; dihydrouridine synthase 4-like (S. cerevisiae); MGC130363; Pp35; tRNA-dihydrouridine synthase 4-like; tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,690,049 - 31,704,834 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,690,049 - 31,704,825 (-)EnsemblGRCm39 Ensembl
GRCm381231,640,050 - 31,654,866 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,640,050 - 31,654,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,324,920 - 32,339,691 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,225,302 - 32,240,073 (-)NCBIMGSCv36mm8
Celera1233,089,785 - 33,104,549 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635  


Genomics

Comparative Map Data
Dus4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,690,049 - 31,704,834 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,690,049 - 31,704,825 (-)EnsemblGRCm39 Ensembl
GRCm381231,640,050 - 31,654,866 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,640,050 - 31,654,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,324,920 - 32,339,691 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,225,302 - 32,240,073 (-)NCBIMGSCv36mm8
Celera1233,089,785 - 33,104,549 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.68NCBI
DUS4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,563,971 - 107,578,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,563,484 - 107,578,523 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,204,416 - 107,218,968 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367106,991,668 - 107,006,204 (+)NCBINCBI36Build 36hg18NCBI36
Celera7102,009,704 - 102,024,239 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,565,027 - 101,579,590 (+)NCBIHuRef
CHM1_17107,138,353 - 107,152,919 (+)NCBICHM1_1
T2T-CHM13v2.07108,880,017 - 108,894,566 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,565,491 - 106,580,056 (+)NCBI
Dus4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,955,609 - 53,970,050 (-)NCBIGRCr8
mRatBN7.2648,228,111 - 48,242,553 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,228,111 - 48,242,449 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,535,417 - 48,549,863 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,850,336 - 48,864,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,290,505 - 48,305,066 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,925,987 - 50,943,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,928,397 - 50,943,488 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,601,164 - 59,615,497 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,509,843 - 49,524,168 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,513,642 - 49,527,787 (-)NCBI
Celera647,430,268 - 47,444,594 (-)NCBICelera
Cytogenetic Map6q16NCBI
Dus4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,919,625 - 11,932,393 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541011,919,710 - 11,931,593 (+)NCBIChiLan1.0ChiLan1.0
DUS4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,407,043 - 144,421,486 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,677,080 - 192,691,557 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,542,894 - 99,557,478 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,266,481 - 112,280,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,266,481 - 112,280,968 (+)Ensemblpanpan1.1panPan2
DUS4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11813,023,755 - 13,040,180 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1813,023,744 - 13,039,817 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,667,551 - 12,684,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,294,967 - 13,311,458 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,294,969 - 13,311,445 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,111,362 - 13,127,846 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01813,031,526 - 13,048,011 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,308,999 - 13,325,491 (-)NCBIUU_Cfam_GSD_1.0
DUS4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,273,736 - 107,289,670 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,273,571 - 107,291,494 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,033,713 - 118,044,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DUS4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,485,276 - 76,498,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,485,098 - 76,499,649 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,365,146 - 27,378,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dus4l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,173,124 - 22,188,396 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,173,117 - 22,188,436 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dus4l
414 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:176
Interacting mature miRNAs:192
Transcripts:ENSMUST00000020977
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse

Markers in Region
UniSTS:236824  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,640,100 - 31,640,348UniSTSGRCm38
MGSCv371232,324,965 - 32,325,213UniSTSGRCm37
Celera1233,089,830 - 33,090,078UniSTS
Cytogenetic Map12A3UniSTS
UniSTS:236825  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,654,396 - 31,654,701UniSTSGRCm38
MGSCv371232,339,261 - 32,339,566UniSTSGRCm37
Celera1233,104,119 - 33,104,424UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map12A3UniSTS
AI482040  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,640,170 - 31,640,256UniSTSGRCm38
MGSCv371232,325,035 - 32,325,121UniSTSGRCm37
Celera1233,089,900 - 33,089,986UniSTS
Cytogenetic Map12A3UniSTS
Whitehead/MRC_RH12301.43UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000020977   ⟹   ENSMUSP00000020977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,690,049 - 31,704,825 (-)Ensembl
GRCm38.p6 Ensembl1231,640,050 - 31,654,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,696,618 - 31,704,805 (-)Ensembl
GRCm38.p6 Ensembl1231,646,619 - 31,654,806 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,704,480 - 31,704,775 (-)Ensembl
GRCm38.p6 Ensembl1231,654,481 - 31,654,776 (-)Ensembl
RefSeq Acc Id: NM_001418028   ⟹   NP_001404957
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NM_028002   ⟹   NP_082278
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
GRCm381231,640,055 - 31,654,826 (-)NCBI
MGSCv371232,324,920 - 32,339,691 (-)RGD
Celera1233,089,785 - 33,104,549 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184675
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NR_184676
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NR_184677
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NR_184678
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NR_184679
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,690,049 - 31,704,834 (-)NCBI
RefSeq Acc Id: NP_082278   ⟸   NM_028002
- Peptide Label: isoform 1
- UniProtKB: Q9D6P4 (UniProtKB/Swiss-Prot),   Q32M08 (UniProtKB/Swiss-Prot),   A0A0R4J016 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020977   ⟸   ENSMUST00000020977
RefSeq Acc Id: NP_001404957   ⟸   NM_001418028
- Peptide Label: isoform 2
Protein Domains
DUS-like FMN-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32M08-F1-model_v2 AlphaFold Q32M08 1-324 view protein structure

Promoters
RGD ID:8678094
Promoter ID:EPDNEW_M17078
Type:initiation region
Name:Dus4l_1
Description:Mus musculus dihydrouridine synthase 4-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381231,654,778 - 31,654,838EPDNEW
RGD ID:6822822
Promoter ID:MM_KWN:11444
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001163126,   NM_028002
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361232,339,424 - 32,339,924 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919166 AgrOrtholog
Ensembl Genes ENSMUSG00000020648 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020977 ENTREZGENE
  ENSMUST00000020977.4 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUS-like_FMN-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_hU_synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_hU_synthase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71916 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919166 ENTREZGENE
NCBI Gene 71916 ENTREZGENE
PANTHER TRNA-DIHYDROURIDINE SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA-DIHYDROURIDINE(20A/20B) SYNTHASE [NAD(P)+]-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Dus UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dus4l PhenoGen
PIRSF Dus UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UPF0034 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP FMN-linked oxidoreductases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J016 ENTREZGENE, UniProtKB/TrEMBL
  DUS4L_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D6P4 ENTREZGENE
UniProt Secondary Q9D6P4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Dus4l  dihydrouridine synthase 4 like  Dus4l  dihydrouridine synthase 4-like (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED