Pank4 (pantothenate kinase 4) - Rat Genome Database

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Gene: Pank4 (pantothenate kinase 4) Mus musculus
Analyze
Symbol: Pank4
Name: pantothenate kinase 4
RGD ID: 1550985
MGI Page MGI
Description: Predicted to enable pantothenate kinase activity and phosphatase activity. Predicted to be involved in coenzyme A biosynthetic process and coenzyme A catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol; extracellular space; and nucleus. Is expressed in several structures, including alimentary system; ear; genitourinary system; nervous system; and respiratory system. Used to study cataract. Human ortholog(s) of this gene implicated in cataract. Orthologous to human PANK4 (pantothenate kinase 4 (inactive)); PARTICIPATES IN pantothenic acid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; chrysene.
Type: protein-coding
Previously known as: 4'-phosphopantetheine phosphatase; D030031I12Rik; Gm42363; inactive pantothenic acid kinase 4; mPanK4; pantothenic acid kinase 4; predicted gene, 42363; R75150
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,048,580 - 155,065,395 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,048,580 - 155,065,395 (+)EnsemblGRCm39 Ensembl
GRCm384154,964,123 - 154,980,940 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,964,123 - 154,980,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,338,242 - 154,355,047 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,807,933 - 153,824,673 (+)NCBIMGSCv36mm8
Celera4157,236,178 - 157,253,016 (+)NCBICelera
Cytogenetic Map4E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)
extracellular space  (ISO)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Positional cloning of the mouse saccharin preference (Sac) locus. Bachmanov AA, etal., Chem Senses 2001 Sep;26(7):925-33.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
8. A novel pantothenate kinase gene (PANK2) is defective in Hallervorden-Spatz syndrome. Zhou B, etal., Nat Genet 2001 Aug;28(4):345-9.

Genomics

Comparative Map Data
Pank4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,048,580 - 155,065,395 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,048,580 - 155,065,395 (+)EnsemblGRCm39 Ensembl
GRCm384154,964,123 - 154,980,940 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,964,123 - 154,980,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,338,242 - 154,355,047 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,807,933 - 153,824,673 (+)NCBIMGSCv36mm8
Celera4157,236,178 - 157,253,016 (+)NCBICelera
Cytogenetic Map4E2NCBI
PANK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,508,537 - 2,526,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12,508,537 - 2,526,597 (-)EnsemblGRCh38hg38GRCh38
GRCh3712,439,976 - 2,458,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612,429,835 - 2,447,895 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412,472,136 - 2,490,197NCBI
Celera1127,937 - 146,325 (+)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef11,718,423 - 1,731,652 (-)NCBIHuRef
CHM1_112,426,721 - 2,444,792 (-)NCBICHM1_1
T2T-CHM13v2.011,949,626 - 1,968,240 (-)NCBIT2T-CHM13v2.0
Pank4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,807,744 - 170,824,478 (+)NCBIGRCr8
mRatBN7.25165,525,340 - 165,542,139 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,525,402 - 165,542,135 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5168,230,846 - 168,247,308 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,052,260 - 170,068,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,014,792 - 170,031,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,367,593 - 172,384,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,367,398 - 172,384,269 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05175,823,564 - 175,840,048 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45171,767,041 - 171,783,525 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15171,777,535 - 171,794,011 (+)NCBI
Celera5163,731,885 - 163,748,343 (+)NCBICelera
Cytogenetic Map5q36NCBI
Pank4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,702,909 - 8,716,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554868,703,236 - 8,716,017 (+)NCBIChiLan1.0ChiLan1.0
PANK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,721,273 - 225,741,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,381,893 - 224,402,477 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011,238,821 - 1,259,139 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112,378,116 - 2,391,642 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12,378,116 - 2,395,738 (-)Ensemblpanpan1.1panPan2
PANK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1557,370,624 - 57,386,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl557,370,946 - 57,386,089 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0557,574,838 - 57,590,295 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,574,838 - 57,590,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,566,341 - 57,581,652 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0557,458,666 - 57,473,975 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,848,372 - 57,863,687 (-)NCBIUU_Cfam_GSD_1.0
Pank4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,401,402 - 28,416,483 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,048,597 - 1,065,364 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,049,467 - 1,064,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PANK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl664,393,102 - 64,407,448 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1664,393,092 - 64,407,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,615,182 - 58,629,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PANK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,030,853 - 129,050,944 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,030,904 - 129,050,636 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605433,377,617 - 33,396,652 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pank4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,519,382 - 7,532,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,519,347 - 7,532,116 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pank4
474 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1099
Count of miRNA genes:473
Interacting mature miRNAs:547
Transcripts:ENSMUST00000030931, ENSMUST00000070953, ENSMUST00000105632, ENSMUST00000128297, ENSMUST00000129386, ENSMUST00000148299, ENSMUST00000148934
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
RH125175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384154,980,631 - 154,980,714UniSTSGRCm38
MGSCv374154,354,740 - 154,354,823UniSTSGRCm37
Celera4157,252,709 - 157,252,792UniSTS
Cytogenetic Map4E2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001406056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_131230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC012520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R75150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030931   ⟹   ENSMUSP00000030931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,048,580 - 155,065,328 (+)Ensembl
GRCm38.p6 Ensembl4154,964,123 - 154,980,871 (+)Ensembl
Ensembl Acc Id: ENSMUST00000070953   ⟹   ENSMUSP00000064330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,048,590 - 155,065,395 (+)Ensembl
GRCm38.p6 Ensembl4154,964,133 - 154,980,938 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,058,990 - 155,065,395 (+)Ensembl
GRCm38.p6 Ensembl4154,974,533 - 154,980,938 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,060,736 - 155,063,681 (+)Ensembl
GRCm38.p6 Ensembl4154,976,279 - 154,979,224 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,061,035 - 155,065,391 (+)Ensembl
GRCm38.p6 Ensembl4154,976,578 - 154,980,934 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,060,728 - 155,063,611 (+)Ensembl
GRCm38.p6 Ensembl4154,976,271 - 154,979,154 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148934   ⟹   ENSMUSP00000125663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,054,456 - 155,065,346 (+)Ensembl
GRCm38.p6 Ensembl4154,969,999 - 154,980,889 (+)Ensembl
RefSeq Acc Id: NM_001305804   ⟹   NP_001292733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
GRCm384154,964,123 - 154,980,938 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001406051   ⟹   NP_001392980
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,055,710 (+)NCBI
RefSeq Acc Id: NM_001406052   ⟹   NP_001392981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,055,710 (+)NCBI
RefSeq Acc Id: NM_001406053   ⟹   NP_001392982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,055,710 (+)NCBI
RefSeq Acc Id: NM_001406054   ⟹   NP_001392983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,049,763 (+)NCBI
RefSeq Acc Id: NM_001406055   ⟹   NP_001392984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,049,763 (+)NCBI
RefSeq Acc Id: NM_001406056   ⟹   NP_001392985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
RefSeq Acc Id: NM_172990   ⟹   NP_766578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
GRCm384154,964,123 - 154,980,938 (+)NCBI
MGSCv374154,338,242 - 154,355,047 (+)RGD
Celera4157,236,178 - 157,253,016 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_131230
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,580 - 155,065,395 (+)NCBI
GRCm384154,964,123 - 154,980,938 (+)NCBI
Sequence:
RefSeq Acc Id: NR_176003
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,049,763 (+)NCBI
RefSeq Acc Id: NR_176004
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
RefSeq Acc Id: NR_176005
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
RefSeq Acc Id: NR_176006
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
RefSeq Acc Id: NR_176007
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,048,594 - 155,065,395 (+)NCBI
Protein Sequences
GenBank Protein DAA00010 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030931.5
  ENSMUSP00000064330.5
  ENSMUSP00000125663.2
RefSeq Acc Id: NP_766578   ⟸   NM_172990
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001292733   ⟸   NM_001305804
- Peptide Label: isoform 1
- Sequence:
Ensembl Acc Id: ENSMUSP00000064330   ⟸   ENSMUST00000070953
Ensembl Acc Id: ENSMUSP00000125663   ⟸   ENSMUST00000148934
Ensembl Acc Id: ENSMUSP00000030931   ⟸   ENSMUST00000030931
RefSeq Acc Id: NP_001392985   ⟸   NM_001406056
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001392981   ⟸   NM_001406052
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001392982   ⟸   NM_001406053
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001392980   ⟸   NM_001406051
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001392984   ⟸   NM_001406055
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001392983   ⟸   NM_001406054
- Peptide Label: isoform 6
Protein Domains
Damage-control phosphatase ARMT1-like metal-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80YV4-F1-model_v2 AlphaFold Q80YV4 1-820 view protein structure

Promoters
RGD ID:6835411
Promoter ID:MM_KWN:41117
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000024366,   OTTMUST00000024367,   XM_001475661_GM4386
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,338,011 - 154,338,511 (+)MPROMDB
RGD ID:6835815
Promoter ID:MM_KWN:41118
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:UC008WCM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,344,266 - 154,344,766 (+)MPROMDB
RGD ID:6847829
Promoter ID:MM_ACW:36782
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:PANK4.JSEP07,   PANK4.NSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,344,901 - 154,345,401 (+)MPROMDB
RGD ID:6835814
Promoter ID:MM_KWN:41119
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:ENSMUST00000105632,   UC008WCN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,348,366 - 154,349,007 (+)MPROMDB
RGD ID:6835813
Promoter ID:MM_KWN:41120
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Spleen
Transcripts:OTTMUST00000024370,   OTTMUST00000024371,   OTTMUST00000024372
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,350,324 - 154,350,824 (+)MPROMDB
RGD ID:6885754
Promoter ID:EPDNEW_M6328
Type:multiple initiation site
Name:Pank4_1
Description:Mus musculus pantothenate kinase 4 , transcript variant 3, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384154,964,137 - 154,964,197EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387466 AgrOrtholog
Ensembl Genes ENSMUSG00000029056 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030931.11 UniProtKB/Swiss-Prot
  ENSMUST00000070953.11 UniProtKB/Swiss-Prot
  ENSMUST00000148934.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1700.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.420.510 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Uncharacterised protein PF01937, DUF89, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Uncharacterised protein PF01937, DUF89, domain 3 UniProtKB/Swiss-Prot
InterPro AF1104-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  At2g17340_3_helix_bundle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF89 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PanK_long UniProtKB/Swiss-Prot
  Type_II_PanK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269614 UniProtKB/Swiss-Prot
MGD MGI:2387466 ENTREZGENE
NCBI Gene Pank4 ENTREZGENE
PANTHER 4'-PHOSPHOPANTETHEINE PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF89 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fumble UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pank4 PhenoGen
PIRSF PanK_long UniProtKB/Swiss-Prot
Superfamily-SCOP SSF111321 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F7B6K4_MOUSE UniProtKB/TrEMBL
  PANK4_MOUSE UniProtKB/Swiss-Prot
  Q05CZ0_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1AZN5 UniProtKB/Swiss-Prot
  B1AZN6 UniProtKB/Swiss-Prot
  Q7M751 UniProtKB/Swiss-Prot
  Q8BQE9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-12 Pank4  pantothenate kinase 4  Gm42363  predicted gene, 42363  Data merged from RGD:10007777 737654 PROVISIONAL