Ccna2 (cyclin A2) - Rat Genome Database

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Gene: Ccna2 (cyclin A2) Mus musculus
Analyze
Symbol: Ccna2
Name: cyclin A2
RGD ID: 1550849
MGI Page MGI
Description: Enables protein kinase binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Located in cytoplasm; female pronucleus; and male pronucleus. Part of cyclin A2-CDK2 complex. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and sensory organ. Orthologous to human CCNA2 (cyclin A2); PARTICIPATES IN G1/S transition pathway; p53 signaling pathway; cell cycle pathway, mitotic; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 1-chloro-2,4-dinitrobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA408589; Cc; Ccn; Ccn-; Ccn-1; Ccn1; Ccna; Cyc; Cyca; CycA2; Cyclin A2 (Cyclin A); cyclin-A; cyclin-A2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,619,014 - 36,627,187 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,619,014 - 36,626,299 (-)Ensembl
GRCm38336,564,865 - 36,573,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,463,787 - 36,470,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,756,414 - 36,763,490 (-)NCBImm8
Celera336,449,044 - 36,457,213 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-Tetrandrine  (ISO)
(-)-citrinin  (ISO)
(20R)-protopanaxadiol  (ISO)
(R)-mevalonic acid  (ISO)
(S)-(-)-perillyl alcohol  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
19-Nor-17alpha-pregn-5(10)-en-20-yne-3alpha,17beta-diol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-diaminotoluene  (EXP)
2,6-di-tert-butyl-4-methylphenol  (EXP)
2-acetamidofluorene  (ISO)
2-methoxy-17beta-estradiol  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxynon-2-enal  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
4-nitroquinoline N-oxide  (EXP)
4-nonylphenol  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-O-methylguanine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
AICA ribonucleotide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allose  (ISO)
alpha-hexylcinnamaldehyde  (EXP)
alvocidib  (ISO)
ammonium chloride  (ISO)
amsacrine  (ISO)
andrographolide  (ISO)
androstane  (EXP)
anthracene  (ISO)
antimycin A  (ISO)
aphidicolin  (ISO)
aristolochic acid  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
Aspidin  (ISO)
atrazine  (ISO)
auraptene  (ISO)
azathioprine  (ISO)
baicalein  (ISO)
baicalin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
Butylparaben  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
camptothecin  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP,ISO)
cefaloridine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cicaprost  (EXP)
ciglitazone  (ISO)
cilostazol  (ISO)
Cinobufagin  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cryptolepine  (ISO)
CU-O LINKAGE  (ISO)
cucurbitacin I  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (ISO)
cypermethrin  (ISO)
daidzein  (ISO)
Deguelin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzofuran  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
diethyl maleate  (ISO)
diethyl sulfate  (ISO)
diethylstilbestrol  (EXP)
dioscin  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
doxazosin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
equol  (ISO)
erythromycin estolate  (ISO)
Estragole  (ISO)
etoposide  (ISO)
everolimus  (ISO)
farnesol  (ISO)
fenvalerate  (ISO)
fisetin  (ISO)
flumequine  (EXP)
fluoranthene  (EXP)
fluoxetine  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
fraxetin  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gamma-linolenic acid  (ISO)
genistein  (ISO)
geraniol  (ISO)
glycitein  (ISO)
glyphosate  (ISO)
GW 4064  (ISO)
homocysteine  (ISO)
hydrogen peroxide  (ISO)
hydroxyurea  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
iodoacetic acid  (EXP)
irinotecan  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
lapatinib  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
lithium chloride  (EXP,ISO)
lucanthone  (ISO)
luteolin  (ISO)
LY294002  (EXP,ISO)
malathion  (ISO)
mechlorethamine  (ISO)
MeIQx  (EXP)
menadione  (ISO)
methamphetamine  (ISO)
methcathinone  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
methylparaben  (EXP,ISO)
methylseleninic acid  (ISO)
metolachlor  (ISO)
mifepristone  (ISO)
ML-7  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monobenzyl phthalate  (EXP)
monoethyl phthalate  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
nickel subsulfide  (ISO)
nicotine  (ISO)
nimesulide  (EXP)
nobiletin  (ISO)
nonanoic acid  (EXP)
ochratoxin A  (ISO)
oligomycin A  (EXP)
omacetaxine mepesuccinate  (ISO)
orlistat  (ISO)
ouabain  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
palbociclib  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (ISO)
PCB138  (EXP)
Pentoxifylline  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
perillyl alcohol  (ISO)
phenanthrene  (ISO)
phenethyl isothiocyanate  (ISO)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
phenol  (ISO)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phthalaldehyde  (EXP)
phytoestrogen  (ISO)
picoxystrobin  (ISO)
pinosylvin  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
propanal  (ISO)
propiconazole  (EXP)
propylparaben  (EXP,ISO)
pyrene  (ISO)
pyrimidifen  (ISO)
pyrimidines  (ISO)
quartz  (ISO)
quercetin  (ISO)
quinazolines  (ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
ritonavir  (ISO)
romidepsin  (ISO)
rotenone  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silibinin  (EXP)
silicon dioxide  (EXP,ISO)
silver(1+) nitrate  (ISO)
simvastatin  (ISO)
sirolimus  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium azide  (ISO)
sodium dichromate  (EXP)
Soman  (ISO)
sorafenib  (EXP)
SP2509  (ISO)
stilben-4-ol  (ISO)
stilbene-4,4'-diol  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP,ISO)
tebufenpyrad  (ISO)
teriflunomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
trabectedin  (ISO)
trans-pinosylvin  (ISO)
trans-stilbene-4,4'-diol  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
Triptolide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
Tylophorine  (ISO)
valproic acid  (ISO)
verteporfin  (EXP)
vorinostat  (ISO)
wogonin  (ISO)
wortmannin  (EXP)
Y-27632  (ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1535334   PMID:7739547   PMID:8226784   PMID:8413252   PMID:8534916   PMID:8547220   PMID:8552401   PMID:8565853   PMID:8575639   PMID:8661727   PMID:8674108   PMID:8730099  
PMID:8822197   PMID:8954727   PMID:8988174   PMID:8995365   PMID:9074935   PMID:9110315   PMID:9371520   PMID:9666304   PMID:10068472   PMID:10082561   PMID:10086336   PMID:10349636  
PMID:10436023   PMID:10500095   PMID:10508527   PMID:10708524   PMID:10864467   PMID:10903917   PMID:10922068   PMID:11007956   PMID:11042159   PMID:11076861   PMID:11086988   PMID:11095619  
PMID:11217851   PMID:11331592   PMID:11463388   PMID:11545166   PMID:11566717   PMID:11850820   PMID:11980909   PMID:11981756   PMID:12477932   PMID:12520002   PMID:12646244   PMID:12941628  
PMID:14561402   PMID:14681479   PMID:14687547   PMID:14699150   PMID:14742445   PMID:15156143   PMID:15159393   PMID:15214576   PMID:15271198   PMID:15315760   PMID:15448153   PMID:15531365  
PMID:15615710   PMID:15649466   PMID:15707957   PMID:15730892   PMID:15782199   PMID:15800025   PMID:15809042   PMID:15838522   PMID:15843407   PMID:15916964   PMID:16007079   PMID:16109376  
PMID:16137671   PMID:16141072   PMID:16141073   PMID:16183859   PMID:16237170   PMID:16428455   PMID:16602821   PMID:16627785   PMID:16678773   PMID:16698852   PMID:16809773   PMID:16962228  
PMID:17000767   PMID:17151017   PMID:17276355   PMID:17325033   PMID:17495221   PMID:17637565   PMID:18077453   PMID:18224709   PMID:18265020   PMID:18292603   PMID:18591257   PMID:18621517  
PMID:18635963   PMID:18819932   PMID:19001847   PMID:19221029   PMID:19233286   PMID:19264965   PMID:19265663   PMID:19371398   PMID:19474320   PMID:19592082   PMID:19889636   PMID:20126974  
PMID:20164416   PMID:20215406   PMID:20487000   PMID:20802531   PMID:20863901   PMID:20926513   PMID:21078875   PMID:21135363   PMID:21185283   PMID:21565702   PMID:21690373   PMID:21731673  
PMID:21737879   PMID:21768366   PMID:21873635   PMID:22232705   PMID:22243368   PMID:22560297   PMID:22802651   PMID:22837015   PMID:22898779   PMID:22957921   PMID:23060211   PMID:23122964  
PMID:23223288   PMID:23342106   PMID:23791195   PMID:23796713   PMID:24012615   PMID:24143284   PMID:24184637   PMID:24380855   PMID:24453338   PMID:24553289   PMID:24662053   PMID:24670654  
PMID:24802190   PMID:24831015   PMID:24879294   PMID:24886500   PMID:24959908   PMID:25196150   PMID:25450615   PMID:25600960   PMID:25615569   PMID:25664857   PMID:25668568   PMID:25784544  
PMID:25993989   PMID:26021489   PMID:26303530   PMID:26363286   PMID:26410627   PMID:26581405   PMID:26764384   PMID:26949251   PMID:27020049   PMID:27141870   PMID:27425595   PMID:27425845  
PMID:27657745   PMID:27708105   PMID:27869164   PMID:28003426   PMID:28067668   PMID:28340616   PMID:28380054   PMID:28527696   PMID:28535371   PMID:28659827   PMID:28768199   PMID:28819014  
PMID:28923932   PMID:29087293   PMID:29632206   PMID:29967292   PMID:30389914   PMID:30410445   PMID:30566624   PMID:30579783   PMID:30718289   PMID:30789911   PMID:30848072   PMID:30850578  
PMID:31024075   PMID:31806625   PMID:31980707   PMID:32032549   PMID:32169905   PMID:32434143   PMID:32703236   PMID:33147210   PMID:33448039   PMID:33846290  


Genomics

Comparative Map Data
Ccna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,619,014 - 36,627,187 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,619,014 - 36,626,299 (-)Ensembl
GRCm38336,564,865 - 36,573,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,463,787 - 36,470,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,756,414 - 36,763,490 (-)NCBImm8
Celera336,449,044 - 36,457,213 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.67NCBI
CCNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4121,816,444 - 121,823,883 (-)EnsemblGRCh38hg38GRCh38
GRCh384121,816,444 - 121,823,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374122,737,599 - 122,745,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,957,975 - 122,964,342 (-)NCBINCBI36hg18NCBI36
Build 344123,096,129 - 123,102,485NCBI
Celera4120,123,415 - 120,130,904 (-)NCBI
Cytogenetic Map4q27NCBI
HuRef4118,464,283 - 118,471,772 (-)NCBIHuRef
CHM1_14122,714,067 - 122,721,556 (-)NCBICHM1_1
Ccna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,427,239 - 119,433,645 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,426,089 - 119,433,577 (-)Ensembl
Rnor_6.02123,274,727 - 123,282,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,890,984 - 142,897,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,062,752 - 123,069,085 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,009,712 - 123,013,946 (-)NCBI
Celera2114,385,123 - 114,391,456 (-)NCBICelera
Cytogenetic Map2q25NCBI
Ccna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBIChiLan1.0ChiLan1.0
CCNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14125,153,810 - 125,161,370 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,153,810 - 125,161,302 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,016,917 - 114,024,816 (-)NCBIMhudiblu_PPA_v0panPan3
CCNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,317,866 - 18,324,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,318,004 - 18,323,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,534,627 - 18,544,698 (+)NCBI
ROS_Cfam_1.01918,436,112 - 18,446,091 (+)NCBI
UMICH_Zoey_3.11918,387,227 - 18,397,254 (+)NCBI
UNSW_CanFamBas_1.01918,668,909 - 18,678,936 (+)NCBI
UU_Cfam_GSD_1.01919,144,640 - 19,154,711 (+)NCBI
Ccna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBI
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18102,260,346 - 102,266,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,455,845 - 109,461,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,092,410 - 69,100,191 (-)NCBI
ChlSab1.1 Ensembl769,093,543 - 69,099,497 (-)Ensembl
Vero_WHO_p1.0NW_02366603748,053,566 - 48,060,924 (-)NCBI
Ccna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,097,002 - 2,104,244 (-)NCBI

Position Markers
RH124728  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,566,008 - 36,566,205UniSTSGRCm38
MGSCv37336,464,930 - 36,465,127UniSTSGRCm37
Celera336,450,198 - 36,450,395UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,566,013 - 36,566,630UniSTSGRCm38
MGSCv37336,464,935 - 36,465,552UniSTSGRCm37
Celera336,450,203 - 36,450,824UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC138456P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,570,787 - 36,570,904UniSTSGRCm38
MGSCv37336,469,709 - 36,469,826UniSTSGRCm37
Celera336,456,004 - 36,456,121UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC152357P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,571,925 - 36,572,098UniSTSGRCm38
MGSCv37336,470,847 - 36,471,020UniSTSGRCm37
Celera336,457,142 - 36,457,315UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
UniSTS:224444  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,565,461 - 36,565,641UniSTSGRCm38
MGSCv37336,464,383 - 36,464,563UniSTSGRCm37
Celera336,449,640 - 36,449,830UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
AA850100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,565,432 - 36,565,569UniSTSGRCm38
MGSCv37336,464,354 - 36,464,491UniSTSGRCm37
Celera336,449,611 - 36,449,757UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
Bbs7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,573,199 - 36,573,600UniSTSGRCm38
MGSCv37336,472,121 - 36,472,522UniSTSGRCm37
Celera336,458,428 - 36,458,830UniSTS
Cytogenetic Map3BUniSTS
cM Map3 UniSTS
PMC165670P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,571,938 - 36,572,095UniSTSGRCm38
MGSCv37336,470,860 - 36,471,017UniSTSGRCm37
Celera336,457,155 - 36,457,312UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC207566P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,570,889 - 36,571,751UniSTSGRCm38
MGSCv37336,469,811 - 36,470,673UniSTSGRCm37
Celera336,456,106 - 36,456,968UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC290270P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,572,308 - 36,572,568UniSTSGRCm38
MGSCv37336,471,230 - 36,471,490UniSTSGRCm37
Celera336,457,524 - 36,457,784UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC290270P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,570,896 - 36,571,772UniSTSGRCm38
MGSCv37336,469,818 - 36,470,694UniSTSGRCm37
Celera336,456,113 - 36,456,989UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC309667P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,571,938 - 36,572,099UniSTSGRCm38
MGSCv37336,470,860 - 36,471,021UniSTSGRCm37
Celera336,457,155 - 36,457,316UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC317048P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,567,890 - 36,568,693UniSTSGRCm38
MGSCv37336,466,812 - 36,467,615UniSTSGRCm37
Celera336,452,056 - 36,452,858UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC86923P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,571,946 - 36,572,095UniSTSGRCm38
MGSCv37336,470,868 - 36,471,017UniSTSGRCm37
Celera336,457,163 - 36,457,312UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC86923P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,571,946 - 36,572,794UniSTSGRCm38
MGSCv37336,470,868 - 36,471,716UniSTSGRCm37
Celera336,457,163 - 36,458,014UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC86923P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,572,702 - 36,572,794UniSTSGRCm38
MGSCv37336,471,624 - 36,471,716UniSTSGRCm37
Celera336,457,918 - 36,458,014UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
PMC212738P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,566,598 - 36,567,098UniSTSGRCm38
MGSCv37336,465,520 - 36,466,020UniSTSGRCm37
Celera336,450,792 - 36,451,267UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
D3Nds36  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,565,461 - 36,565,672UniSTSGRCm38
MGSCv37336,464,383 - 36,464,594UniSTSGRCm37
Celera336,449,640 - 36,449,861UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
RH134560  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,566,252 - 36,567,046UniSTSGRCm38
MGSCv37336,465,174 - 36,465,968UniSTSGRCm37
Celera336,450,442 - 36,451,215UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Ccna2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,565,002 - 36,565,117UniSTSGRCm38
MGSCv37336,463,924 - 36,464,039UniSTSGRCm37
Celera336,449,181 - 36,449,296UniSTS
Cytogenetic Map3BUniSTS
cM Map319.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3447125538471355Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3752111468809613Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1018416183277639Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31018416183277639Mouse
1357857Lvrq5_mliver weight QTL 5 (mouse)Not determined31018416183277639Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31018416183277639Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1018416183277639Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1018416183277639Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31018416183277639Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31157630445576442Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1823401952234019Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32012071354125954Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33188340565883548Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33258161158109942Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33258161158109942Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33327305245962044Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33358101667581166Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33384462467844807Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33384462467844807Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33426332068263320Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33466868268668682Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33550000069500000Mouse
14746977Manh53_mmandible shape 53 (mouse)33601785970017859Mouse
13441578Jobes1b_mjuvenile obesity 1b (mouse)33648000036850000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1086
Count of miRNA genes:547
Interacting mature miRNAs:672
Transcripts:ENSMUST00000029270, ENSMUST00000145309, ENSMUST00000147380, ENSMUST00000156575
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB642910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z26580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029270   ⟹   ENSMUSP00000029270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,619,014 - 36,626,299 (-)Ensembl
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145309
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,624,600 - 36,626,113 (-)Ensembl
GRCm38.p6 Ensembl336,570,451 - 36,571,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147380   ⟹   ENSMUSP00000118239
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,620,127 - 36,626,076 (-)Ensembl
GRCm38.p6 Ensembl336,565,978 - 36,571,927 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156575
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,619,784 - 36,620,994 (-)Ensembl
GRCm38.p6 Ensembl336,565,635 - 36,566,845 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196316   ⟹   ENSMUSP00000142946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,620,127 - 36,625,700 (-)Ensembl
GRCm38.p6 Ensembl336,565,978 - 36,571,551 (-)Ensembl
RefSeq Acc Id: NM_009828   ⟹   NP_033958
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39336,619,014 - 36,627,187 (-)NCBI
GRCm38336,564,865 - 36,573,038 (-)NCBI
MGSCv37336,463,787 - 36,470,918 (-)RGD
Celera336,449,044 - 36,457,213 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033958   ⟸   NM_009828
- UniProtKB: P51943 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000118239   ⟸   ENSMUST00000147380
RefSeq Acc Id: ENSMUSP00000029270   ⟸   ENSMUST00000029270
RefSeq Acc Id: ENSMUSP00000142946   ⟸   ENSMUST00000196316
Protein Domains
Cyclin N-terminal   Cyclin_N2

Promoters
RGD ID:6833543
Promoter ID:MM_KWN:34093
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000014823
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36336,465,626 - 36,466,227 (-)MPROMDB
RGD ID:6833544
Promoter ID:MM_KWN:34094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000014821,   OTTMUST00000014822,   OTTMUST00000086013,   UC008OZO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36336,470,831 - 36,471,331 (-)MPROMDB
RGD ID:6880498
Promoter ID:EPDNEW_M3700
Type:initiation region
Name:Ccna2_1
Description:Mus musculus cyclin A2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38336,571,960 - 36,572,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108069 AgrOrtholog
Ensembl Genes ENSMUSG00000027715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029270 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118239 UniProtKB/TrEMBL
  ENSMUSP00000142946 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029270 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000147380 UniProtKB/TrEMBL
  ENSMUST00000196316 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12428 UniProtKB/Swiss-Prot
MGD MGI:108069 ENTREZGENE
NCBI Gene 12428 ENTREZGENE
PANTHER PTHR10177 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CCNA2 RGD
PhenoGen Ccna2 PhenoGen
PIRSF Cyclin_A_B_D_E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEY1_MOUSE UniProtKB/TrEMBL
  CCNA2_MOUSE UniProtKB/Swiss-Prot
  D6RIK7_MOUSE UniProtKB/TrEMBL
  P51943 ENTREZGENE
UniProt Secondary Q61459 UniProtKB/Swiss-Prot
  Q8BRG1 UniProtKB/Swiss-Prot