Rnf167 (ring finger protein 167) - Rat Genome Database

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Gene: Rnf167 (ring finger protein 167) Mus musculus
Analyze
Symbol: Rnf167
Name: ring finger protein 167
RGD ID: 1550836
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular response to leucine starvation; protein polyubiquitination; and regulation of TORC1 signaling. Predicted to be located in endosome. Predicted to be active in cytosol and endolysosome membrane. Is expressed in several structures, including central nervous system; genitourinary system; liver; and neural retina. Orthologous to human RNF167 (ring finger protein 167).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610010G05Rik; 5730408C10Rik; AU019305; AV328608; E3 ubiquitin-protein ligase RNF167; novel PA domain and C3HC4 type zinc finger (RING finger) containing protein; RING-type E3 ubiquitin transferase RNF167; RP23-326P7.8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,538,056 - 70,542,247 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,538,061 - 70,542,247 (+)EnsemblGRCm39 Ensembl
GRCm381170,647,230 - 70,651,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,647,235 - 70,651,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,461,091 - 70,464,923 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,463,784 - 70,467,616 (+)NCBIMGSCv36mm8
Celera1178,198,564 - 78,202,365 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17015433   PMID:18287559   PMID:18799693   PMID:21873635   PMID:22174793   PMID:23129617  


Genomics

Comparative Map Data
Rnf167
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,538,056 - 70,542,247 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,538,061 - 70,542,247 (+)EnsemblGRCm39 Ensembl
GRCm381170,647,230 - 70,651,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,647,235 - 70,651,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,461,091 - 70,464,923 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,463,784 - 70,467,616 (+)NCBIMGSCv36mm8
Celera1178,198,564 - 78,202,365 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
RNF167
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,940,092 - 4,945,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,940,008 - 4,945,222 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,843,387 - 4,848,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,784,375 - 4,789,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,784,374 - 4,789,260NCBI
Celera174,858,441 - 4,863,328 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,731,220 - 4,736,107 (+)NCBIHuRef
CHM1_1174,852,968 - 4,857,851 (+)NCBICHM1_1
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBIT2T-CHM13v2.0
Rnf167
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,859,254 - 55,863,546 (+)NCBIGRCr8
mRatBN7.21055,360,603 - 55,364,927 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,360,543 - 55,364,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,041,245 - 60,045,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,529,751 - 59,534,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,028,857 - 55,033,149 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,268,331 - 57,272,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,268,375 - 57,272,660 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,013,953 - 57,018,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,527,033 - 57,531,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,540,655 - 57,544,941 (+)NCBI
Celera1054,506,191 - 54,510,483 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rnf167
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,353,291 - 10,357,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,352,650 - 10,357,214 (+)NCBIChiLan1.0ChiLan1.0
RNF167
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,549,927 - 12,555,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,518,383 - 14,523,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,975,724 - 4,981,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,975,849 - 4,981,335 (+)Ensemblpanpan1.1panPan2
RNF167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,673,540 - 31,676,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,674,284 - 31,676,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,810,460 - 31,815,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,775,873 - 31,780,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,775,873 - 31,780,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,742,411 - 31,747,298 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,702,117 - 31,706,971 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,878,493 - 31,883,347 (-)NCBIUU_Cfam_GSD_1.0
Rnf167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,129,789 - 53,134,251 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,766,907 - 2,770,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,766,724 - 2,771,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,966,032 - 51,970,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,966,028 - 51,970,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,034,738 - 54,039,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,421,744 - 4,426,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,421,744 - 4,428,576 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,207,418 - 17,212,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf167
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,798,696 - 8,802,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,797,907 - 8,802,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf167
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1737
Count of miRNA genes:671
Interacting mature miRNAs:854
Transcripts:ENSMUST00000037534, ENSMUST00000131071, ENSMUST00000141237, ENSMUST00000141537, ENSMUST00000141695, ENSMUST00000143313, ENSMUST00000151034, ENSMUST00000152160, ENSMUST00000152276, ENSMUST00000152458
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse

Markers in Region
BE136355  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,651,232 - 70,651,370UniSTSGRCm38
MGSCv371170,464,734 - 70,464,872UniSTSGRCm37
Celera1178,202,176 - 78,202,314UniSTS
Cytogenetic Map11B4UniSTS
Whitehead/MRC_RH11908.31UniSTS
RH136477  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,651,110 - 70,651,305UniSTSGRCm38
MGSCv371170,464,612 - 70,464,807UniSTSGRCm37
Celera1178,202,054 - 78,202,249UniSTS
Cytogenetic Map11B4UniSTS
AV328608  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,651,275 - 70,651,370UniSTSGRCm38
MGSCv371170,464,777 - 70,464,872UniSTSGRCm37
Celera1178,202,219 - 78,202,314UniSTS
Cytogenetic Map11B4UniSTS
Whitehead/MRC_RH11908.31UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001316728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI840160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV655579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV662846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000037534   ⟹   ENSMUSP00000036472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,113 - 70,542,247 (+)Ensembl
GRCm38.p6 Ensembl1170,647,287 - 70,651,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,395 - 70,539,080 (+)Ensembl
GRCm38.p6 Ensembl1170,647,569 - 70,648,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,769 - 70,541,160 (+)Ensembl
GRCm38.p6 Ensembl1170,647,943 - 70,650,334 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,061 - 70,538,932 (+)Ensembl
GRCm38.p6 Ensembl1170,647,235 - 70,648,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141695   ⟹   ENSMUSP00000121511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,113 - 70,542,238 (+)Ensembl
GRCm38.p6 Ensembl1170,647,287 - 70,651,412 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,539,948 - 70,540,358 (+)Ensembl
GRCm38.p6 Ensembl1170,649,122 - 70,649,532 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,901 - 70,541,917 (+)Ensembl
GRCm38.p6 Ensembl1170,648,075 - 70,651,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152160   ⟹   ENSMUSP00000115057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,381 - 70,540,591 (+)Ensembl
GRCm38.p6 Ensembl1170,647,555 - 70,649,765 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,538,387 - 70,542,236 (+)Ensembl
GRCm38.p6 Ensembl1170,647,561 - 70,651,410 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,540,762 - 70,541,160 (+)Ensembl
GRCm38.p6 Ensembl1170,649,936 - 70,650,334 (+)Ensembl
RefSeq Acc Id: NM_001316728   ⟹   NP_001303657
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,061 - 70,542,247 (+)NCBI
GRCm381170,647,235 - 70,651,421 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363134   ⟹   NP_001350063
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,061 - 70,542,247 (+)NCBI
GRCm381170,647,235 - 70,651,421 (+)NCBI
Sequence:
RefSeq Acc Id: NM_027445   ⟹   NP_081721
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,061 - 70,542,247 (+)NCBI
GRCm381170,647,235 - 70,651,421 (+)NCBI
MGSCv371170,461,091 - 70,464,923 (+)RGD
Celera1178,198,564 - 78,202,365 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534193   ⟹   XP_006534256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,143 - 70,542,247 (+)NCBI
GRCm381170,647,292 - 70,651,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534195   ⟹   XP_006534258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,539,239 - 70,542,247 (+)NCBI
GRCm381170,648,413 - 70,651,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156985   ⟹   XP_036012878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,104 - 70,542,247 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780049
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,538,056 - 70,542,247 (+)NCBI
GRCm381170,647,230 - 70,651,421 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081721   ⟸   NM_027445
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3U4S5 (UniProtKB/Swiss-Prot),   Q91XF4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534256   ⟸   XM_006534193
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534258   ⟸   XM_006534195
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001303657   ⟸   NM_001316728
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001350063   ⟸   NM_001363134
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000115057   ⟸   ENSMUST00000152160
RefSeq Acc Id: ENSMUSP00000036472   ⟸   ENSMUST00000037534
RefSeq Acc Id: ENSMUSP00000121511   ⟸   ENSMUST00000141695
RefSeq Acc Id: XP_036012878   ⟸   XM_036156985
- Peptide Label: isoform X2
Protein Domains
PA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91XF4-F1-model_v2 AlphaFold Q91XF4 1-347 view protein structure

Promoters
RGD ID:6821744
Promoter ID:MM_KWN:8241
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000092951,   OTTMUST00000013697,   OTTMUST00000013698,   OTTMUST00000013699,   OTTMUST00000013700,   OTTMUST00000013701,   OTTMUST00000013702,   OTTMUST00000013704,   OTTMUST00000013705,   OTTMUST00000077376,   UC007JVS.1,   UC007JVU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,460,856 - 70,463,477 (+)MPROMDB
RGD ID:8675350
Promoter ID:EPDNEW_M15705
Type:initiation region
Name:Rnf167_1
Description:Mus musculus ring finger protein 167 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15706  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,647,287 - 70,647,347EPDNEW
RGD ID:8675352
Promoter ID:EPDNEW_M15706
Type:initiation region
Name:Rnf167_2
Description:Mus musculus ring finger protein 167 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15705  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,647,596 - 70,647,656EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917760 AgrOrtholog
Ensembl Genes ENSMUSG00000040746 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037534 ENTREZGENE
  ENSMUST00000037534.8 UniProtKB/Swiss-Prot
  ENSMUST00000141695 ENTREZGENE
  ENSMUST00000141695.8 UniProtKB/TrEMBL
  ENSMUST00000152160.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
  3.50.30.30 UniProtKB/Swiss-Prot
InterPro PA_dom_sf UniProtKB/Swiss-Prot
  PA_domain UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING-CH UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  ZNRF4/RNF13/RNF167_PA UniProtKB/Swiss-Prot
KEGG Report mmu:70510 UniProtKB/Swiss-Prot
MGD MGI:1917760 ENTREZGENE
NCBI Gene 70510 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF6 UniProtKB/Swiss-Prot
  SI:CH211-59O9.10 UniProtKB/Swiss-Prot
Pfam PF02225 UniProtKB/Swiss-Prot
  zf-RING_2 UniProtKB/Swiss-Prot
PhenoGen Rnf167 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
  RINGv UniProtKB/Swiss-Prot
Superfamily-SCOP PA domain UniProtKB/Swiss-Prot
  RING/U-box UniProtKB/Swiss-Prot
UniProt D6RCH3_MOUSE UniProtKB/TrEMBL
  D6RH35_MOUSE UniProtKB/TrEMBL
  Q3U4S5 ENTREZGENE
  Q91XF4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U4S5 UniProtKB/Swiss-Prot