Tsc22d3 (TSC22 domain family, member 3) - Rat Genome Database

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Gene: Tsc22d3 (TSC22 domain family, member 3) Mus musculus
Analyze
Symbol: Tsc22d3
Name: TSC22 domain family, member 3
RGD ID: 1550809
MGI Page MGI
Description: Enables MRF binding activity. Acts upstream of or within several processes, including negative regulation of activation-induced cell death of T cells; negative regulation of skeletal muscle tissue development; and negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Is expressed in several structures, including early conceptus; genitourinary system; nervous system; sensory organ; and viscerocranium. Orthologous to human TSC22D3 (TSC22 domain family member 3); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: delta sleep inducing peptide, immunoreactor; DIP; Ds; Dsip1; Gi; Gilz; glucocorticoid-induced leucine zipper protein; long glucocorticoid-induced leucine zipper protein; Tilz3; TSC-22R; TSC22 domain family 3; TSC22 domain family protein 3; TSC22-related inducible leucine zipper 3; TSC22-related-inducible leucine zipper 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,440,277 - 139,501,271 (-)NCBIGRCm39mm39
GRCm39 EnsemblX139,440,277 - 139,501,408 (-)Ensembl
GRCm38X140,539,528 - 140,600,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,539,528 - 140,600,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X137,074,067 - 137,135,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X135,885,892 - 135,889,531 (-)NCBImm8
CeleraX123,798,019 - 123,859,465 (-)NCBICelera
Cytogenetic MapXF1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-demecolcine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-phenoxybenzoic acid  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antimonite  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenous acid  (EXP,ISO)
avobenzone  (ISO)
azoxystrobin  (ISO)
barium chloride  (EXP)
barium(0)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
boron nitride  (ISO)
buspirone  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
cobalt atom  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (EXP)
corticosterone  (ISO)
cortisol  (EXP,ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP,ISO)
cyhalothrin  (EXP)
DDE  (EXP,ISO)
DDT  (EXP)
Deguelin  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP,ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
diclofenac  (EXP)
dieldrin  (ISO)
dimethyl sulfoxide  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
Erionite  (EXP)
erythromycin estolate  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
fluoranthene  (EXP,ISO)
flutamide  (ISO)
folpet  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
genistein  (ISO)
geraniol  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (ISO)
Indeno[1,2,3-cd]pyrene  (EXP)
isoprenaline  (EXP)
lactacystin  (EXP)
lead diacetate  (EXP,ISO)
lead nitrate  (EXP)
lead(0)  (EXP)
lead(2+)  (EXP)
levofloxacin  (ISO)
liquiritigenin  (ISO)
lithium atom  (EXP)
lithium chloride  (EXP)
lithium hydride  (EXP)
medroxyprogesterone acetate  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
metyrapone  (ISO)
mifepristone  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nevirapine  (ISO)
nickel sulfate  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
oxycodone  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
permethrin  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
Ptaquiloside  (EXP)
quercetin  (ISO)
resmethrin  (EXP)
resveratrol  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SCH 23390  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
succimer  (EXP)
sulforaphane  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thiabendazole  (ISO)
thifluzamide  (ISO)
tin atom  (EXP)
tin(0)  (EXP)
tin(II) chloride (anhydrous)  (EXP)
titanium dioxide  (EXP)
tolylfluanid  (EXP)
topotecan  (ISO)
tremolite asbestos  (EXP)
tributylstannane  (ISO)
triclosan  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vandetanib  (ISO)
vinclozolin  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP)
zinc(0)  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adipose tissue physiology  (IAGP)
abnormal circulating hormone level  (IAGP)
abnormal circulating sodium level  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal ion homeostasis  (IAGP)
abnormal male germ cell apoptosis  (IAGP)
abnormal seminiferous tubule epithelium morphology  (IAGP)
abnormal spermatid morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal spermatogonia proliferation  (IAGP)
abnormal susceptibility to autoimmune disorder  (IAGP)
abnormal T cell subpopulation ratio  (IAGP)
abnormal testis size  (IAGP)
abnormal thymus cell ratio  (IAGP)
arrest of male meiosis  (IAGP)
arrest of spermatogenesis  (IAGP)
azoospermia  (IAGP)
decreased body weight  (IAGP)
decreased circulating corticosterone level  (IAGP)
decreased DN3 thymocyte number  (IAGP)
decreased male germ cell number  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased susceptibility to diet-induced hepatic steatosis  (IAGP)
decreased testis weight  (IAGP)
decreased thymus weight  (IAGP)
increased circulating follicle stimulating hormone level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating potassium level  (IAGP)
increased circulating testosterone level  (IAGP)
increased DN4 thymocyte number  (IAGP)
increased erythroblast number  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased interleukin-17 secretion  (IAGP)
increased Leydig cell number  (IAGP)
increased pancreatic alpha cell number  (IAGP)
increased Sertoli cell number  (IAGP)
increased susceptibility to type IV hypersensitivity reaction  (IAGP)
male infertility  (IAGP)
small testis  (IAGP)
References

Additional References at PubMed
PMID:9430225   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11104669   PMID:11397794   PMID:11468175   PMID:11774584   PMID:12391160   PMID:12393603   PMID:12477932   PMID:12671681  
PMID:15031210   PMID:15319285   PMID:15489334   PMID:15561968   PMID:16141072   PMID:16141073   PMID:16204313   PMID:16216878   PMID:17147695   PMID:17492054   PMID:17574218   PMID:17910039  
PMID:17956870   PMID:18084007   PMID:18287559   PMID:18996377   PMID:19380724   PMID:19553536   PMID:19778379   PMID:20059953   PMID:20124407   PMID:20211142   PMID:20412781   PMID:20496421  
PMID:21267068   PMID:21965677   PMID:22110132   PMID:22124125   PMID:22125095   PMID:22396737   PMID:22556341   PMID:22571926   PMID:22967998   PMID:22974489   PMID:22988430   PMID:23090754  
PMID:23335223   PMID:23495141   PMID:23516608   PMID:23595884   PMID:23696835   PMID:24480152   PMID:24703841   PMID:24860090   PMID:24952961   PMID:25114100   PMID:25146427   PMID:25168242  
PMID:25362183   PMID:25708718   PMID:25876761   PMID:25964494   PMID:26038125   PMID:26077873   PMID:26276664   PMID:26612340   PMID:26639395   PMID:27012318   PMID:27465291   PMID:27578244  
PMID:27629417   PMID:27754788   PMID:27793999   PMID:27934944   PMID:28094030   PMID:28373208   PMID:28499885   PMID:28771604   PMID:29278648   PMID:29344311   PMID:30078709   PMID:30126904  
PMID:30371949   PMID:30723476   PMID:31001916   PMID:31346158   PMID:31501614   PMID:31711918   PMID:31840802   PMID:32030813   PMID:32117233   PMID:32463582   PMID:33247627   PMID:33889157  


Genomics

Comparative Map Data
Tsc22d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,440,277 - 139,501,271 (-)NCBIGRCm39mm39
GRCm39 EnsemblX139,440,277 - 139,501,408 (-)Ensembl
GRCm38X140,539,528 - 140,600,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,539,528 - 140,600,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X137,074,067 - 137,135,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X135,885,892 - 135,889,531 (-)NCBImm8
CeleraX123,798,019 - 123,859,465 (-)NCBICelera
Cytogenetic MapXF1NCBI
TSC22D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX107,713,221 - 107,777,342 (-)EnsemblGRCh38hg38GRCh38
GRCh38X107,713,221 - 107,777,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X106,956,451 - 107,019,218 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X106,843,107 - 106,905,673 (-)NCBINCBI36hg18NCBI36
CeleraX107,427,403 - 107,489,966 (-)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX96,580,831 - 96,643,067 (-)NCBIHuRef
CHM1_1X106,867,386 - 106,929,923 (-)NCBICHM1_1
Tsc22d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X104,217,898 - 104,277,935 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX104,217,925 - 104,276,861 (-)Ensembl
Rnor_6.0X111,884,285 - 111,944,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX111,884,295 - 111,887,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0352,655,031 - 52,715,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X128,336,408 - 128,340,027 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X128,409,842 - 128,413,460 (-)NCBI
Celera343,710,349 - 43,713,973 (+)NCBICelera
Cytogenetic MapXq32NCBI
Tsc22d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,177,356 - 8,238,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,177,356 - 8,238,373 (+)NCBIChiLan1.0ChiLan1.0
TSC22D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X107,179,077 - 107,242,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX107,179,077 - 107,242,902 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X96,806,179 - 96,870,020 (-)NCBIMhudiblu_PPA_v0panPan3
TSC22D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X81,235,489 - 81,298,290 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX81,235,809 - 81,298,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX67,355,142 - 67,417,939 (-)NCBI
ROS_Cfam_1.0X82,882,231 - 82,945,043 (-)NCBI
UMICH_Zoey_3.1X80,342,439 - 80,405,260 (-)NCBI
UNSW_CanFamBas_1.0X82,054,298 - 82,117,113 (-)NCBI
UU_Cfam_GSD_1.0X81,846,235 - 81,908,809 (-)NCBI
Tsc22d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X80,613,791 - 80,680,477 (-)NCBI
SpeTri2.0NW_0049364996,977,924 - 7,044,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX88,171,329 - 88,233,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X88,171,325 - 88,233,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X102,611,634 - 102,673,219 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X95,535,798 - 95,606,309 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606520,659,327 - 20,723,753 (-)NCBIVero_WHO_p1.0
Tsc22d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248038,701,348 - 8,762,194 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
px-36c9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X140,546,722 - 140,546,829UniSTSGRCm38
MGSCv37X137,081,261 - 137,081,368UniSTSGRCm37
CeleraX123,805,213 - 123,805,320UniSTS
Cytogenetic MapXF1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX122083468161430042Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX103012242163975945Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX139475662152006342Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX134639291166515599Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX126902153160902273Mouse
13208556Lgth14_mbody length 14 (mouse)X95000000151000000Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X123000000153800000Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
13208552Wght12_mweight 12 (mouse)X95000000151000000Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X130000000155000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2817
Count of miRNA genes:758
Interacting mature miRNAs:988
Transcripts:ENSMUST00000055738, ENSMUST00000112995, ENSMUST00000112996, ENSMUST00000123898, ENSMUST00000133023, ENSMUST00000152048
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_122039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF024519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL683809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY071907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU818782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000055738   ⟹   ENSMUSP00000062589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,440,277 - 139,443,936 (-)Ensembl
GRCm38.p6 EnsemblX140,539,528 - 140,543,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112995
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,440,277 - 139,443,417 (-)Ensembl
GRCm38.p6 EnsemblX140,539,528 - 140,542,668 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112996   ⟹   ENSMUSP00000108620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,441,011 - 139,501,408 (-)Ensembl
GRCm38.p6 EnsemblX140,540,262 - 140,600,659 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123898   ⟹   ENSMUSP00000123569
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,441,100 - 139,449,087 (-)Ensembl
GRCm38.p6 EnsemblX140,540,351 - 140,548,338 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133023
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,440,286 - 139,443,850 (-)Ensembl
GRCm38.p6 EnsemblX140,539,537 - 140,543,101 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152048
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,443,852 - 139,449,278 (-)Ensembl
GRCm38.p6 EnsemblX140,543,103 - 140,548,529 (-)Ensembl
RefSeq Acc Id: NM_001077364   ⟹   NP_001070832
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,501,271 (-)NCBI
GRCm38X140,539,528 - 140,600,522 (-)ENTREZGENE
MGSCv37X137,074,067 - 137,135,061 (-)RGD
CeleraX123,798,019 - 123,859,465 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010286   ⟹   NP_034416
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,449,320 (-)NCBI
GRCm38X140,539,528 - 140,548,571 (-)NCBI
MGSCv37X137,074,067 - 137,135,061 (-)RGD
CeleraX123,798,019 - 123,859,465 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_122039
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,443,417 (-)NCBI
GRCm38X140,539,528 - 140,542,668 (-)NCBI
CeleraX123,798,019 - 123,859,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528499   ⟹   XP_006528562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,500,217 (-)NCBI
GRCm38X140,539,528 - 140,599,463 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528500   ⟹   XP_006528563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,499,970 (-)NCBI
GRCm38X140,539,528 - 140,599,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528503   ⟹   XP_006528566
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,443,195 (-)NCBI
GRCm38X140,539,528 - 140,542,443 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528504   ⟹   XP_006528567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,500,456 (-)NCBI
GRCm38X140,539,528 - 140,599,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528505   ⟹   XP_006528568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,499,960 (-)NCBI
GRCm38X140,539,528 - 140,599,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161820   ⟹   XP_036017713
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,440,277 - 139,449,337 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_034416   ⟸   NM_010286
- Peptide Label: isoform 2
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001070832   ⟸   NM_001077364
- Peptide Label: isoform 1
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528567   ⟸   XM_006528504
- Peptide Label: isoform X1
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528562   ⟸   XM_006528499
- Peptide Label: isoform X1
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528563   ⟸   XM_006528500
- Peptide Label: isoform X1
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528568   ⟸   XM_006528505
- Peptide Label: isoform X1
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528566   ⟸   XM_006528503
- Peptide Label: isoform X3
- UniProtKB: Q9Z2S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000108620   ⟸   ENSMUST00000112996
RefSeq Acc Id: ENSMUSP00000062589   ⟸   ENSMUST00000055738
RefSeq Acc Id: ENSMUSP00000123569   ⟸   ENSMUST00000123898
RefSeq Acc Id: XP_036017713   ⟸   XM_036161820
- Peptide Label: isoform X2

Promoters
RGD ID:6849288
Promoter ID:MM_XEF:7952
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4
Transcripts:NM_001015881
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X137,076,536 - 137,077,036 (-)MPROMDB
RGD ID:6846492
Promoter ID:MM_KWN:62073
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000045349,   OTTMUST00000045351,   UC009ULC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X137,077,081 - 137,077,747 (-)MPROMDB
RGD ID:6846471
Promoter ID:MM_KWN:62074
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung
Transcripts:OTTMUST00000045352,   OTTMUST00000045353
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X137,082,534 - 137,083,034 (-)MPROMDB
RGD ID:6848542
Promoter ID:MM_ACW:54115
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:TSC22D3.BSEP07,   TSC22D3.CSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X137,133,631 - 137,134,131 (-)MPROMDB
RGD ID:13681506
Promoter ID:EPDNEW_M24902
Type:multiple initiation site
Name:Tsc22d3_1
Description:Mus musculus TSC22 domain family, member 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24903  EPDNEW_M24904  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X140,543,185 - 140,543,245EPDNEW
RGD ID:13681508
Promoter ID:EPDNEW_M24903
Type:initiation region
Name:Tsc22d3_3
Description:Mus musculus TSC22 domain family, member 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24902  EPDNEW_M24904  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X140,599,481 - 140,599,541EPDNEW
RGD ID:13681510
Promoter ID:EPDNEW_M24904
Type:multiple initiation site
Name:Tsc22d3_2
Description:Mus musculus TSC22 domain family, member 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24902  EPDNEW_M24903  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X140,600,508 - 140,600,568EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1196284 AgrOrtholog
Ensembl Genes ENSMUSG00000031431 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000062589 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108620 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000123569 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055738 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112995 ENTREZGENE
  ENSMUST00000112996 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123898 UniProtKB/TrEMBL
InterPro TSC-22_Dip_Bun UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14605 UniProtKB/Swiss-Prot
MGD MGI:1196284 ENTREZGENE
NCBI Gene 14605 ENTREZGENE
Pfam TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tsc22d3 PhenoGen
PROSITE TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AVF2_MOUSE UniProtKB/TrEMBL
  Q9Z2S7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B1AVF3 UniProtKB/Swiss-Prot
  C6EX03 UniProtKB/Swiss-Prot
  Q3UNI6 UniProtKB/Swiss-Prot
  Q8K160 UniProtKB/Swiss-Prot
  Q9EQN0 UniProtKB/Swiss-Prot
  Q9EQN1 UniProtKB/Swiss-Prot
  Q9EQN2 UniProtKB/Swiss-Prot