Tbcel (tubulin folding cofactor E-like) - Rat Genome Database

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Gene: Tbcel (tubulin folding cofactor E-like) Mus musculus
Analyze
Symbol: Tbcel
Name: tubulin folding cofactor E-like
RGD ID: 1550784
MGI Page MGI
Description: Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TBCEL (tubulin folding cofactor E like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D330014K23; E130107N23Rik; leucine rich repeat containing 35; leucine-rich repeat-containing protein 35; Lrr; Lrrc35; tubulin-specific chaperone cofactor E-like protein
RGD Orthologs
Human
Rat
Chinchilla
Dog
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,323,612 - 42,383,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,323,612 - 42,419,105 (-)EnsemblGRCm39 Ensembl
GRCm38942,412,316 - 42,472,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,412,316 - 42,507,809 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,220,400 - 42,280,309 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,163,312 - 42,223,221 (-)NCBIMGSCv36mm8
Celera939,660,436 - 39,721,240 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytoskeleton  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32554809  


Genomics

Comparative Map Data
Tbcel
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,323,612 - 42,383,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,323,612 - 42,419,105 (-)EnsemblGRCm39 Ensembl
GRCm38942,412,316 - 42,472,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,412,316 - 42,507,809 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,220,400 - 42,280,309 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,163,312 - 42,223,221 (-)NCBIMGSCv36mm8
Celera939,660,436 - 39,721,240 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.71NCBI
TBCEL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811121,024,102 - 121,090,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11121,024,072 - 121,090,776 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,894,811 - 120,961,485 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611120,400,040 - 120,463,333 (+)NCBINCBI36Build 36hg18NCBI36
Celera11118,054,255 - 118,119,808 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,834,886 - 116,900,437 (+)NCBIHuRef
CHM1_111120,782,217 - 120,847,771 (+)NCBICHM1_1
T2T-CHM13v2.011121,047,848 - 121,114,522 (+)NCBIT2T-CHM13v2.0
Tbcel
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8851,692,660 - 51,751,560 (-)NCBIGRCr8
mRatBN7.2842,795,648 - 42,854,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl842,796,730 - 42,854,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,293,276 - 48,348,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0846,571,951 - 46,627,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,439,545 - 44,495,219 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0846,691,488 - 46,750,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl846,694,561 - 46,750,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,165,667 - 45,224,997 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,403,536 - 45,459,207 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,412,302 - 45,467,973 (-)NCBI
Celera842,392,239 - 42,447,663 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tbcel
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541221,968,964 - 22,045,813 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541221,969,521 - 22,044,348 (+)NCBIChiLan1.0ChiLan1.0
TBCEL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1512,963,356 - 13,035,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl512,964,523 - 13,035,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
Tbcel
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248804,136,804 - 4,213,713 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248804,135,653 - 4,213,968 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbcel
2055 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4297
Count of miRNA genes:757
Interacting mature miRNAs:1012
Transcripts:ENSMUST00000066148, ENSMUST00000066179, ENSMUST00000125995, ENSMUST00000128959, ENSMUST00000134374, ENSMUST00000138506, ENSMUST00000142775
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB841465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000066148   ⟹   ENSMUSP00000067882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,323,612 - 42,383,554 (-)Ensembl
GRCm38.p6 Ensembl942,412,316 - 42,472,258 (-)Ensembl
RefSeq Acc Id: ENSMUST00000066179   ⟹   ENSMUSP00000065125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,324,714 - 42,372,757 (-)Ensembl
GRCm38.p6 Ensembl942,413,418 - 42,461,461 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125995   ⟹   ENSMUSP00000114721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,323,612 - 42,368,895 (-)Ensembl
GRCm38.p6 Ensembl942,412,316 - 42,457,599 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128959   ⟹   ENSMUSP00000121164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,327,085 - 42,383,514 (-)Ensembl
GRCm38.p6 Ensembl942,415,789 - 42,472,218 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134374   ⟹   ENSMUSP00000114275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,361,288 - 42,419,105 (-)Ensembl
GRCm38.p6 Ensembl942,449,992 - 42,507,809 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138506   ⟹   ENSMUSP00000116616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,326,971 - 42,383,561 (-)Ensembl
GRCm38.p6 Ensembl942,415,675 - 42,472,265 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,325,286 - 42,339,534 (-)Ensembl
GRCm38.p6 Ensembl942,413,990 - 42,428,238 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,380,387 - 42,383,535 (-)Ensembl
GRCm38.p6 Ensembl942,469,091 - 42,472,239 (-)Ensembl
RefSeq Acc Id: NM_001357656   ⟹   NP_001344585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,323,612 - 42,372,724 (-)NCBI
GRCm38942,412,316 - 42,461,428 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357657   ⟹   NP_001344586
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,323,612 - 42,368,896 (-)NCBI
GRCm38942,412,316 - 42,457,600 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378604   ⟹   NP_001365533
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,323,612 - 42,383,534 (-)NCBI
GRCm38942,412,316 - 42,472,238 (-)NCBI
Sequence:
RefSeq Acc Id: NM_173038   ⟹   NP_766626
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,323,612 - 42,383,534 (-)NCBI
GRCm38942,412,316 - 42,472,238 (-)NCBI
MGSCv37942,220,400 - 42,280,309 (-)RGD
Celera939,660,436 - 39,721,240 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510396   ⟹   XP_006510459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,323,612 - 42,372,941 (-)NCBI
GRCm38942,412,316 - 42,461,666 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766626   ⟸   NM_173038
- Peptide Label: isoform b
- UniProtKB: B9EID8 (UniProtKB/Swiss-Prot),   Q8C7A5 (UniProtKB/Swiss-Prot),   Q8C5W3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510459   ⟸   XM_006510396
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001344585   ⟸   NM_001357656
- Peptide Label: isoform b
- UniProtKB: Q8C5W3 (UniProtKB/Swiss-Prot),   B9EID8 (UniProtKB/Swiss-Prot),   Q8C7A5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001344586   ⟸   NM_001357657
- Peptide Label: isoform b
- UniProtKB: Q8C5W3 (UniProtKB/Swiss-Prot),   B9EID8 (UniProtKB/Swiss-Prot),   Q8C7A5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365533   ⟸   NM_001378604
- Peptide Label: isoform c
RefSeq Acc Id: ENSMUSP00000114721   ⟸   ENSMUST00000125995
RefSeq Acc Id: ENSMUSP00000067882   ⟸   ENSMUST00000066148
RefSeq Acc Id: ENSMUSP00000065125   ⟸   ENSMUST00000066179
RefSeq Acc Id: ENSMUSP00000116616   ⟸   ENSMUST00000138506
RefSeq Acc Id: ENSMUSP00000114275   ⟸   ENSMUST00000134374
RefSeq Acc Id: ENSMUSP00000121164   ⟸   ENSMUST00000128959
Protein Domains
LRRCT   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C5W3-F1-model_v2 AlphaFold Q8C5W3 1-424 view protein structure

Promoters
RGD ID:6845230
Promoter ID:MM_KWN:57046
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Liver,   Lung,   Spleen
Transcripts:UC009PAV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36942,236,206 - 42,236,706 (-)MPROMDB
RGD ID:6845229
Promoter ID:MM_KWN:57047
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000084520
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36942,265,559 - 42,266,059 (-)MPROMDB
RGD ID:6845231
Promoter ID:MM_KWN:57048
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung
Transcripts:UC009PAX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36942,269,626 - 42,270,126 (-)MPROMDB
RGD ID:6845227
Promoter ID:MM_KWN:57049
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung
Transcripts:OTTMUST00000084516,   OTTMUST00000084517,   OTTMUST00000084518
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36942,279,904 - 42,280,404 (-)MPROMDB
RGD ID:8669324
Promoter ID:EPDNEW_M12693
Type:multiple initiation site
Name:Tbcel_2
Description:Mus musculus tubulin folding cofactor E-like , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12694  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38942,457,600 - 42,457,660EPDNEW
RGD ID:8669326
Promoter ID:EPDNEW_M12694
Type:initiation region
Name:Tbcel_1
Description:Mus musculus tubulin folding cofactor E-like , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12693  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38942,472,238 - 42,472,298EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925543 AgrOrtholog
Ensembl Genes ENSMUSG00000037287 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066148 ENTREZGENE
  ENSMUST00000066148.12 UniProtKB/Swiss-Prot
  ENSMUST00000066179 ENTREZGENE
  ENSMUST00000066179.14 UniProtKB/Swiss-Prot
  ENSMUST00000125995 ENTREZGENE
  ENSMUST00000125995.8 UniProtKB/Swiss-Prot
  ENSMUST00000128959.8 UniProtKB/Swiss-Prot
  ENSMUST00000134374.2 UniProtKB/TrEMBL
  ENSMUST00000138506.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
InterPro LRR_dom_sf UniProtKB/Swiss-Prot
  TBCE UniProtKB/Swiss-Prot
  TBCEL_Ubl UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report mmu:272589 UniProtKB/Swiss-Prot
MGD MGI:1925543 ENTREZGENE
NCBI Gene 272589 ENTREZGENE
PANTHER PTHR15140 UniProtKB/Swiss-Prot
  TUBULIN-SPECIFIC CHAPERONE COFACTOR E-LIKE PROTEIN UniProtKB/Swiss-Prot
Pfam LRR_9 UniProtKB/Swiss-Prot
  Ubiquitin_2 UniProtKB/Swiss-Prot
PhenoGen Tbcel PhenoGen
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt B9EID8 ENTREZGENE
  D3YVP4_MOUSE UniProtKB/TrEMBL
  Q3U524_MOUSE UniProtKB/TrEMBL
  Q8C5W3 ENTREZGENE
  Q8C7A5 ENTREZGENE
  TBCEL_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B9EID8 UniProtKB/Swiss-Prot
  Q8C7A5 UniProtKB/Swiss-Prot