Brip1 (BRCA1 interacting protein C-terminal helicase 1) - Rat Genome Database

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Gene: Brip1 (BRCA1 interacting protein C-terminal helicase 1) Mus musculus
Analyze
Symbol: Brip1
Name: BRCA1 interacting protein C-terminal helicase 1
RGD ID: 1550783
MGI Page MGI
Description: Predicted to enable 5'-3' DNA helicase activity and chromatin binding activity. Acts upstream of or within reciprocal meiotic recombination; seminiferous tubule development; and spermatogenesis. Predicted to be located in cytoplasm; nuclear membrane; and nucleoplasm. Predicted to be active in nucleus. Is expressed in brain ventricular layer; cochlea; and rest of cerebellum marginal layer. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group J; breast cancer; colorectal cancer; and thrombocytopenia. Orthologous to human BRIP1 (BRCA1 interacting helicase 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 3110009N10Rik; 8030460J03Rik; ATP-dependent RNA helicase BRIP1; BACH; Bach1; BRCA1-associated C-terminal helicase 1; BRCA1-interacting protein 1; BRCA1-interacting protein C-terminal helicase 1; FACJ; Fancj; Fanconi anemia group J protein homolog; OF
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,948,957 - 86,092,041 (-)NCBIGRCm39mm39
GRCm39 Ensembl1185,948,964 - 86,092,019 (-)Ensembl
GRCm381186,058,136 - 86,201,215 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,058,138 - 86,201,193 (-)EnsemblGRCm38mm10GRCm38
MGSCv371185,871,640 - 86,014,695 (-)NCBIGRCm37mm9NCBIm37
MGSCv361185,874,331 - 86,017,388 (-)NCBImm8
Celera1195,685,510 - 95,821,501 (-)NCBICelera
Cytogenetic Map11CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. Balacescu O, etal., BMC Cancer. 2014 Apr 8;14:246. doi: 10.1186/1471-2407-14-246.
2. Barroso E, etal., Breast Cancer Res Treat. 2009 Dec;118(3):655-60. doi: 10.1007/s10549-009-0439-5. Epub 2009 Jun 18.
3. Cantor SB, etal., Cell. 2001 Apr 6;105(1):149-60.
4. Cao AY, etal., Breast Cancer Res Treat. 2009 May;115(1):51-5. doi: 10.1007/s10549-008-0052-z. Epub 2008 May 16.
5. Di Domenico F, etal., J Alzheimers Dis. 2015;44(4):1107-20. doi: 10.3233/JAD-141254.
6. Eelen G, etal., Oncogene. 2008 Jul 10;27(30):4233-41. doi: 10.1038/onc.2008.51. Epub 2008 Mar 17.
7. Esteban-Jurado C, etal., Eur J Hum Genet. 2016 May 11. doi: 10.1038/ejhg.2016.44.
8. Ghazwani Y, etal., Cancer Genet. 2016 Apr;209(4):171-6. doi: 10.1016/j.cancergen.2016.02.003. Epub 2016 Feb 15.
9. Kassovska-Bratinova S, etal., Pediatr Res. 2009 Feb;65(2):145-9. doi: 10.1203/PDR.0b013e318191eedc.
10. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
11. Levitus M, etal., Nat Genet. 2005 Sep;37(9):934-5. Epub 2005 Aug 21.
12. Liang Y, etal., J Biol Chem. 2012 Sep 28;287(40):33533-44. Epub 2012 Aug 8.
13. MGD data from the GO Consortium
14. Nakanishi R, etal., Ann Surg Oncol. 2012 Oct;19(11):3627-35. doi: 10.1245/s10434-012-2349-8. Epub 2012 Apr 12.
15. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
16. OMIM Disease Annotation Pipeline
17. RGD automated import pipeline
18. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. RGD automated import pipeline for gene-chemical interactions
20. Seal S, etal., Nat Genet. 2006 Nov;38(11):1239-41. Epub 2006 Oct 8.
21. Song H, etal., PLoS One. 2007 Mar 7;2(3):e268.
22. Tang LL, etal., Cancer Epidemiol. 2013 Jun;37(3):311-7. doi: 10.1016/j.canep.2012.12.010. Epub 2013 Jan 26.
23. Tanioka N, etal., Biomed Rep. 2014 May;2(3):359-363. Epub 2014 Feb 7.
24. Toki T, etal., Blood. 2005 Apr 15;105(8):3100-8. Epub 2004 Dec 21.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11595410   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:20059953  
PMID:20122882   PMID:20211142   PMID:21267068   PMID:21873635   PMID:24966277   PMID:26490168   PMID:26637282   PMID:30305733  


Genomics

Comparative Map Data
Brip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,948,957 - 86,092,041 (-)NCBIGRCm39mm39
GRCm39 Ensembl1185,948,964 - 86,092,019 (-)Ensembl
GRCm381186,058,136 - 86,201,215 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,058,138 - 86,201,193 (-)EnsemblGRCm38mm10GRCm38
MGSCv371185,871,640 - 86,014,695 (-)NCBIGRCm37mm9NCBIm37
MGSCv361185,874,331 - 86,017,388 (-)NCBImm8
Celera1195,685,510 - 95,821,501 (-)NCBICelera
Cytogenetic Map11CNCBI
BRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1761,679,139 - 61,863,559 (-)EnsemblGRCh38hg38GRCh38
GRCh381761,679,139 - 61,864,120 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371759,756,500 - 59,940,889 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361757,114,767 - 57,295,537 (-)NCBINCBI36hg18NCBI36
Build 341757,114,766 - 57,295,537NCBI
Celera1758,857,566 - 59,042,100 (-)NCBI
Cytogenetic Map17q23.2NCBI
HuRef1755,122,899 - 55,306,703 (-)NCBIHuRef
CHM1_11759,821,037 - 60,005,473 (-)NCBICHM1_1
Brip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21070,907,266 - 71,031,502 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1070,907,371 - 71,030,324 (-)Ensembl
Rnor_6.01073,507,009 - 73,632,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,507,100 - 73,629,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,408,318 - 73,533,317 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41074,313,004 - 74,436,532 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11074,327,690 - 74,448,583 (-)NCBI
Celera1069,829,617 - 69,953,629 (-)NCBICelera
Cytogenetic Map10q26NCBI
Brip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554512,707,793 - 2,818,592 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554512,705,834 - 2,820,610 (-)NCBIChiLan1.0ChiLan1.0
BRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11760,901,073 - 61,083,462 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1760,901,073 - 61,083,462 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01755,786,568 - 55,973,366 (-)NCBIMhudiblu_PPA_v0panPan3
BRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1934,804,285 - 34,984,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl934,806,535 - 34,983,788 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha934,033,470 - 34,213,752 (+)NCBI
ROS_Cfam_1.0935,614,312 - 35,794,767 (+)NCBI
UMICH_Zoey_3.1934,396,970 - 34,580,604 (+)NCBI
UNSW_CanFamBas_1.0934,682,046 - 34,865,676 (+)NCBI
UU_Cfam_GSD_1.0934,768,817 - 34,949,171 (+)NCBI
Brip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560233,935,468 - 34,073,645 (+)NCBI
SpeTri2.0NW_0049364903,001,445 - 3,139,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,443,697 - 36,634,088 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,498,138 - 36,639,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,871,343 - 37,957,493 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11632,909,226 - 33,085,551 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1632,910,693 - 33,082,587 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660773,666,211 - 3,849,859 (-)NCBIVero_WHO_p1.0
Brip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248712,051,044 - 2,195,364 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D11Fpm28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381186,117,092 - 86,117,310UniSTSGRCm38
MGSCv371185,930,594 - 85,930,812UniSTSGRCm37
Celera1195,744,476 - 95,744,692UniSTS
Cytogenetic Map11CUniSTS
D11Fpm31  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381186,153,311 - 86,153,593UniSTSGRCm38
MGSCv371185,966,813 - 85,967,095UniSTSGRCm37
Celera1195,780,710 - 95,780,992UniSTS
Cytogenetic Map11CUniSTS
D11Fpm32  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381186,161,597 - 86,161,841UniSTSGRCm38
MGSCv371185,975,099 - 85,975,343UniSTSGRCm37
Celera1195,788,999 - 95,789,243UniSTS
Cytogenetic Map11CUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1081
Count of miRNA genes:643
Interacting mature miRNAs:773
Transcripts:ENSMUST00000044423, ENSMUST00000123366, ENSMUST00000149748
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02167506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ240209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044423   ⟹   ENSMUSP00000043108
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,948,964 - 86,092,019 (-)Ensembl
GRCm38.p6 Ensembl1186,058,138 - 86,201,193 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123366
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1186,086,525 - 86,091,992 (-)Ensembl
GRCm38.p6 Ensembl1186,195,699 - 86,201,166 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1186,085,859 - 86,091,990 (-)Ensembl
GRCm38.p6 Ensembl1186,195,033 - 86,201,164 (-)Ensembl
RefSeq Acc Id: NM_178309   ⟹   NP_840094
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,948,962 - 86,092,019 (-)NCBI
GRCm381186,058,136 - 86,201,193 (-)NCBI
MGSCv371185,871,640 - 86,014,695 (-)RGD
Celera1195,685,508 - 95,821,501 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036156663   ⟹   XP_036012556
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,948,957 - 86,092,039 (-)NCBI
RefSeq Acc Id: XR_004936951
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,948,957 - 86,092,041 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_840094   ⟸   NM_178309
- UniProtKB: Q5SXJ3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000043108   ⟸   ENSMUST00000044423
RefSeq Acc Id: XP_036012556   ⟸   XM_036156663
- Peptide Label: isoform X1
Protein Domains
Helicase ATP-binding

Promoters
RGD ID:6820191
Promoter ID:MM_KWN:9003
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000044423,   ENSMUST00000064301,   ENSMUST00000100673,   LINCRNA_176,   OTTMUST00000002346,   OTTMUST00000002347,   OTTMUST00000002420,   UC007KSH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361186,014,561 - 86,015,142 (+)MPROMDB
RGD ID:8676004
Promoter ID:EPDNEW_M16033
Type:initiation region
Name:Brip1_1
Description:Mus musculus BRCA1 interacting protein C-terminal helicase 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381186,201,193 - 86,201,253EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442836 AgrOrtholog
Ensembl Genes ENSMUSG00000034329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000043108 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044423 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATP-dep_Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helic_SF1/SF2_ATP-bd_DinG/Rad3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase-like_DEXD_c2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rad3/Chl1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:237911 UniProtKB/Swiss-Prot
MGD MGI:2442836 ENTREZGENE
NCBI Gene 237911 ENTREZGENE
Pfam DEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Brip1 PhenoGen
PROSITE HELICASE_ATP_BIND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEXDc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs rad3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt FANCJ_MOUSE UniProtKB/Swiss-Prot
  Q3TE55_MOUSE UniProtKB/TrEMBL
  Q3TER9_MOUSE UniProtKB/TrEMBL
  Q3V3D4_MOUSE UniProtKB/TrEMBL
  Q5SXJ3 ENTREZGENE
  Q8C1K4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UL47 UniProtKB/TrEMBL
  Q8BJQ8 UniProtKB/Swiss-Prot
  Q8BKI6 UniProtKB/Swiss-Prot