Slc5a12 (solute carrier family 5 (sodium/glucose cotransporter), member 12) - Rat Genome Database

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Gene: Slc5a12 (solute carrier family 5 (sodium/glucose cotransporter), member 12) Mus musculus
Analyze
Symbol: Slc5a12
Name: solute carrier family 5 (sodium/glucose cotransporter), member 12
RGD ID: 1550723
MGI Page MGI
Description: Enables lactate transmembrane transporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within monoatomic ion transport. Predicted to be located in apical plasma membrane and nucleoplasm. Is expressed in cortical early proximal tubule and renal proximal tubule. Orthologous to human SLC5A12 (solute carrier family 5 member 12).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI315119; D630015G19; electroneutral sodium monocarboxylate cotransporter; low-affinity sodium-lactate cotransporter; SMCT; SMCT2; sodium solute cotransporter; sodium-coupled monocarboxylate transporter 2; solute carrier family 5 member 12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392110,427,644 - 110,479,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2110,427,643 - 110,478,124 (+)EnsemblGRCm39 Ensembl
GRCm382110,597,299 - 110,649,345 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2110,597,298 - 110,647,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv372110,437,456 - 110,489,502 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362110,398,138 - 110,448,608 (+)NCBIMGSCv36mm8
Celera2111,749,965 - 111,802,444 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:16104846   PMID:16141072   PMID:16141073   PMID:16873376   PMID:17591909   PMID:17692818  
PMID:19474196   PMID:20392797   PMID:20834181   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22123132   PMID:22837474   PMID:31708446   PMID:33197428  


Genomics

Comparative Map Data
Slc5a12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392110,427,644 - 110,479,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2110,427,643 - 110,478,124 (+)EnsemblGRCm39 Ensembl
GRCm382110,597,299 - 110,649,345 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2110,597,298 - 110,647,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv372110,437,456 - 110,489,502 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362110,398,138 - 110,448,608 (+)NCBIMGSCv36mm8
Celera2111,749,965 - 111,802,444 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.75NCBI
SLC5A12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381126,667,020 - 26,723,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1126,667,020 - 26,723,427 (-)EnsemblGRCh38hg38GRCh38
GRCh371126,688,567 - 26,743,607 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361126,645,142 - 26,700,150 (-)NCBINCBI36Build 36hg18NCBI36
Build 341126,669,782 - 26,700,122NCBI
Celera1126,833,841 - 26,888,871 (-)NCBICelera
Cytogenetic Map11p14.2NCBI
HuRef1126,385,425 - 26,440,958 (-)NCBIHuRef
CHM1_11126,687,583 - 26,742,609 (-)NCBICHM1_1
T2T-CHM13v2.01126,807,576 - 26,862,868 (-)NCBIT2T-CHM13v2.0
Slc5a12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83117,633,885 - 117,683,966 (+)NCBIGRCr8
mRatBN7.2397,179,326 - 97,228,405 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl397,179,326 - 97,228,405 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3100,742,674 - 100,791,707 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03109,341,629 - 109,390,668 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03107,101,946 - 107,151,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03101,791,336 - 101,833,044 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3101,791,337 - 101,833,044 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03108,389,337 - 108,430,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4396,062,388 - 96,113,699 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1395,783,207 - 96,008,322 (+)NCBI
Celera396,188,164 - 96,237,031 (+)NCBICelera
Cytogenetic Map3q34NCBI
Slc5a12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554766,067,657 - 6,117,983 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554766,067,657 - 6,117,983 (-)NCBIChiLan1.0ChiLan1.0
SLC5A12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2928,864,215 - 28,924,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11128,865,515 - 28,925,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,622,944 - 26,678,556 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,523,964 - 26,579,529 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,523,964 - 26,579,529 (-)Ensemblpanpan1.1panPan2
SLC5A12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12147,421,535 - 47,466,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2147,421,537 - 47,467,269 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2146,912,313 - 46,957,408 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02148,561,509 - 48,606,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2148,561,512 - 48,607,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12147,548,287 - 47,593,269 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02147,715,031 - 47,760,140 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02148,301,176 - 48,346,435 (-)NCBIUU_Cfam_GSD_1.0
Slc5a12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494737,223,650 - 37,277,076 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365406,378,435 - 6,430,582 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365406,378,695 - 6,430,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl233,561,008 - 33,613,549 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1233,560,988 - 33,613,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2236,165,364 - 36,217,715 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC5A12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1138,364,901 - 38,418,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl138,364,894 - 38,416,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038135,684,893 - 135,736,457 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc5a12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476616,612,086 - 16,668,038 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476616,608,454 - 16,667,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc5a12
1372 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1101
Count of miRNA genes:421
Interacting mature miRNAs:503
Transcripts:ENSMUST00000045972, ENSMUST00000111026, ENSMUST00000127822, ENSMUST00000138497, ENSMUST00000146664
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse

Markers in Region
RH127605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382110,648,674 - 110,648,841UniSTSGRCm38
MGSCv372110,488,831 - 110,488,998UniSTSGRCm37
Celera2111,801,811 - 111,801,978UniSTS
Cytogenetic Map2E3UniSTS
AI315119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382110,647,487 - 110,647,646UniSTSGRCm38
MGSCv372110,487,644 - 110,487,803UniSTSGRCm37
Celera2111,800,624 - 111,800,783UniSTS
Cytogenetic Map2E3UniSTS
Whitehead/MRC_RH21437.95UniSTS
AI481121  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382110,649,068 - 110,649,343UniSTSGRCm38
MGSCv372110,489,225 - 110,489,500UniSTSGRCm37
Cytogenetic Map2E3UniSTS
Whitehead/MRC_RH21440.35UniSTS
Slc5a12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E3UniSTS
cM Map256.75UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF529222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY964639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX005257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000045972   ⟹   ENSMUSP00000047340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,427,643 - 110,478,114 (+)Ensembl
GRCm38.p6 Ensembl2110,597,298 - 110,647,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111026   ⟹   ENSMUSP00000106655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,427,652 - 110,478,124 (+)Ensembl
GRCm38.p6 Ensembl2110,597,307 - 110,647,779 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,428,069 - 110,436,134 (+)Ensembl
GRCm38.p6 Ensembl2110,597,724 - 110,605,789 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,427,764 - 110,454,784 (+)Ensembl
GRCm38.p6 Ensembl2110,597,419 - 110,624,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,436,069 - 110,476,929 (+)Ensembl
GRCm38.p6 Ensembl2110,605,724 - 110,646,584 (+)Ensembl
RefSeq Acc Id: NM_001003915   ⟹   NP_001003915
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,427,644 - 110,479,690 (+)NCBI
GRCm382110,597,299 - 110,649,345 (+)NCBI
MGSCv372110,437,456 - 110,489,502 (+)RGD
Celera2111,749,965 - 111,802,444 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177624   ⟹   NP_001171095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,427,644 - 110,479,690 (+)NCBI
GRCm382110,597,299 - 110,649,345 (+)NCBI
MGSCv372110,437,456 - 110,489,502 (+)RGD
Celera2111,749,965 - 111,802,444 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499489   ⟹   XP_006499552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,445,820 - 110,477,773 (+)NCBI
GRCm382110,615,475 - 110,647,428 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001003915   ⟸   NM_001003915
- Peptide Label: isoform 1
- UniProtKB: Q49B93 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171095   ⟸   NM_001177624
- Peptide Label: isoform 2
- UniProtKB: Q0D2G1 (UniProtKB/Swiss-Prot),   Q6A4K8 (UniProtKB/Swiss-Prot),   Q49B93 (UniProtKB/Swiss-Prot),   B9EJ03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499552   ⟸   XM_006499489
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000106655   ⟸   ENSMUST00000111026
RefSeq Acc Id: ENSMUSP00000047340   ⟸   ENSMUST00000045972

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q49B93-F1-model_v2 AlphaFold Q49B93 1-619 view protein structure

Promoters
RGD ID:6832770
Promoter ID:MM_KWN:30972
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_001003915,   OTTMUST00000035902,   OTTMUST00000035903,   UC008LMX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362110,437,271 - 110,437,771 (+)MPROMDB
RGD ID:6832773
Promoter ID:MM_KWN:30973
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000035901
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362110,445,121 - 110,445,722 (+)MPROMDB
RGD ID:6878192
Promoter ID:EPDNEW_M2547
Type:initiation region
Name:Slc5a12_1
Description:Mus musculus solute carrier family 5 (sodium/glucose cotransporter),member 12 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382110,597,307 - 110,597,367EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2138890 AgrOrtholog
Ensembl Genes ENSMUSG00000041644 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045972 ENTREZGENE
  ENSMUST00000045972.13 UniProtKB/Swiss-Prot
  ENSMUST00000111026 ENTREZGENE
  ENSMUST00000111026.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1730.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Na/Glc_symporter_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/solute_symporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMCT2_SLC5sbd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:241612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2138890 ENTREZGENE
NCBI Gene 241612 ENTREZGENE
PANTHER SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc5a12 PhenoGen
PROSITE NA_SOLUT_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EJ03 ENTREZGENE, UniProtKB/TrEMBL
  Q0D2G1 ENTREZGENE
  Q3UNW0_MOUSE UniProtKB/TrEMBL
  Q49B93 ENTREZGENE
  Q6A4K8 ENTREZGENE
  SC5AC_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q0D2G1 UniProtKB/Swiss-Prot
  Q6A4K8 UniProtKB/Swiss-Prot