Clk1 (CDC-like kinase 1) - Rat Genome Database

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Gene: Clk1 (CDC-like kinase 1) Mus musculus
Analyze
Symbol: Clk1
Name: CDC-like kinase 1
RGD ID: 1550637
MGI Page MGI
Description: Enables protein serine/threonine kinase activity and protein tyrosine kinase activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within phosphorylation. Located in nucleus. Is expressed in several structures, including central nervous system; genitourinary system; liver; neural retina; and thyroid gland. Orthologous to human CLK1 (CDC like kinase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Clk; dual specificity protein kinase CLK1; protein kinase STY; ST; STY
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,451,147 - 58,463,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,449,348 - 58,463,225 (-)EnsemblGRCm39 Ensembl
GRCm38158,411,988 - 58,424,088 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,410,189 - 58,424,066 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,468,832 - 58,480,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,356,546 - 58,368,550 (-)NCBIMGSCv36mm8
Celera158,930,355 - 58,942,397 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-D  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-iodotubercidin  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
carbonyl sulfide  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
elesclomol  (ISO)
epoxiconazole  (EXP)
fluoranthene  (EXP)
flusilazole  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
hexaconazole  (EXP)
indirubin  (ISO)
indometacin  (ISO)
ketamine  (ISO)
leflunomide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
mono(2-ethyl-5-oxohexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-acetylsphingosine  (EXP)
nickel dichloride  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraoxon  (EXP)
patulin  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium nitrate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triadimefon  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
tungsten  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IDA)

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Characterization and comparison of four serine- and arginine-rich (SR) protein kinases. Nayler O, etal., Biochem J 1997 Sep 15;326 ( Pt 3):693-700.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. A new self-attenuated therapeutic influenza vaccine that uses host cell-restricted attenuation by artificial microRNAs. Wen K, etal., Int J Pharm. 2022 Jan 25;612:121325. doi: 10.1016/j.ijpharm.2021.121325. Epub 2021 Dec 6.
Additional References at PubMed
PMID:1825055   PMID:1986248   PMID:7665564   PMID:7671812   PMID:7990150   PMID:8617202   PMID:8798720   PMID:10349636   PMID:10480872   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:12477932   PMID:12520002   PMID:12819125   PMID:12904583   PMID:14610273   PMID:15226823   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18284575   PMID:18799693  
PMID:19116344   PMID:20923139   PMID:21677750   PMID:21873635   PMID:21949414   PMID:22465812   PMID:23308182   PMID:24869919   PMID:25106098   PMID:27177310   PMID:27769915   PMID:30973865  
PMID:31176694   PMID:32325033   PMID:33230114   PMID:34995116   PMID:35012549  


Genomics

Comparative Map Data
Clk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,451,147 - 58,463,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,449,348 - 58,463,225 (-)EnsemblGRCm39 Ensembl
GRCm38158,411,988 - 58,424,088 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,410,189 - 58,424,066 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,468,832 - 58,480,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,356,546 - 58,368,550 (-)NCBIMGSCv36mm8
Celera158,930,355 - 58,942,397 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.09NCBI
CLK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,853,009 - 200,864,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,853,009 - 200,864,691 (-)EnsemblGRCh38hg38GRCh38
GRCh372201,717,732 - 201,729,381 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,425,978 - 201,437,667 (-)NCBINCBI36Build 36hg18NCBI36
Build 342201,543,310 - 201,554,866NCBI
Celera2195,472,364 - 195,484,097 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,569,145 - 193,580,882 (-)NCBIHuRef
CHM1_12201,723,725 - 201,735,444 (-)NCBICHM1_1
T2T-CHM13v2.02201,336,455 - 201,348,106 (-)NCBIT2T-CHM13v2.0
Clk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,441,962 - 67,453,180 (-)NCBIGRCr8
mRatBN7.2959,947,774 - 59,959,002 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,947,764 - 59,957,000 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,441,063 - 68,452,488 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,556,993 - 73,568,418 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,875,067 - 71,886,492 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,296,777 - 65,308,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,296,778 - 65,307,995 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0965,104,068 - 65,115,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4957,070,825 - 57,082,043 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1957,217,806 - 57,229,025 (-)NCBI
Celera957,390,465 - 57,401,657 (-)NCBICelera
Cytogenetic Map9q31NCBI
Clk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403656,767 - 666,463 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955403655,808 - 665,007 (+)NCBIChiLan1.0ChiLan1.0
CLK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,478,214 - 103,489,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,493,141 - 103,504,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B88,108,885 - 88,120,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B206,267,364 - 206,279,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,267,364 - 206,278,942 (-)Ensemblpanpan1.1panPan2
CLK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,054,230 - 10,065,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,054,237 - 10,082,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,939,413 - 10,950,595 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0379,959,636 - 9,970,824 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,959,640 - 9,970,975 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,941,131 - 9,952,316 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,918,982 - 9,930,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,912,864 - 9,924,054 (-)NCBIUU_Cfam_GSD_1.0
Clk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,200,477 - 158,208,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726170,458 - 179,545 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936726170,763 - 178,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,553,430 - 104,562,171 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,553,512 - 104,562,348 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,713,454 - 115,722,084 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,508,513 - 86,520,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040112,897,742 - 112,908,935 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624889302,124 - 311,101 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624889301,304 - 309,591 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clk1
369 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1320
Count of miRNA genes:533
Interacting mature miRNAs:627
Transcripts:ENSMUST00000034868, ENSMUST00000123580, ENSMUST00000129303, ENSMUST00000129577, ENSMUST00000131051, ENSMUST00000135380, ENSMUST00000139787, ENSMUST00000141570, ENSMUST00000147258, ENSMUST00000148330, ENSMUST00000151338, ENSMUST00000156931
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5772827662946882Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
U11054  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,416,746 - 58,416,857UniSTSGRCm38
MGSCv37158,473,590 - 58,473,701UniSTSGRCm37
Celera158,935,116 - 58,935,227UniSTS
Cytogenetic Map1C1.3UniSTS
Whitehead_YAC1 UniSTS
RH125351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,414,930 - 58,415,103UniSTSGRCm38
MGSCv37158,471,774 - 58,471,947UniSTSGRCm37
Celera158,933,297 - 58,933,470UniSTS
Cytogenetic Map1C1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_027853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_027854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA267385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY784955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L29221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M38381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U21209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034868   ⟹   ENSMUSP00000034868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,455,924 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,416,765 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,475 - 58,452,984 (-)Ensembl
GRCm38.p6 Ensembl158,412,316 - 58,413,825 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,455,302 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,416,143 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,456,069 - 58,456,585 (-)Ensembl
GRCm38.p6 Ensembl158,416,910 - 58,417,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,453,774 - 58,460,417 (-)Ensembl
GRCm38.p6 Ensembl158,414,615 - 58,421,258 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,452,020 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,412,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,452,596 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,413,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,460,785 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,421,626 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148330   ⟹   ENSMUSP00000137649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151338   ⟹   ENSMUSP00000137815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,451,159 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,412,000 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,449,348 - 58,463,225 (-)Ensembl
GRCm38.p6 Ensembl158,410,189 - 58,424,066 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,453,749 - 58,459,557 (-)Ensembl
GRCm38.p6 Ensembl158,414,590 - 58,420,398 (-)Ensembl
RefSeq Acc Id: NM_001042634   ⟹   NP_001036099
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,451,147 - 58,463,247 (-)NCBI
GRCm38158,411,988 - 58,424,088 (-)ENTREZGENE
MGSCv37158,468,832 - 58,480,932 (-)RGD
Celera158,930,355 - 58,942,397 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027853
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,451,147 - 58,463,247 (-)NCBI
GRCm38158,411,988 - 58,424,088 (-)ENTREZGENE
MGSCv37158,468,832 - 58,480,932 (-)RGD
Celera158,930,355 - 58,942,397 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027854
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,451,147 - 58,463,247 (-)NCBI
GRCm38158,411,988 - 58,424,088 (-)ENTREZGENE
MGSCv37158,468,832 - 58,480,932 (-)RGD
Celera158,930,355 - 58,942,397 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001036099   ⟸   NM_001042634
- UniProtKB: A6H6K2 (UniProtKB/Swiss-Prot),   Q3UXB6 (UniProtKB/Swiss-Prot),   P22518 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034868   ⟸   ENSMUST00000034868
RefSeq Acc Id: ENSMUSP00000137815   ⟸   ENSMUST00000151338
RefSeq Acc Id: ENSMUSP00000137649   ⟸   ENSMUST00000148330
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P22518-F1-model_v2 AlphaFold P22518 1-483 view protein structure

Promoters
RGD ID:6873786
Promoter ID:EPDNEW_M344
Type:single initiation site
Name:Clk1_2
Description:Mus musculus CDC-like kinase 1 , transcript variant 3, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M345  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,422,847 - 58,422,907EPDNEW
RGD ID:6873788
Promoter ID:EPDNEW_M345
Type:initiation region
Name:Clk1_1
Description:Mus musculus CDC-like kinase 1 , transcript variant 3, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M344  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,424,022 - 58,424,082EPDNEW
RGD ID:6817519
Promoter ID:MM_KWN:824
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000051751,   OTTMUST00000051752,   OTTMUST00000051753
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,469,516 - 58,471,657 (-)MPROMDB
RGD ID:6817517
Promoter ID:MM_KWN:825
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000051748
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,473,341 - 58,473,841 (-)MPROMDB
RGD ID:6817520
Promoter ID:MM_KWN:826
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000057902
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,474,711 - 58,475,211 (-)MPROMDB
RGD ID:6817518
Promoter ID:MM_KWN:827
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000051750
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,478,051 - 58,479,092 (-)MPROMDB
RGD ID:6848549
Promoter ID:MM_TRO:193
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Kidney
Transcripts:MTR000941.1.802.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,479,981 - 58,480,481 (-)MPROMDB
RGD ID:6817516
Promoter ID:MM_KWN:828
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001042634,   NR_027853,   OTTMUST00000051744,   OTTMUST00000051745,   OTTMUST00000051747,   OTTMUST00000051749
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,480,596 - 58,481,096 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107403 AgrOrtholog
Ensembl Genes ENSMUSG00000026034 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034868 ENTREZGENE
  ENSMUST00000034868.14 UniProtKB/Swiss-Prot
  ENSMUST00000148330 ENTREZGENE
  ENSMUST00000148330.8 UniProtKB/Swiss-Prot
  ENSMUST00000151338.8 UniProtKB/Swiss-Prot
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report mmu:12747 UniProtKB/Swiss-Prot
MGD MGI:107403 ENTREZGENE
NCBI Gene 12747 ENTREZGENE
PANTHER DUAL SPECIFICITY PROTEIN KINASE CLK1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE DOA-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CLK1 RGD
PhenoGen Clk1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6H6K2 ENTREZGENE
  CLK1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UKA7_MOUSE UniProtKB/TrEMBL
  Q3UXB6 ENTREZGENE
UniProt Secondary A6H6K2 UniProtKB/Swiss-Prot
  Q3UXB6 UniProtKB/Swiss-Prot