St3gal4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4) - Rat Genome Database

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Gene: St3gal4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4) Mus musculus
Analyze
Symbol: St3gal4
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 4
RGD ID: 1550578
MGI Page MGI
Description: Enables N-acetyllactosaminide alpha-2,3-sialyltransferase activity and beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Involved in positive regulation of blood coagulation and positive regulation of leukocyte tethering or rolling. Acts upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; integumental system; and nervous system. Orthologous to human ST3GAL4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: alpha 2,3-sialyltransferase IV; alpha 2,3-ST 4; beta-galactoside alpha-2,3-sialyltransferase 4; CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4; gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase; gal-beta-1,4-GalNAc-alpha-2,3-sialyltransferase; gal-beta-1,4-GlcNAc-alpha-2,3-sialyltransferase; N-acetyllactosaminide alpha-2,3-sialyltransferase; Sia; sialyltransferase 4C (beta-galactosidase alpha-2,3-sialytransferase); sialyltransferase 4C (beta-galactoside alpha-2,3-sialytransferase); SIAT4-C; Siat4c; ST3Gal IV; ST3GalIV
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39934,957,872 - 35,028,160 (-)NCBIGRCm39mm39
GRCm39 Ensembl934,957,872 - 35,030,564 (-)Ensembl
GRCm38935,046,576 - 35,116,864 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,046,576 - 35,119,268 (-)EnsemblGRCm38mm10GRCm38
MGSCv37934,854,164 - 34,924,395 (-)NCBIGRCm37mm9NCBIm37
MGSCv36934,796,250 - 34,866,481 (-)NCBImm8
Celera932,304,334 - 32,354,128 (-)NCBICelera
Cytogenetic Map9A4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9184827   PMID:10349636   PMID:10381338   PMID:10512203   PMID:10894948   PMID:11042159   PMID:11076861   PMID:12097641   PMID:12393657   PMID:12477932   PMID:12676797   PMID:12787792  
PMID:14610273   PMID:14681479   PMID:15466624   PMID:15489334   PMID:15840001   PMID:16099875   PMID:16141072   PMID:16141073   PMID:17111351   PMID:18488037   PMID:18519646   PMID:18799693  
PMID:21098096   PMID:21267068   PMID:21873635   PMID:22613794   PMID:22700726   PMID:22735313   PMID:23118208   PMID:23471032   PMID:23678987   PMID:24101501   PMID:24425712   PMID:24625722  
PMID:25066807   PMID:25485912   PMID:25498912   PMID:25525262   PMID:25799588   PMID:26303108   PMID:32084196   PMID:32325033  


Genomics

Comparative Map Data
St3gal4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39934,957,872 - 35,028,160 (-)NCBIGRCm39mm39
GRCm39 Ensembl934,957,872 - 35,030,564 (-)Ensembl
GRCm38935,046,576 - 35,116,864 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,046,576 - 35,119,268 (-)EnsemblGRCm38mm10GRCm38
MGSCv37934,854,164 - 34,924,395 (-)NCBIGRCm37mm9NCBIm37
MGSCv36934,796,250 - 34,866,481 (-)NCBImm8
Celera932,304,334 - 32,354,128 (-)NCBICelera
Cytogenetic Map9A4NCBI
ST3GAL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11126,355,640 - 126,440,344 (+)EnsemblGRCh38hg38GRCh38
GRCh3811126,355,686 - 126,414,638 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711126,225,581 - 126,284,533 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,731,306 - 125,789,743 (+)NCBINCBI36hg18NCBI36
Build 3411125,731,305 - 125,789,741NCBI
Celera11123,391,253 - 123,450,644 (+)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11122,170,390 - 122,229,420 (+)NCBIHuRef
CHM1_111126,111,806 - 126,170,805 (+)NCBICHM1_1
St3gal4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2833,415,666 - 33,465,365 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)Ensembl
Rnor_6.0836,264,741 - 36,314,811 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,264,750 - 36,314,811 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,283,778 - 36,333,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,845,949 - 34,894,795 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1834,854,718 - 34,903,561 (-)NCBI
Celera834,834,950 - 34,883,679 (-)NCBICelera
Cytogenetic Map8q21NCBI
St3gal4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,387,039 - 27,418,770 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,376,270 - 27,418,770 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111125,079,260 - 125,137,752 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11125,079,260 - 125,141,737 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011121,169,213 - 121,228,287 (+)NCBIMhudiblu_PPA_v0panPan3
ST3GAL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,132,663 - 8,160,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,133,085 - 8,141,254 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,193,897 - 8,226,014 (-)NCBI
ROS_Cfam_1.058,088,240 - 8,120,340 (-)NCBI
UMICH_Zoey_3.158,157,943 - 8,189,985 (-)NCBI
UNSW_CanFamBas_1.058,131,956 - 8,163,714 (-)NCBI
UU_Cfam_GSD_1.058,165,827 - 8,197,913 (-)NCBI
St3gal4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,598,516 - 108,643,465 (+)NCBI
SpeTri2.0NW_0049365725,806,897 - 5,851,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,445,591 - 53,486,010 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,442,795 - 53,491,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,294,217 - 59,323,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,479,328 - 117,543,262 (+)NCBI
ChlSab1.1 Ensembl1117,480,451 - 117,542,671 (+)Ensembl
Vero_WHO_p1.0NW_0236660438,530,719 - 8,590,666 (-)NCBI
St3gal4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812503,703 - 551,907 (+)NCBI

Position Markers
PMC126621P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,054,199 - 35,054,478UniSTSGRCm38
MGSCv37934,861,784 - 34,862,063UniSTSGRCm37
Celera932,311,995 - 32,312,274UniSTS
Cytogenetic Map9A5.3UniSTS
Siat4c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,053,125 - 35,054,753UniSTSGRCm38
MGSCv37934,860,710 - 34,862,338UniSTSGRCm37
Celera932,310,922 - 32,312,549UniSTS
Cytogenetic Map9A5.3UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756137395074Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9999947243999472Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91245867446458818Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91347987947479879Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91550045549500594Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91550045549500594Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91550045549500594Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91550045549500594Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91583833149838331Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91583833149838331Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91583833149838331Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91610000050100000Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91610000050100000Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91679834550798345Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91706754451067647Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined92003211054032229Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92024206654242196Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92039490154395074Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92039490154395074Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92039490154395074Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92039490154395074Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92094144454941444Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92567618959676285Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92567618959676285Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92567618959676285Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92567618959676285Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
14700787Ncdq1_mnevus cell density QTL 1 (mouse)92820000036200000Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92859203741888030Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93050339840654618Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
4142455Elnv_mepilepsy naive (mouse)Not determined93136026237395074Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93419332342853570Mouse
1300868Tlf_mT lymphocyte fraction (mouse)Not determined93492645237395074Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:373
Count of miRNA genes:250
Interacting mature miRNAs:296
Transcripts:ENSMUST00000034537
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB061305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI385650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D28941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034537   ⟹   ENSMUSP00000034537
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,957,872 - 35,028,169 (-)Ensembl
GRCm38.p6 Ensembl935,046,576 - 35,116,873 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213526   ⟹   ENSMUSP00000150841
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,964,450 - 35,030,479 (-)Ensembl
GRCm38.p6 Ensembl935,053,154 - 35,119,183 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214526   ⟹   ENSMUSP00000149827
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,964,725 - 35,010,367 (-)Ensembl
GRCm38.p6 Ensembl935,053,429 - 35,099,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215089   ⟹   ENSMUSP00000149489
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,965,359 - 35,030,564 (-)Ensembl
GRCm38.p6 Ensembl935,054,063 - 35,119,268 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215463   ⟹   ENSMUSP00000149145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,966,036 - 34,967,090 (-)Ensembl
GRCm38.p6 Ensembl935,054,740 - 35,055,794 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215638   ⟹   ENSMUSP00000149302
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,965,768 - 34,987,657 (-)Ensembl
GRCm38.p6 Ensembl935,054,472 - 35,076,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216557   ⟹   ENSMUSP00000150775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,964,671 - 35,017,963 (-)Ensembl
GRCm38.p6 Ensembl935,053,375 - 35,106,667 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217149   ⟹   ENSMUSP00000150187
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,965,731 - 35,010,412 (-)Ensembl
GRCm38.p6 Ensembl935,054,435 - 35,099,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217542   ⟹   ENSMUSP00000150423
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl934,965,760 - 34,983,927 (-)Ensembl
GRCm38.p6 Ensembl935,054,464 - 35,072,631 (-)Ensembl
RefSeq Acc Id: NM_009178   ⟹   NP_033204
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 35,028,160 (-)NCBI
GRCm38935,046,576 - 35,116,864 (-)NCBI
MGSCv37934,854,164 - 34,924,395 (-)RGD
Celera932,304,334 - 32,354,128 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510108   ⟹   XP_006510171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 35,028,071 (-)NCBI
GRCm38935,046,576 - 35,116,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510109   ⟹   XP_006510172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 35,017,988 (-)NCBI
GRCm38935,046,576 - 35,106,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510110   ⟹   XP_006510173
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 35,017,904 (-)NCBI
GRCm38935,046,576 - 35,101,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510111   ⟹   XP_006510174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 34,986,479 (-)NCBI
GRCm38935,046,576 - 35,075,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510112   ⟹   XP_006510175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 34,988,595 (-)NCBI
GRCm38935,046,576 - 35,077,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242429   ⟹   XP_011240731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 34,988,595 (-)NCBI
GRCm38935,046,576 - 35,077,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242433   ⟹   XP_011240735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 34,987,634 (-)NCBI
GRCm38935,046,576 - 35,076,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154745   ⟹   XP_036010638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39934,957,872 - 35,028,076 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_033204   ⟸   NM_009178
- UniProtKB: Q91Y74 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510171   ⟸   XM_006510108
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006510172   ⟸   XM_006510109
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510173   ⟸   XM_006510110
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006510175   ⟸   XM_006510112
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006510174   ⟸   XM_006510111
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011240731   ⟸   XM_011242429
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011240735   ⟸   XM_011242433
- Peptide Label: isoform X1
- UniProtKB: Q91Y74 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150423   ⟸   ENSMUST00000217542
RefSeq Acc Id: ENSMUSP00000150187   ⟸   ENSMUST00000217149
RefSeq Acc Id: ENSMUSP00000150775   ⟸   ENSMUST00000216557
RefSeq Acc Id: ENSMUSP00000034537   ⟸   ENSMUST00000034537
RefSeq Acc Id: ENSMUSP00000150841   ⟸   ENSMUST00000213526
RefSeq Acc Id: ENSMUSP00000149302   ⟸   ENSMUST00000215638
RefSeq Acc Id: ENSMUSP00000149145   ⟸   ENSMUST00000215463
RefSeq Acc Id: ENSMUSP00000149489   ⟸   ENSMUST00000215089
RefSeq Acc Id: ENSMUSP00000149827   ⟸   ENSMUST00000214526
RefSeq Acc Id: XP_036010638   ⟸   XM_036154745
- Peptide Label: isoform X1

Promoters
RGD ID:6849273
Promoter ID:MM_XEF:7384
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_001003854,   NM_001095993,   NM_205826
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36934,860,506 - 34,861,006 (-)MPROMDB
RGD ID:6848481
Promoter ID:MM_ACW:50066
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:ST3GAL4.ESEP07,   ST3GAL4.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36934,906,321 - 34,906,821 (-)MPROMDB
RGD ID:6848480
Promoter ID:MM_ACW:50067
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day6,   Liver,   Lung
Transcripts:ST3GAL4.ASEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36934,913,854 - 34,914,354 (-)MPROMDB
RGD ID:6845218
Promoter ID:MM_KWN:56777
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_009178
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36934,924,291 - 34,925,347 (-)MPROMDB
RGD ID:6848478
Promoter ID:MM_ACW:50069
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ST3GAL4.CSEP07,   ST3GAL4.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36934,926,446 - 34,926,946 (-)MPROMDB
RGD ID:8669144
Promoter ID:EPDNEW_M12602
Type:initiation region
Name:St3gal4_2
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12604  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38935,099,072 - 35,099,132EPDNEW
RGD ID:8669146
Promoter ID:EPDNEW_M12604
Type:initiation region
Name:St3gal4_1
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12602  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38935,116,852 - 35,116,912EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316743 AgrOrtholog
Ensembl Genes ENSMUSG00000032038 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034537 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000149145 UniProtKB/TrEMBL
  ENSMUSP00000149302 UniProtKB/TrEMBL
  ENSMUSP00000149489 UniProtKB/TrEMBL
  ENSMUSP00000149827 UniProtKB/TrEMBL
  ENSMUSP00000150187 UniProtKB/TrEMBL
  ENSMUSP00000150423 UniProtKB/TrEMBL
  ENSMUSP00000150775 UniProtKB/TrEMBL
  ENSMUSP00000150841 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034537 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000213526 UniProtKB/TrEMBL
  ENSMUST00000214526 UniProtKB/TrEMBL
  ENSMUST00000215089 UniProtKB/TrEMBL
  ENSMUST00000215463 UniProtKB/TrEMBL
  ENSMUST00000215638 UniProtKB/TrEMBL
  ENSMUST00000216557 UniProtKB/TrEMBL
  ENSMUST00000217149 UniProtKB/TrEMBL
  ENSMUST00000217542 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20443 UniProtKB/Swiss-Prot
MGD MGI:1316743 ENTREZGENE
NCBI Gene 20443 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal4 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SQQ6_MOUSE UniProtKB/TrEMBL
  A0A1L1SR32_MOUSE UniProtKB/TrEMBL
  A0A1L1SRJ3_MOUSE UniProtKB/TrEMBL
  A0A1L1SSB1_MOUSE UniProtKB/TrEMBL
  A0A1L1ST66_MOUSE UniProtKB/TrEMBL
  A0A1L1STP4_MOUSE UniProtKB/TrEMBL
  A0A1L1SUJ7_MOUSE UniProtKB/TrEMBL
  A0A1L1SUM8_MOUSE UniProtKB/TrEMBL
  Q3V2F4_MOUSE UniProtKB/TrEMBL
  Q91Y74 ENTREZGENE
  Q921R5_MOUSE UniProtKB/TrEMBL
  Q9CVE8_MOUSE UniProtKB/TrEMBL
  SIA4C_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P97354 UniProtKB/Swiss-Prot
  Q61325 UniProtKB/Swiss-Prot