Meis1 (Meis homeobox 1) - Rat Genome Database

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Gene: Meis1 (Meis homeobox 1) Mus musculus
Analyze
Symbol: Meis1
Name: Meis homeobox 1
RGD ID: 1550525
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Involved in negative regulation of myeloid cell differentiation and positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including angiogenesis; hemopoiesis; and lens morphogenesis in camera-type eye. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb bud; and sensory organ. Orthologous to human MEIS1 (Meis homeobox 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C530044H18Rik; Evi8; homeobox protein Meis1; myeloid ecotropic viral integration site 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,830,428 - 18,968,992 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,829,817 - 18,968,985 (-)EnsemblGRCm39 Ensembl
GRCm381118,880,428 - 19,019,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,879,817 - 19,018,985 (-)EnsemblGRCm38mm10GRCm38
MGSCv371118,780,431 - 18,918,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361118,780,431 - 18,918,683 (-)NCBIMGSCv36mm8
Celera1121,034,144 - 21,171,771 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1111.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-adrenaline  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-4-oxoretinol  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP,ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chloroethene  (EXP)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
disodium selenite  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
Licochalcone B  (ISO)
malathion  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
Ptaquiloside  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
sotorasib  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trametinib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Meis1 promotes poly (rC)-binding protein 2 expression and inhibits angiotensin II-induced cardiomyocyte hypertrophy. Zhang Y, etal., IUBMB Life. 2016 Jan;68(1):13-22. doi: 10.1002/iub.1456. Epub 2015 Nov 24.
Additional References at PubMed
PMID:7565694   PMID:8563752   PMID:8950991   PMID:9049632   PMID:9315626   PMID:9343407   PMID:9405651   PMID:9525891   PMID:9799840   PMID:10082572   PMID:10349636   PMID:10373562  
PMID:10523646   PMID:10586884   PMID:10842069   PMID:10922068   PMID:11010815   PMID:11042159   PMID:11076861   PMID:11101846   PMID:11217851   PMID:11438208   PMID:11566859   PMID:11960001  
PMID:12082612   PMID:12152071   PMID:12183364   PMID:12374767   PMID:12397630   PMID:12441290   PMID:12477932   PMID:12543865   PMID:14701735   PMID:14713950   PMID:15065125   PMID:15161102  
PMID:15465489   PMID:15466398   PMID:15489334   PMID:15617687   PMID:15634706   PMID:15654074   PMID:15755900   PMID:15882575   PMID:15973411   PMID:16015334   PMID:16087734   PMID:16141072  
PMID:16141073   PMID:16193510   PMID:16469876   PMID:16495310   PMID:16507773   PMID:16602821   PMID:16648484   PMID:16778079   PMID:16847320   PMID:16888613   PMID:16919269   PMID:17049510  
PMID:17056599   PMID:17066077   PMID:17068127   PMID:17122047   PMID:17178831   PMID:17178874   PMID:17467687   PMID:17481601   PMID:17942707   PMID:18164701   PMID:18216174   PMID:18223676  
PMID:18287559   PMID:18375036   PMID:18408019   PMID:18449196   PMID:18554416   PMID:18691704   PMID:18723445   PMID:18787068   PMID:18799693   PMID:18973680   PMID:19030180   PMID:19109563  
PMID:19121383   PMID:19247936   PMID:19268698   PMID:19346496   PMID:19369396   PMID:19386638   PMID:19473990   PMID:19620287   PMID:19799567   PMID:20027618   PMID:20059953   PMID:20203303  
PMID:20211142   PMID:20237320   PMID:20412781   PMID:20413611   PMID:20503368   PMID:20541704   PMID:20573694   PMID:20711984   PMID:20739957   PMID:20808819   PMID:20826310   PMID:20826531  
PMID:20887958   PMID:20932939   PMID:21059917   PMID:21083428   PMID:21262763   PMID:21267068   PMID:21518888   PMID:21731673   PMID:21858198   PMID:21873635   PMID:21900201   PMID:21982646  
PMID:22417325   PMID:22665933   PMID:22711520   PMID:22748019   PMID:22987645   PMID:22988430   PMID:22995899   PMID:23038774   PMID:23091297   PMID:23308270   PMID:23451132   PMID:23487309  
PMID:23594737   PMID:23623500   PMID:23717575   PMID:23756022   PMID:23913823   PMID:23946446   PMID:23974041   PMID:24146773   PMID:24194600   PMID:24238961   PMID:24440154   PMID:24498346  
PMID:24578510   PMID:24594519   PMID:24642863   PMID:24809472   PMID:24952961   PMID:24958854   PMID:25013928   PMID:25363539   PMID:25516969   PMID:25640223   PMID:25740828   PMID:25758227  
PMID:25803581   PMID:25810521   PMID:25911551   PMID:26238476   PMID:26253404   PMID:26259236   PMID:26411676   PMID:26438731   PMID:26511239   PMID:26511275   PMID:26545946   PMID:26674308  
PMID:26857994   PMID:26904955   PMID:26930384   PMID:26986211   PMID:26988119   PMID:27018596   PMID:27133822   PMID:27178982   PMID:27287812   PMID:27333032   PMID:27521061   PMID:27583552  
PMID:27617578   PMID:27918583   PMID:28065741   PMID:28399410   PMID:28539333   PMID:28645892   PMID:28952437   PMID:28956216   PMID:28981617   PMID:29183737   PMID:29217774   PMID:29296870  
PMID:29317485   PMID:29449449   PMID:29449453   PMID:29592525   PMID:29596840   PMID:29712641   PMID:29719258   PMID:30190278   PMID:30220628   PMID:30233336   PMID:30355480   PMID:30377232  
PMID:30758286   PMID:30914971   PMID:30943054   PMID:31543346   PMID:32156750   PMID:32274496   PMID:32421711   PMID:32499640   PMID:32537491   PMID:32554463   PMID:32586976   PMID:32616504  
PMID:32910473   PMID:33145986   PMID:33206716   PMID:33298461   PMID:33527978   PMID:33723039   PMID:34008292   PMID:34032267   PMID:34035267   PMID:34062094   PMID:34155146   PMID:34321999  
PMID:34423345   PMID:35468619   PMID:35718449   PMID:35777912   PMID:35831953   PMID:35875660   PMID:35918150   PMID:36247013   PMID:36445780   PMID:36517672   PMID:36627077   PMID:36971701  
PMID:37272420   PMID:37500618   PMID:37823339  


Genomics

Comparative Map Data
Meis1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,830,428 - 18,968,992 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,829,817 - 18,968,985 (-)EnsemblGRCm39 Ensembl
GRCm381118,880,428 - 19,019,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,879,817 - 19,018,985 (-)EnsemblGRCm38mm10GRCm38
MGSCv371118,780,431 - 18,918,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361118,780,431 - 18,918,683 (-)NCBIMGSCv36mm8
Celera1121,034,144 - 21,171,771 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1111.11NCBI
MEIS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38266,435,125 - 66,573,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl266,433,452 - 66,573,869 (+)EnsemblGRCh38hg38GRCh38
GRCh37266,662,257 - 66,801,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36266,516,036 - 66,653,395 (+)NCBINCBI36Build 36hg18NCBI36
Build 34266,574,182 - 66,711,541NCBI
Celera266,510,942 - 66,648,316 (+)NCBICelera
Cytogenetic Map2p14NCBI
HuRef266,397,888 - 66,535,182 (+)NCBIHuRef
CHM1_1266,593,726 - 66,731,071 (+)NCBICHM1_1
T2T-CHM13v2.0266,444,205 - 66,582,943 (+)NCBIT2T-CHM13v2.0
Meis1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81497,356,949 - 97,499,646 (-)NCBIGRCr8
mRatBN7.21493,155,426 - 93,294,373 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1493,155,419 - 93,294,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1497,471,782 - 97,610,378 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01498,716,059 - 98,854,667 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01495,181,092 - 95,319,673 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014103,182,178 - 103,321,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14103,181,281 - 103,321,270 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014102,927,220 - 103,064,633 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41499,693,567 - 99,832,273 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1492,182,045 - 92,319,516 (-)NCBICelera
Cytogenetic Map14q22NCBI
Meis1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542418,058,004 - 18,190,453 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542418,060,499 - 18,190,425 (-)NCBIChiLan1.0ChiLan1.0
MEIS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21259,830,340 - 59,968,706 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A59,833,083 - 59,972,676 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A66,494,934 - 66,633,295 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A67,615,941 - 67,752,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A67,615,941 - 67,752,958 (+)Ensemblpanpan1.1panPan2
MEIS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11065,765,498 - 65,898,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1065,683,560 - 65,897,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1065,654,860 - 65,820,227 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01066,778,156 - 66,943,912 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1066,778,687 - 66,927,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11066,456,570 - 66,622,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01066,764,024 - 66,929,260 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01067,059,265 - 67,224,762 (+)NCBIUU_Cfam_GSD_1.0
Meis1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629217,354,842 - 17,491,236 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649111,079,455 - 11,217,388 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649111,079,574 - 11,216,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEIS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl375,485,022 - 75,625,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1375,485,024 - 75,625,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2379,331,016 - 79,362,238 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MEIS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11440,473,148 - 40,613,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1440,471,063 - 40,611,071 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604571,303,335 - 71,444,475 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Meis1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247626,873,913 - 7,031,346 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247626,894,332 - 7,031,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Meis1
4269 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3031
Count of miRNA genes:850
Interacting mature miRNAs:1198
Transcripts:ENSMUST00000068264, ENSMUST00000102878, ENSMUST00000118661, ENSMUST00000125722, ENSMUST00000137300, ENSMUST00000144988, ENSMUST00000177357, ENSMUST00000177417, ENSMUST00000185131
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse

Markers in Region
MEIS1_7825  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,880,510 - 18,881,294UniSTSGRCm38
MGSCv371118,780,513 - 18,781,297UniSTSGRCm37
Celera1121,034,226 - 21,035,019UniSTS
Cytogenetic Map11A3.1UniSTS
PMC343796P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381119,016,159 - 19,016,291UniSTSGRCm38
MGSCv371118,916,162 - 18,916,294UniSTSGRCm37
Celera1121,169,250 - 21,169,382UniSTS
Cytogenetic Map11A3.1UniSTS
Meis1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,881,011 - 18,881,197UniSTSGRCm38
MGSCv371118,781,014 - 18,781,200UniSTSGRCm37
Celera1121,034,726 - 21,034,922UniSTS
Cytogenetic Map11A3.1UniSTS
cM Map1111.0UniSTS
NIB1519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,880,719 - 18,880,895UniSTSGRCm38
MGSCv371118,780,722 - 18,780,898UniSTSGRCm37
Celera1121,034,434 - 21,034,610UniSTS
Cytogenetic Map11A3.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001193271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U33629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U33630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000068264   ⟹   ENSMUSP00000069277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,830,662 - 18,968,958 (-)Ensembl
GRCm38.p6 Ensembl1118,880,662 - 19,018,958 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102878   ⟹   ENSMUSP00000099942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,830,428 - 18,968,714 (-)Ensembl
GRCm38.p6 Ensembl1118,880,428 - 19,018,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,830,668 - 18,962,002 (-)Ensembl
GRCm38.p6 Ensembl1118,880,668 - 19,012,002 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,936,774 - 18,968,922 (-)Ensembl
GRCm38.p6 Ensembl1118,986,774 - 19,018,922 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,959,784 - 18,968,922 (-)Ensembl
GRCm38.p6 Ensembl1119,009,784 - 19,018,922 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144988   ⟹   ENSMUSP00000134969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,829,817 - 18,968,985 (-)Ensembl
GRCm38.p6 Ensembl1118,879,817 - 19,018,985 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177357   ⟹   ENSMUSP00000139074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,831,360 - 18,966,289 (-)Ensembl
GRCm38.p6 Ensembl1118,881,360 - 19,016,289 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177417   ⟹   ENSMUSP00000135726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,830,675 - 18,968,714 (-)Ensembl
GRCm38.p6 Ensembl1118,880,675 - 19,018,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185131   ⟹   ENSMUSP00000139219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,830,428 - 18,968,969 (-)Ensembl
GRCm38.p6 Ensembl1118,880,428 - 19,018,969 (-)Ensembl
RefSeq Acc Id: NM_001193271   ⟹   NP_001180200
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,428 - 18,968,969 (-)NCBI
GRCm381118,880,428 - 19,018,969 (-)NCBI
Celera1121,034,144 - 21,172,060 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010789   ⟹   NP_034919
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,428 - 18,968,969 (-)NCBI
GRCm381118,880,428 - 19,018,969 (-)NCBI
MGSCv371118,780,431 - 18,918,683 (-)RGD
Celera1121,034,144 - 21,172,060 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514559   ⟹   XP_006514622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,968,823 (-)NCBI
GRCm381118,880,668 - 19,019,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314312   ⟹   XP_017169801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,968,931 (-)NCBI
GRCm381118,880,668 - 19,019,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245628   ⟹   XP_030101488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,966,050 (-)NCBI
GRCm381118,880,668 - 19,015,980 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779899
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,968,992 (-)NCBI
GRCm381118,880,668 - 19,019,651 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779900
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,968,963 (-)NCBI
GRCm381118,880,668 - 19,019,651 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949337
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,830,668 - 18,968,992 (-)NCBI
GRCm381118,880,668 - 19,019,651 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034919   ⟸   NM_010789
- Peptide Label: isoform A
- UniProtKB: H3BLB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001180200   ⟸   NM_001193271
- Peptide Label: isoform B
- UniProtKB: Q60955 (UniProtKB/Swiss-Prot),   Q5SVC8 (UniProtKB/Swiss-Prot),   B1ARH5 (UniProtKB/Swiss-Prot),   Q8CIL0 (UniProtKB/Swiss-Prot),   Q60954 (UniProtKB/Swiss-Prot),   H3BLB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514622   ⟸   XM_006514559
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169801   ⟸   XM_017314312
- Peptide Label: isoform X2
- UniProtKB: H3BLB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101488   ⟸   XM_030245628
- Peptide Label: isoform X3
- UniProtKB: Q3UJ00 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000134969   ⟸   ENSMUST00000144988
RefSeq Acc Id: ENSMUSP00000139074   ⟸   ENSMUST00000177357
RefSeq Acc Id: ENSMUSP00000135726   ⟸   ENSMUST00000177417
RefSeq Acc Id: ENSMUSP00000069277   ⟸   ENSMUST00000068264
RefSeq Acc Id: ENSMUSP00000139219   ⟸   ENSMUST00000185131
RefSeq Acc Id: ENSMUSP00000099942   ⟸   ENSMUST00000102878
Protein Domains
Homeobox   MEIS N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60954-F1-model_v2 AlphaFold Q60954 1-390 view protein structure

Promoters
RGD ID:6821255
Promoter ID:MM_KWN:6543
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000102878,   OTTMUST00000011634,   OTTMUST00000011635,   UC007ICM.1,   UC007ICN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361118,918,446 - 18,919,842 (-)MPROMDB
RGD ID:8674040
Promoter ID:EPDNEW_M15049
Type:initiation region
Name:Meis1_2
Description:Mus musculus Meis homeobox 1 , transcript variant A, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15050  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381119,018,415 - 19,018,475EPDNEW
RGD ID:8674038
Promoter ID:EPDNEW_M15050
Type:initiation region
Name:Meis1_1
Description:Mus musculus Meis homeobox 1 , transcript variant A, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15049  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381119,018,966 - 19,019,026EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104717 AgrOrtholog
Ensembl Genes ENSMUSG00000020160 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068264 ENTREZGENE
  ENSMUST00000068264.14 UniProtKB/Swiss-Prot
  ENSMUST00000102878.11 UniProtKB/TrEMBL
  ENSMUST00000118661 ENTREZGENE
  ENSMUST00000144988.8 UniProtKB/Swiss-Prot
  ENSMUST00000177357.4 UniProtKB/TrEMBL
  ENSMUST00000177417.8 UniProtKB/TrEMBL
  ENSMUST00000185131 ENTREZGENE
  ENSMUST00000185131.8 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_KN_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PKNOX/Meis_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17268 UniProtKB/Swiss-Prot
MGD MGI:104717 ENTREZGENE
NCBI Gene 17268 ENTREZGENE
PANTHER HOMEOBOX PROTEIN MEIS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX PROTEIN TRANSCRIPTION FACTORS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeobox_KN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Meis_PKNOX_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Meis1 PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQB8_MOUSE UniProtKB/TrEMBL
  B1ARH5 ENTREZGENE
  H3BLB6 ENTREZGENE, UniProtKB/TrEMBL
  MEIS1_MOUSE UniProtKB/Swiss-Prot
  Q3UJ00 ENTREZGENE, UniProtKB/TrEMBL
  Q5SVC8 ENTREZGENE
  Q60954 ENTREZGENE
  Q60955 ENTREZGENE
  Q8CIL0 ENTREZGENE
  V9GXB5_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1ARH5 UniProtKB/Swiss-Prot
  Q5SVC8 UniProtKB/Swiss-Prot
  Q60955 UniProtKB/Swiss-Prot
  Q8CIL0 UniProtKB/Swiss-Prot