Trim26 (tripartite motif-containing 26) - Rat Genome Database

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Gene: Trim26 (tripartite motif-containing 26) Mus musculus
Analyze
Symbol: Trim26
Name: tripartite motif-containing 26
RGD ID: 1550505
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of viral entry into host cell; negative regulation of viral release from host cell; and positive regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within immune system process. Located in cytoplasm. Is expressed in genitourinary system. Orthologous to human TRIM26 (tripartite motif containing 26); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; dexamethasone.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI462198; tripartite motif protein 26; tripartite motif protein TRIM26; tripartite motif-containing protein 26; Zfp17; Zfp173; Zfp1736; zinc finger protein 173
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,148,016 - 37,170,290 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,148,026 - 37,170,290 (+)Ensembl
GRCm381736,837,123 - 36,859,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,837,134 - 36,859,398 (+)EnsemblGRCm38mm10GRCm38
MGSCv371736,974,086 - 36,996,325 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,445,234 - 36,467,430 (+)NCBImm8
Celera1740,256,349 - 40,278,617 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA)
nucleus  (IEA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16919269   PMID:17967808   PMID:18287559   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22988430   PMID:23452852   PMID:25763818   PMID:29203640  


Genomics

Comparative Map Data
Trim26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,148,016 - 37,170,290 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,148,026 - 37,170,290 (+)Ensembl
GRCm381736,837,123 - 36,859,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,837,134 - 36,859,398 (+)EnsemblGRCm38mm10GRCm38
MGSCv371736,974,086 - 36,996,325 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,445,234 - 36,467,430 (+)NCBImm8
Celera1740,256,349 - 40,278,617 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
TRIM26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl630,184,455 - 30,213,427 (-)EnsemblGRCh38hg38GRCh38
GRCh38630,184,453 - 30,213,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37630,152,232 - 30,181,183 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,260,211 - 30,289,132 (-)NCBINCBI36hg18NCBI36
Build 34630,260,212 - 30,289,132NCBI
Celera631,750,448 - 31,779,361 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,950,359 - 29,979,394 (-)NCBIHuRef
CHM1_1630,154,280 - 30,183,313 (-)NCBICHM1_1
Trim26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,708,297 - 1,731,176 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl201,709,788 - 1,731,120 (-)Ensembl
Rnor_6.0202,201,685 - 2,224,481 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,201,683 - 2,224,463 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,239,932 - 4,248,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,802,458 - 1,811,283 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,802,469 - 1,811,281 (-)NCBI
Celera202,418,533 - 2,427,356 (-)NCBICelera
Cytogenetic Map20p12NCBI
Trim26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583303,081 - 325,560 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583303,081 - 325,560 (-)NCBIChiLan1.0ChiLan1.0
TRIM26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,632,948 - 30,660,809 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,632,948 - 30,660,809 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,962,838 - 29,990,710 (-)NCBIMhudiblu_PPA_v0panPan3
Trim26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,732,023 - 32,762,964 (-)NCBI
SpeTri2.0NW_004936723827,847 - 859,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,756,345 - 22,780,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,757,794 - 22,767,662 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,795,848 - 24,819,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,284,454 - 42,312,150 (+)NCBI
ChlSab1.1 Ensembl1742,283,713 - 42,313,292 (+)Ensembl
Vero_WHO_p1.0NW_02366604429,844,053 - 29,873,853 (-)NCBI
Trim26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,238,992 - 25,258,454 (+)NCBI

Position Markers
AI462198  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381736,859,194 - 36,859,302UniSTSGRCm38
MGSCv371736,996,139 - 36,996,247UniSTSGRCm37
Celera1740,278,431 - 40,278,539UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS
Whitehead/MRC_RH17484.88UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Trim26  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381736,857,400 - 36,858,055UniSTSGRCm38
MGSCv371736,994,345 - 36,995,000UniSTSGRCm37
Celera1740,276,637 - 40,277,292UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173648271570482715Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2369
Count of miRNA genes:664
Interacting mature miRNAs:821
Transcripts:ENSMUST00000053434, ENSMUST00000123715, ENSMUST00000124136, ENSMUST00000124307, ENSMUST00000130367, ENSMUST00000130801, ENSMUST00000134325, ENSMUST00000144182, ENSMUST00000156872, ENSMUST00000179968
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF532115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF168373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR956641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU369188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000053434   ⟹   ENSMUSP00000060103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,038 - 37,170,272 (+)Ensembl
GRCm38.p6 Ensembl1736,837,146 - 36,859,380 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123715   ⟹   ENSMUSP00000118438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,076 - 37,170,289 (+)Ensembl
GRCm38.p6 Ensembl1736,837,184 - 36,859,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124136   ⟹   ENSMUSP00000120764
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,163,394 - 37,168,831 (+)Ensembl
GRCm38.p6 Ensembl1736,852,502 - 36,857,939 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124307
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,026 - 37,148,747 (+)Ensembl
GRCm38.p6 Ensembl1736,837,134 - 36,837,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130367   ⟹   ENSMUSP00000114896
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,035 - 37,170,290 (+)Ensembl
GRCm38.p6 Ensembl1736,837,143 - 36,859,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130801   ⟹   ENSMUSP00000118388
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,065 - 37,163,581 (+)Ensembl
GRCm38.p6 Ensembl1736,837,173 - 36,852,689 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,033 - 37,166,923 (+)Ensembl
GRCm38.p6 Ensembl1736,837,141 - 36,856,031 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144182   ⟹   ENSMUSP00000114565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,076 - 37,168,519 (+)Ensembl
GRCm38.p6 Ensembl1736,837,184 - 36,857,627 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156872
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,165,526 - 37,170,290 (+)Ensembl
GRCm38.p6 Ensembl1736,854,634 - 36,859,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179968   ⟹   ENSMUSP00000136651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,148,033 - 37,170,272 (+)Ensembl
GRCm38.p6 Ensembl1736,837,141 - 36,859,380 (+)Ensembl
RefSeq Acc Id: NM_001025599   ⟹   NP_001020770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,148,038 - 37,170,290 (+)NCBI
GRCm381736,837,146 - 36,859,398 (+)NCBI
MGSCv371736,974,086 - 36,996,325 (+)RGD
Celera1740,256,354 - 40,278,635 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286726   ⟹   NP_001273655
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,148,038 - 37,170,290 (+)NCBI
GRCm381736,837,146 - 36,859,398 (+)NCBI
Celera1740,256,354 - 40,278,635 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286727   ⟹   NP_001273656
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,148,038 - 37,170,290 (+)NCBI
GRCm381736,837,146 - 36,859,398 (+)NCBI
Celera1740,256,354 - 40,278,635 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524213   ⟹   XP_006524276
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,148,016 - 37,170,290 (+)NCBI
GRCm381736,837,123 - 36,859,398 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524214   ⟹   XP_006524277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,148,016 - 37,170,290 (+)NCBI
GRCm381736,837,123 - 36,859,398 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001020770   ⟸   NM_001025599
- UniProtKB: Q99PN3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273655   ⟸   NM_001286726
- UniProtKB: Q99PN3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273656   ⟸   NM_001286727
- UniProtKB: Q99PN3 (UniProtKB/Swiss-Prot),   Q3UFX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524277   ⟸   XM_006524214
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006524276   ⟸   XM_006524213
- Peptide Label: isoform X1
- UniProtKB: Q99PN3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000114896   ⟸   ENSMUST00000130367
RefSeq Acc Id: ENSMUSP00000118388   ⟸   ENSMUST00000130801
RefSeq Acc Id: ENSMUSP00000120764   ⟸   ENSMUST00000124136
RefSeq Acc Id: ENSMUSP00000114565   ⟸   ENSMUST00000144182
RefSeq Acc Id: ENSMUSP00000060103   ⟸   ENSMUST00000053434
RefSeq Acc Id: ENSMUSP00000136651   ⟸   ENSMUST00000179968
RefSeq Acc Id: ENSMUSP00000118438   ⟸   ENSMUST00000123715
Protein Domains
B box-type   B30.2/SPRY   PRY   RING-type

Promoters
RGD ID:13676008
Promoter ID:EPDNEW_M22153
Type:initiation region
Name:Trim26_1
Description:Mus musculus tripartite motif-containing 26 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381736,837,178 - 36,837,238EPDNEW
RGD ID:6828824
Promoter ID:MM_KWN:23405
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001025599,   OTTMUST00000083971,   OTTMUST00000083972,   OTTMUST00000083973,   OTTMUST00000083975,   OTTMUST00000083977,   OTTMUST00000083978
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361736,973,316 - 36,974,232 (+)MPROMDB
RGD ID:6828825
Promoter ID:MM_KWN:23407
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000083979
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361736,989,211 - 36,989,711 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1337056 AgrOrtholog
Ensembl Genes ENSMUSG00000024457 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000060103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114565 UniProtKB/TrEMBL
  ENSMUSP00000114896 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118388 UniProtKB/TrEMBL
  ENSMUSP00000118438 UniProtKB/Swiss-Prot
  ENSMUSP00000120764 UniProtKB/TrEMBL
  ENSMUSP00000136651 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053434 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123715 UniProtKB/Swiss-Prot
  ENSMUST00000124136 UniProtKB/TrEMBL
  ENSMUST00000130367 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130801 UniProtKB/TrEMBL
  ENSMUST00000144182 UniProtKB/TrEMBL
  ENSMUST00000179968 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22670 UniProtKB/Swiss-Prot
MGD MGI:1337056 ENTREZGENE
NCBI Gene 22670 ENTREZGENE
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim26 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2VDF6_MOUSE UniProtKB/TrEMBL
  B8JJ53_MOUSE UniProtKB/TrEMBL
  B8JJ56_MOUSE UniProtKB/TrEMBL
  B8JJ57_MOUSE UniProtKB/TrEMBL
  J3QN94_MOUSE UniProtKB/TrEMBL
  Q3TBW8_MOUSE UniProtKB/TrEMBL
  Q3UFX3 ENTREZGENE, UniProtKB/TrEMBL
  Q8R0Q5_MOUSE UniProtKB/TrEMBL
  Q99PN3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B8JJ55 UniProtKB/Swiss-Prot
  Q8C9E9 UniProtKB/Swiss-Prot
  Q8JZT7 UniProtKB/Swiss-Prot
  Q99PN2 UniProtKB/Swiss-Prot