Crat (carnitine acetyltransferase) - Rat Genome Database

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Gene: Crat (carnitine acetyltransferase) Mus musculus
Analyze
Symbol: Crat
Name: carnitine acetyltransferase
RGD ID: 1550428
MGI Page MGI
Description: Predicted to have acyl-CoA oxidase activity and carnitine O-acetyltransferase activity. Predicted to be involved in carnitine metabolic process, CoA-linked and fatty acid metabolic process. Localizes to mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human CRAT (carnitine O-acetyltransferase); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; INTERACTS WITH (+)-dexrazoxane; 1,2-dichloroethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW107812; CA; carat; carnitine acetylase; carnitine O-acetyltransferase; CAT
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,290,488 - 30,306,029 (-)NCBIGRCm39mm39
GRCm39 Ensembl230,290,483 - 30,305,825 (-)Ensembl
GRCm38230,400,476 - 30,416,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,400,471 - 30,415,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,255,996 - 30,271,268 (-)NCBIGRCm37mm9NCBIm37
MGSCv36230,222,485 - 30,237,757 (-)NCBImm8
Celera230,105,381 - 30,120,546 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,4-benzoquinone  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (EXP)
2,6-dinitrotoluene  (ISO)
2-(4-chloro-2-methylphenoxy)propanoic acid  (EXP)
2-butoxyethanol  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetyl-CoA  (ISO)
aflatoxin B1  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bromobenzene  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP)
carbon nanotube  (EXP)
carmustine  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
ciprofibrate  (EXP)
Clinofibrate  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
diazinon  (ISO)
dichloroacetic acid  (EXP)
doxorubicin  (EXP)
elemental selenium  (ISO)
fenofibrate  (EXP,ISO)
finasteride  (ISO)
flutamide  (EXP,ISO)
folic acid  (EXP)
gemfibrozil  (ISO)
glafenine  (ISO)
indole-3-methanol  (ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
lamivudine  (EXP)
leflunomide  (ISO)
mecoprop  (EXP)
mercury dichloride  (ISO)
methoxyacetic acid  (ISO)
monosodium L-glutamate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
Nicardipine  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
orphenadrine  (ISO)
ozone  (EXP)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pravastatin  (EXP,ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (ISO)
tetracycline  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
Tridiphane  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9065756   PMID:9680378   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12526798   PMID:14681479   PMID:14711372   PMID:15155726   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16870616   PMID:18287559   PMID:18614015   PMID:18799693   PMID:18839069   PMID:21267068   PMID:21873635   PMID:22560225   PMID:26154055  
PMID:26465331   PMID:26748706   PMID:27997827   PMID:28180063   PMID:29438065   PMID:29444428   PMID:29697769   PMID:30728184   PMID:31813822   PMID:32298772   PMID:32325033  


Genomics

Comparative Map Data
Crat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,290,488 - 30,306,029 (-)NCBIGRCm39mm39
GRCm39 Ensembl230,290,483 - 30,305,825 (-)Ensembl
GRCm38230,400,476 - 30,416,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,400,471 - 30,415,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,255,996 - 30,271,268 (-)NCBIGRCm37mm9NCBIm37
MGSCv36230,222,485 - 30,237,757 (-)NCBImm8
Celera230,105,381 - 30,120,546 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.69NCBI
CRAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9129,094,794 - 129,111,189 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl9129,094,142 - 129,111,189 (-)EnsemblGRCh38hg38GRCh38
GRCh389129,094,794 - 129,110,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,857,073 - 131,873,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,896,894 - 130,912,904 (-)NCBINCBI36hg18NCBI36
Build 349128,936,628 - 128,952,637NCBI
Celera9102,509,370 - 102,525,353 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9101,464,043 - 101,480,035 (-)NCBIHuRef
CHM1_19132,007,896 - 132,023,887 (-)NCBICHM1_1
Crat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,675,684 - 13,689,282 (-)NCBI
Rnor_6.0 Ensembl38,968,417 - 8,981,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.038,967,984 - 8,981,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0314,320,758 - 14,334,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,447,585 - 9,461,180 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.139,447,886 - 9,461,480 (-)NCBI
Celera38,442,229 - 8,455,824 (-)NCBICelera
Cytogenetic Map3p12NCBI
Crat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,417,608 - 1,428,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,417,608 - 1,428,720 (-)NCBIChiLan1.0ChiLan1.0
CRAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,880,057 - 128,896,484 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,880,057 - 128,896,484 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09100,220,019 - 100,236,061 (-)NCBIMhudiblu_PPA_v0panPan3
CRAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,566,708 - 54,580,301 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,566,407 - 54,580,025 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,762,362 - 53,775,887 (+)NCBI
ROS_Cfam_1.0955,462,309 - 55,475,915 (+)NCBI
UMICH_Zoey_3.1954,248,963 - 54,262,568 (+)NCBI
UNSW_CanFamBas_1.0954,560,854 - 54,574,458 (+)NCBI
UU_Cfam_GSD_1.0954,654,564 - 54,668,171 (+)NCBI
Crat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,755,044 - 196,768,721 (-)NCBI
SpeTri2.0NW_00493648716,523,571 - 16,537,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,386,650 - 269,401,331 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,387,430 - 269,401,334 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,403,630 - 303,417,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRAT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,057,365 - 9,072,692 (+)NCBI
ChlSab1.1 Ensembl129,058,824 - 9,072,813 (+)Ensembl
Crat
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,002,032 - 6,013,489 (+)NCBI

Position Markers
AW107812  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38230,402,254 - 30,402,361UniSTSGRCm38
MGSCv37230,257,774 - 30,257,881UniSTSGRCm37
Celera230,107,159 - 30,107,266UniSTS
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
Whitehead/MRC_RH2477.04UniSTS
Crat  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
X85983  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38230,402,254 - 30,402,389UniSTSGRCm38
MGSCv37230,257,774 - 30,257,909UniSTSGRCm37
Celera230,107,159 - 30,107,294UniSTS
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
Whitehead/MRC_RH2475.23UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21432455548324701Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2123971355239859Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22123971355239859Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22379913357799257Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22470000055000000Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22478910333633160Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22478910333633160Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22541803957081799Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22713263056506216Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22771204884183040Mouse
14746979Manh51_mmandible shape 51 (mouse)22907111763071117Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22907111763071117Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3442
Count of miRNA genes:813
Interacting mature miRNAs:1059
Transcripts:ENSMUST00000028207, ENSMUST00000102854, ENSMUST00000102855, ENSMUST00000128593, ENSMUST00000129494, ENSMUST00000132981, ENSMUST00000134120, ENSMUST00000142096, ENSMUST00000146603, ENSMUST00000146822, ENSMUST00000154595, ENSMUST00000155790, ENSMUST00000156702
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028207   ⟹   ENSMUSP00000028207
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,401,101 - 30,415,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102854   ⟹   ENSMUSP00000099918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,402,578 - 30,415,524 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102855   ⟹   ENSMUSP00000099919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,400,471 - 30,415,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,414,060 - 30,415,600 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129494   ⟹   ENSMUSP00000122025
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,413,162 - 30,415,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132981   ⟹   ENSMUSP00000118507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,408,070 - 30,415,308 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134120   ⟹   ENSMUSP00000117593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,413,141 - 30,415,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142096   ⟹   ENSMUSP00000119735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,414,595 - 30,415,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,400,476 - 30,406,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,413,045 - 30,414,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154595   ⟹   ENSMUSP00000114925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,402,637 - 30,404,961 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155790   ⟹   ENSMUSP00000122814
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,402,498 - 30,405,288 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156702   ⟹   ENSMUSP00000117317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl230,408,115 - 30,415,548 (-)Ensembl
RefSeq Acc Id: NM_007760   ⟹   NP_031786
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,290,488 - 30,305,760 (-)NCBI
GRCm38230,400,476 - 30,415,748 (-)ENTREZGENE
MGSCv37230,255,996 - 30,271,268 (-)RGD
Celera230,105,381 - 30,120,546 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497645   ⟹   XP_006497708
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,773 (-)NCBI
GRCm38230,401,937 - 30,415,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497646   ⟹   XP_006497709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,008 (-)NCBI
GRCm38230,401,937 - 30,415,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497647   ⟹   XP_006497710
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,602 (-)NCBI
GRCm38230,401,937 - 30,415,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247065   ⟹   XP_030102925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,488 (-)NCBI
GRCm38230,401,937 - 30,415,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247068   ⟹   XP_030102928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,306,029 (-)NCBI
GRCm38230,401,937 - 30,416,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247069   ⟹   XP_030102929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,751 (-)NCBI
GRCm38230,401,937 - 30,415,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247070   ⟹   XP_030102930
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,533 (-)NCBI
GRCm38230,401,937 - 30,415,521 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247071   ⟹   XP_030102931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,527 (-)NCBI
GRCm38230,401,937 - 30,415,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247072   ⟹   XP_030102932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
GRCm38230,401,937 - 30,414,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157950   ⟹   XP_036013843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
RefSeq Acc Id: XM_036157952   ⟹   XP_036013845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,397 (-)NCBI
RefSeq Acc Id: XM_036157956   ⟹   XP_036013849
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_031786   ⟸   NM_007760
- UniProtKB: P47934 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497708   ⟸   XM_006497645
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006497709   ⟸   XM_006497646
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006497710   ⟸   XM_006497647
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030102928   ⟸   XM_030247068
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102929   ⟸   XM_030247069
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102930   ⟸   XM_030247070
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102931   ⟸   XM_030247071
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030102925   ⟸   XM_030247065
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102932   ⟸   XM_030247072
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000118507   ⟸   ENSMUST00000132981
RefSeq Acc Id: ENSMUSP00000028207   ⟸   ENSMUST00000028207
RefSeq Acc Id: ENSMUSP00000122025   ⟸   ENSMUST00000129494
RefSeq Acc Id: ENSMUSP00000114925   ⟸   ENSMUST00000154595
RefSeq Acc Id: ENSMUSP00000117593   ⟸   ENSMUST00000134120
RefSeq Acc Id: ENSMUSP00000117317   ⟸   ENSMUST00000156702
RefSeq Acc Id: ENSMUSP00000119735   ⟸   ENSMUST00000142096
RefSeq Acc Id: ENSMUSP00000099919   ⟸   ENSMUST00000102855
RefSeq Acc Id: ENSMUSP00000099918   ⟸   ENSMUST00000102854
RefSeq Acc Id: ENSMUSP00000122814   ⟸   ENSMUST00000155790
RefSeq Acc Id: XP_036013845   ⟸   XM_036157952
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036013843   ⟸   XM_036157950
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013849   ⟸   XM_036157956
- Peptide Label: isoform X7
Protein Domains
Carn_acyltransf

Promoters
RGD ID:6831071
Promoter ID:MM_KWN:28535
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000040756,   OTTMUST00000063692
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,260,316 - 30,261,182 (-)MPROMDB
RGD ID:6831072
Promoter ID:MM_KWN:28536
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney
Transcripts:OTTMUST00000040752
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,261,851 - 30,262,957 (-)MPROMDB
RGD ID:6831067
Promoter ID:MM_KWN:28537
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6
Transcripts:ENSMUST00000102854
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,269,681 - 30,270,181 (-)MPROMDB
RGD ID:6831073
Promoter ID:MM_KWN:28539
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3
Transcripts:OTTMUST00000063690,   OTTMUST00000063691
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,270,196 - 30,270,696 (-)MPROMDB
RGD ID:6832105
Promoter ID:MM_KWN:28540
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000102855,   ENSMUST00000113603,   OTTMUST00000040751,   OTTMUST00000040753,   OTTMUST00000040754,   OTTMUST00000040755,   OTTMUST00000040773,   OTTMUST00000040775,   OTTMUST00000040776,   OTTMUST00000063697,   OTTMUST00000075001,   OTTMUST00000084591
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,270,751 - 30,272,297 (+)MPROMDB
RGD ID:6876902
Promoter ID:EPDNEW_M1902
Type:initiation region
Name:Crat_2
Description:Mus musculus carnitine acetyltransferase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1903  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,415,521 - 30,415,581EPDNEW
RGD ID:6876904
Promoter ID:EPDNEW_M1903
Type:initiation region
Name:Crat_1
Description:Mus musculus carnitine acetyltransferase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1902  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,415,771 - 30,415,831EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109501 AgrOrtholog
Ensembl Genes ENSMUSG00000026853 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028207 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099918 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099919 UniProtKB/Swiss-Prot
  ENSMUSP00000114925 UniProtKB/TrEMBL
  ENSMUSP00000117317 UniProtKB/TrEMBL
  ENSMUSP00000117593 UniProtKB/TrEMBL
  ENSMUSP00000118507 UniProtKB/TrEMBL
  ENSMUSP00000119735 UniProtKB/TrEMBL
  ENSMUSP00000122025 UniProtKB/TrEMBL
  ENSMUSP00000122814 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028207 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000102854 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000102855 UniProtKB/Swiss-Prot
  ENSMUST00000129494 UniProtKB/TrEMBL
  ENSMUST00000132981 UniProtKB/TrEMBL
  ENSMUST00000134120 UniProtKB/TrEMBL
  ENSMUST00000142096 UniProtKB/TrEMBL
  ENSMUST00000154595 UniProtKB/TrEMBL
  ENSMUST00000155790 UniProtKB/TrEMBL
  ENSMUST00000156702 UniProtKB/TrEMBL
Gene3D-CATH 3.30.559.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12908 UniProtKB/Swiss-Prot
MGD MGI:109501 ENTREZGENE
NCBI Gene 12908 ENTREZGENE
PANTHER PTHR22589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crat PhenoGen
PROSITE ACYLTRANSF_C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AWE5_MOUSE UniProtKB/TrEMBL
  A2AWJ5_MOUSE UniProtKB/TrEMBL
  B7ZDD7_MOUSE UniProtKB/TrEMBL
  B7ZDD8_MOUSE UniProtKB/TrEMBL
  B7ZDD9_MOUSE UniProtKB/TrEMBL
  CACP_MOUSE UniProtKB/Swiss-Prot
  D6REV7_MOUSE UniProtKB/TrEMBL
  F7BF80_MOUSE UniProtKB/TrEMBL
  H7BX88_MOUSE UniProtKB/TrEMBL
  P47934 ENTREZGENE
UniProt Secondary Q3TCG3 UniProtKB/Swiss-Prot
  Q3V1Y3 UniProtKB/Swiss-Prot
  Q923A6 UniProtKB/Swiss-Prot