Crat (carnitine acetyltransferase) - Rat Genome Database

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Gene: Crat (carnitine acetyltransferase) Mus musculus
Analyze
Symbol: Crat
Name: carnitine acetyltransferase
RGD ID: 1550428
MGI Page MGI
Description: Predicted to enable acyl-CoA oxidase activity and carnitine O-acetyltransferase activity. Predicted to be involved in carnitine metabolic process, CoA-linked and fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human CRAT (carnitine O-acetyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW107812; CA; carat; carnitine acetylase; carnitine O-acetyltransferase; CAT
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,290,488 - 30,306,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,290,483 - 30,305,825 (-)EnsemblGRCm39 Ensembl
GRCm38230,400,476 - 30,416,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,400,471 - 30,415,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,255,996 - 30,271,268 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,222,485 - 30,237,757 (-)NCBIMGSCv36mm8
Celera230,105,381 - 30,120,546 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,4-benzoquinone  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (EXP)
2,6-dinitrotoluene  (ISO)
2-(4-chloro-2-methylphenoxy)propanoic acid  (EXP)
2-butoxyethanol  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetyl-CoA  (ISO)
aflatoxin B1  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bromobenzene  (ISO)
Butoxyacetic acid  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP)
carbon nanotube  (EXP)
carmustine  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
ciprofibrate  (EXP)
Clinofibrate  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
diazinon  (ISO)
dichloroacetic acid  (EXP)
doxorubicin  (EXP)
elemental selenium  (ISO)
epoxiconazole  (EXP)
Ethoxyacetic acid  (ISO)
fenofibrate  (EXP,ISO)
finasteride  (ISO)
flutamide  (EXP,ISO)
folic acid  (EXP)
gemfibrozil  (ISO)
glafenine  (ISO)
indole-3-methanol  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lamivudine  (EXP)
leflunomide  (ISO)
mecoprop  (EXP)
mercury dichloride  (ISO)
methoxyacetic acid  (ISO)
monosodium L-glutamate  (EXP)
Muraglitazar  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
nicardipine  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
orphenadrine  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pravastatin  (EXP,ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (ISO)
tetracycline  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
Tridiphane  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9065756   PMID:9680378   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12526798   PMID:14681479   PMID:14711372   PMID:15155726   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16870616   PMID:18287559   PMID:18614015   PMID:18799693   PMID:18839069   PMID:21267068   PMID:21873635   PMID:22560225   PMID:26154055  
PMID:26465331   PMID:26748706   PMID:27997827   PMID:28180063   PMID:29438065   PMID:29444428   PMID:29697769   PMID:30728184   PMID:31813822   PMID:32298772   PMID:32325033   PMID:35028529  


Genomics

Comparative Map Data
Crat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,290,488 - 30,306,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,290,483 - 30,305,825 (-)EnsemblGRCm39 Ensembl
GRCm38230,400,476 - 30,416,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,400,471 - 30,415,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,255,996 - 30,271,268 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,222,485 - 30,237,757 (-)NCBIMGSCv36mm8
Celera230,105,381 - 30,120,546 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.69NCBI
CRAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,094,794 - 129,110,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9129,094,142 - 129,111,189 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,857,073 - 131,873,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,896,894 - 130,912,904 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,936,628 - 128,952,637NCBI
Celera9102,509,370 - 102,525,353 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,464,043 - 101,480,035 (-)NCBIHuRef
CHM1_19132,007,896 - 132,023,887 (-)NCBICHM1_1
T2T-CHM13v2.09141,298,255 - 141,314,238 (-)NCBIT2T-CHM13v2.0
Crat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,675,684 - 13,689,282 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,675,684 - 13,689,255 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,747,217 - 16,760,812 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0325,332,179 - 25,345,774 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0323,578,162 - 23,591,743 (-)NCBIRnor_WKY
Rnor_6.038,967,984 - 8,981,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,968,417 - 8,981,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,320,758 - 14,334,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,447,585 - 9,461,180 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,447,886 - 9,461,480 (-)NCBI
Celera38,442,229 - 8,455,824 (-)NCBICelera
Cytogenetic Map3p12NCBI
Crat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,417,608 - 1,428,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,417,608 - 1,428,720 (-)NCBIChiLan1.0ChiLan1.0
CRAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,880,057 - 128,896,484 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,880,057 - 128,896,484 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09100,220,019 - 100,236,061 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CRAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,566,708 - 54,580,301 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,566,407 - 54,580,025 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,762,362 - 53,775,887 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,462,309 - 55,475,915 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,462,359 - 55,498,279 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,248,963 - 54,262,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,560,854 - 54,574,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,654,564 - 54,668,171 (+)NCBIUU_Cfam_GSD_1.0
Crat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,755,044 - 196,768,721 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,523,571 - 16,537,248 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648716,523,571 - 16,537,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,386,650 - 269,401,331 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,387,430 - 269,401,334 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,403,630 - 303,417,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,057,365 - 9,072,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,058,824 - 9,072,813 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666096491,149 - 506,483 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,002,568 - 6,013,491 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,002,032 - 6,013,489 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3442
Count of miRNA genes:813
Interacting mature miRNAs:1059
Transcripts:ENSMUST00000028207, ENSMUST00000102854, ENSMUST00000102855, ENSMUST00000128593, ENSMUST00000129494, ENSMUST00000132981, ENSMUST00000134120, ENSMUST00000142096, ENSMUST00000146603, ENSMUST00000146822, ENSMUST00000154595, ENSMUST00000155790, ENSMUST00000156702
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse

Markers in Region
AW107812  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38230,402,254 - 30,402,361UniSTSGRCm38
MGSCv37230,257,774 - 30,257,881UniSTSGRCm37
Celera230,107,159 - 30,107,266UniSTS
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
Whitehead/MRC_RH2477.04UniSTS
Crat  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
X85983  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38230,402,254 - 30,402,389UniSTSGRCm38
MGSCv37230,257,774 - 30,257,909UniSTSGRCm37
Celera230,107,159 - 30,107,294UniSTS
Cytogenetic Map2BUniSTS
cM Map218.0UniSTS
Whitehead/MRC_RH2475.23UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028207   ⟹   ENSMUSP00000028207
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,291,113 - 30,305,825 (-)Ensembl
GRCm38.p6 Ensembl230,401,101 - 30,415,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102854   ⟹   ENSMUSP00000099918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,292,590 - 30,305,536 (-)Ensembl
GRCm38.p6 Ensembl230,402,578 - 30,415,524 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102855   ⟹   ENSMUSP00000099919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,290,483 - 30,305,783 (-)Ensembl
GRCm38.p6 Ensembl230,400,471 - 30,415,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,304,072 - 30,305,612 (-)Ensembl
GRCm38.p6 Ensembl230,414,060 - 30,415,600 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129494   ⟹   ENSMUSP00000122025
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,303,174 - 30,305,345 (-)Ensembl
GRCm38.p6 Ensembl230,413,162 - 30,415,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132981   ⟹   ENSMUSP00000118507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,298,082 - 30,305,320 (-)Ensembl
GRCm38.p6 Ensembl230,408,070 - 30,415,308 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134120   ⟹   ENSMUSP00000117593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,303,153 - 30,305,530 (-)Ensembl
GRCm38.p6 Ensembl230,413,141 - 30,415,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142096   ⟹   ENSMUSP00000119735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,304,607 - 30,305,419 (-)Ensembl
GRCm38.p6 Ensembl230,414,595 - 30,415,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,290,488 - 30,296,691 (-)Ensembl
GRCm38.p6 Ensembl230,400,476 - 30,406,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,303,057 - 30,304,351 (-)Ensembl
GRCm38.p6 Ensembl230,413,045 - 30,414,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154595   ⟹   ENSMUSP00000114925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,292,649 - 30,294,973 (-)Ensembl
GRCm38.p6 Ensembl230,402,637 - 30,404,961 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155790   ⟹   ENSMUSP00000122814
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,292,510 - 30,295,300 (-)Ensembl
GRCm38.p6 Ensembl230,402,498 - 30,405,288 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156702   ⟹   ENSMUSP00000117317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl230,298,127 - 30,305,560 (-)Ensembl
GRCm38.p6 Ensembl230,408,115 - 30,415,548 (-)Ensembl
RefSeq Acc Id: NM_007760   ⟹   NP_031786
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,290,488 - 30,305,760 (-)NCBI
GRCm38230,400,476 - 30,415,748 (-)ENTREZGENE
MGSCv37230,255,996 - 30,271,268 (-)RGD
Celera230,105,381 - 30,120,546 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497645   ⟹   XP_006497708
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,773 (-)NCBI
GRCm38230,401,937 - 30,415,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497646   ⟹   XP_006497709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,008 (-)NCBI
GRCm38230,401,937 - 30,415,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497647   ⟹   XP_006497710
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,602 (-)NCBI
GRCm38230,401,937 - 30,415,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247065   ⟹   XP_030102925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,488 (-)NCBI
GRCm38230,401,937 - 30,415,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247068   ⟹   XP_030102928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,306,029 (-)NCBI
GRCm38230,401,937 - 30,416,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247069   ⟹   XP_030102929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,751 (-)NCBI
GRCm38230,401,937 - 30,415,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247070   ⟹   XP_030102930
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,533 (-)NCBI
GRCm38230,401,937 - 30,415,521 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247071   ⟹   XP_030102931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,527 (-)NCBI
GRCm38230,401,937 - 30,415,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247072   ⟹   XP_030102932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
GRCm38230,401,937 - 30,414,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157950   ⟹   XP_036013843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157952   ⟹   XP_036013845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,305,397 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157956   ⟹   XP_036013849
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39230,291,949 - 30,304,120 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031786   ⟸   NM_007760
- UniProtKB: Q923A6 (UniProtKB/Swiss-Prot),   P47934 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497708   ⟸   XM_006497645
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006497709   ⟸   XM_006497646
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006497710   ⟸   XM_006497647
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030102928   ⟸   XM_030247068
- Peptide Label: isoform X5
- UniProtKB: H7BX88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102929   ⟸   XM_030247069
- Peptide Label: isoform X5
- UniProtKB: H7BX88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102930   ⟸   XM_030247070
- Peptide Label: isoform X5
- UniProtKB: H7BX88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102931   ⟸   XM_030247071
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030102925   ⟸   XM_030247065
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102932   ⟸   XM_030247072
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000118507   ⟸   ENSMUST00000132981
RefSeq Acc Id: ENSMUSP00000028207   ⟸   ENSMUST00000028207
RefSeq Acc Id: ENSMUSP00000122025   ⟸   ENSMUST00000129494
RefSeq Acc Id: ENSMUSP00000114925   ⟸   ENSMUST00000154595
RefSeq Acc Id: ENSMUSP00000117593   ⟸   ENSMUST00000134120
RefSeq Acc Id: ENSMUSP00000117317   ⟸   ENSMUST00000156702
RefSeq Acc Id: ENSMUSP00000119735   ⟸   ENSMUST00000142096
RefSeq Acc Id: ENSMUSP00000099919   ⟸   ENSMUST00000102855
RefSeq Acc Id: ENSMUSP00000099918   ⟸   ENSMUST00000102854
RefSeq Acc Id: ENSMUSP00000122814   ⟸   ENSMUST00000155790
RefSeq Acc Id: XP_036013845   ⟸   XM_036157952
- Peptide Label: isoform X5
- UniProtKB: H7BX88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013843   ⟸   XM_036157950
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013849   ⟸   XM_036157956
- Peptide Label: isoform X7
Protein Domains
Carn_acyltransf

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47934-F1-model_v2 AlphaFold P47934 1-626 view protein structure

Promoters
RGD ID:6831071
Promoter ID:MM_KWN:28535
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000040756,   OTTMUST00000063692
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,260,316 - 30,261,182 (-)MPROMDB
RGD ID:6831072
Promoter ID:MM_KWN:28536
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney
Transcripts:OTTMUST00000040752
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,261,851 - 30,262,957 (-)MPROMDB
RGD ID:6831067
Promoter ID:MM_KWN:28537
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6
Transcripts:ENSMUST00000102854
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,269,681 - 30,270,181 (-)MPROMDB
RGD ID:6831073
Promoter ID:MM_KWN:28539
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3
Transcripts:OTTMUST00000063690,   OTTMUST00000063691
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,270,196 - 30,270,696 (-)MPROMDB
RGD ID:6832105
Promoter ID:MM_KWN:28540
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000102855,   ENSMUST00000113603,   OTTMUST00000040751,   OTTMUST00000040753,   OTTMUST00000040754,   OTTMUST00000040755,   OTTMUST00000040773,   OTTMUST00000040775,   OTTMUST00000040776,   OTTMUST00000063697,   OTTMUST00000075001,   OTTMUST00000084591
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36230,270,751 - 30,272,297 (+)MPROMDB
RGD ID:6876902
Promoter ID:EPDNEW_M1902
Type:initiation region
Name:Crat_2
Description:Mus musculus carnitine acetyltransferase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1903  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,415,521 - 30,415,581EPDNEW
RGD ID:6876904
Promoter ID:EPDNEW_M1903
Type:initiation region
Name:Crat_1
Description:Mus musculus carnitine acetyltransferase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1902  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,415,771 - 30,415,831EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109501 AgrOrtholog
Ensembl Genes ENSMUSG00000026853 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028207 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099918 ENTREZGENE
  ENSMUSP00000099918.4 UniProtKB/TrEMBL
  ENSMUSP00000099919 UniProtKB/Swiss-Prot
  ENSMUSP00000114925.2 UniProtKB/TrEMBL
  ENSMUSP00000117317.2 UniProtKB/TrEMBL
  ENSMUSP00000117593.2 UniProtKB/TrEMBL
  ENSMUSP00000118507.3 UniProtKB/TrEMBL
  ENSMUSP00000119735.2 UniProtKB/TrEMBL
  ENSMUSP00000122025.2 UniProtKB/TrEMBL
  ENSMUSP00000122814.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028207 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000102854 ENTREZGENE
  ENSMUST00000102854.10 UniProtKB/TrEMBL
  ENSMUST00000102855 UniProtKB/Swiss-Prot
  ENSMUST00000129494.2 UniProtKB/TrEMBL
  ENSMUST00000132981.9 UniProtKB/TrEMBL
  ENSMUST00000134120.2 UniProtKB/TrEMBL
  ENSMUST00000142096.2 UniProtKB/TrEMBL
  ENSMUST00000154595.2 UniProtKB/TrEMBL
  ENSMUST00000155790.8 UniProtKB/TrEMBL
  ENSMUST00000156702.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.20 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carn_acyl_trans_N UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12908 UniProtKB/Swiss-Prot
MGD MGI:109501 ENTREZGENE
NCBI Gene 12908 ENTREZGENE
PANTHER PTHR22589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crat PhenoGen
PROSITE ACYLTRANSF_C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AWE5_MOUSE UniProtKB/TrEMBL
  A2AWJ5_MOUSE UniProtKB/TrEMBL
  B7ZDD7_MOUSE UniProtKB/TrEMBL
  B7ZDD8_MOUSE UniProtKB/TrEMBL
  B7ZDD9_MOUSE UniProtKB/TrEMBL
  CACP_MOUSE UniProtKB/Swiss-Prot
  D6REV7_MOUSE UniProtKB/TrEMBL
  F7BF80_MOUSE UniProtKB/TrEMBL
  H7BX88 ENTREZGENE, UniProtKB/TrEMBL
  P47934 ENTREZGENE
  Q923A6 ENTREZGENE
UniProt Secondary Q3TCG3 UniProtKB/Swiss-Prot
  Q3V1Y3 UniProtKB/Swiss-Prot
  Q923A6 UniProtKB/Swiss-Prot