Cops3 (COP9 signalosome subunit 3) - Rat Genome Database

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Gene: Cops3 (COP9 signalosome subunit 3) Mus musculus
Analyze
Symbol: Cops3
Name: COP9 signalosome subunit 3
RGD ID: 1550334
MGI Page MGI
Description: Acts upstream of or within in utero embryonic development. Part of COP9 signalosome. Is expressed in several structures, including central nervous system; inner cell mass; reproductive system; skeletal muscle tissue; and urinary system. Orthologous to human COPS3 (COP9 signalosome subunit 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: COP9 (constitutive photomorphogenic) homolog, subunit 3; COP9 (constitutive photomorphogenic), subunit 3; COP9 complex S3; COP9 signalosome complex subunit 3; Cs; Csn3; JAB1-containing signalosome subunit 3; Sg; Sgn3; signalosome subunit 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,708,621 - 59,739,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,708,621 - 59,730,664 (-)EnsemblGRCm39 Ensembl
GRCm381159,817,795 - 59,848,245 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,817,795 - 59,839,838 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,631,306 - 59,653,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,354,384 - 60,376,347 (-)NCBIMGSCv36mm8
MGSCv361159,633,999 - 59,655,962 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The COP9 complex is conserved between plants and mammals and is related to the 26S proteasome regulatory complex. Wei N, etal., Curr Biol 1998 Jul 30-Aug 13;8(16):919-22.
8. COP9 signalosome subunit 3 is essential for maintenance of cell proliferation in the mouse embryonic epiblast. Yan J, etal., Mol Cell Biol 2003 Oct;23(19):6798-808.
Additional References at PubMed
PMID:10349636   PMID:10782111   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11114242   PMID:11217851   PMID:11337588   PMID:11704659   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:17273973   PMID:17967808   PMID:18287559   PMID:21124890   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21991377   PMID:22988430  
PMID:24457600   PMID:24604556   PMID:24973710   PMID:25737280   PMID:26365490   PMID:27113764   PMID:27325702   PMID:28623958   PMID:30631038   PMID:32325033   PMID:32554809   PMID:33911083  
PMID:34264319   PMID:35491006   PMID:36451342  


Genomics

Comparative Map Data
Cops3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,708,621 - 59,739,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,708,621 - 59,730,664 (-)EnsemblGRCm39 Ensembl
GRCm381159,817,795 - 59,848,245 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,817,795 - 59,839,838 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,631,306 - 59,653,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,354,384 - 60,376,347 (-)NCBIMGSCv36mm8
MGSCv361159,633,999 - 59,655,962 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.8NCBI
COPS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,246,616 - 17,281,246 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,246,616 - 17,281,273 (-)EnsemblGRCh38hg38GRCh38
GRCh371717,149,930 - 17,184,560 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,090,864 - 17,125,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 341717,090,865 - 17,125,316NCBI
Celera1718,089,725 - 18,124,196 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,902,830 - 16,937,477 (-)NCBIHuRef
CHM1_11717,159,638 - 17,194,346 (-)NCBICHM1_1
T2T-CHM13v2.01717,192,637 - 17,227,324 (-)NCBIT2T-CHM13v2.0
Cops3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,117,664 - 45,151,868 (-)NCBIGRCr8
mRatBN7.21044,618,115 - 44,652,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,618,115 - 44,641,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,318,474 - 49,341,861 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,808,835 - 48,832,218 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,312,440 - 44,335,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,182,680 - 46,206,083 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,182,687 - 46,206,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,938,610 - 45,962,047 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,139,837 - 46,163,246 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,153,461 - 46,176,869 (-)NCBI
Celera1043,879,656 - 43,903,024 (-)NCBICelera
Cytogenetic Map10q22NCBI
Cops3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577638,749 - 664,390 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955577639,616 - 664,390 (+)NCBIChiLan1.0ChiLan1.0
COPS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21951,764,384 - 51,799,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11756,476,072 - 56,510,971 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,013,180 - 34,047,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,944,506 - 38,978,514 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,944,618 - 38,978,235 (+)Ensemblpanpan1.1panPan2
COPS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1542,143,397 - 42,169,509 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl542,143,474 - 42,169,517 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,283,352 - 42,309,239 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0542,251,785 - 42,277,904 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl542,251,786 - 42,280,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1542,218,758 - 42,244,870 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0542,166,098 - 42,192,196 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,358,201 - 42,384,316 (+)NCBIUU_Cfam_GSD_1.0
Cops3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,936,099 - 61,961,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936741905,252 - 931,408 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936741905,593 - 931,148 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,994,310 - 61,024,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,000,562 - 61,023,920 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,034,590 - 63,057,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COPS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11616,280,490 - 16,331,538 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660594,596,000 - 4,632,806 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cops3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248494,124,586 - 4,150,933 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248494,125,188 - 4,150,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cops3
719 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:874
Count of miRNA genes:553
Interacting mature miRNAs:657
Transcripts:ENSMUST00000019517, ENSMUST00000124101, ENSMUST00000126489, ENSMUST00000130027, ENSMUST00000133652, ENSMUST00000136901, ENSMUST00000141415, ENSMUST00000156837
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
13513917Heal54_mwound healing/ regeneration 54 (mouse)115787291759879610Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse

Markers in Region
RH124371  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,835,729 - 59,835,826UniSTSGRCm38
MGSCv371159,649,231 - 59,649,328UniSTSGRCm37
Cytogenetic Map11B2UniSTS
RH137040  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,817,949 - 59,818,106UniSTSGRCm38
MGSCv371159,631,451 - 59,631,608UniSTSGRCm37
Cytogenetic Map11B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001417566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC068808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF071313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000019517   ⟹   ENSMUSP00000019517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,708,621 - 59,730,664 (-)Ensembl
GRCm38.p6 Ensembl1159,817,795 - 59,839,838 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,714,112 - 59,730,664 (-)Ensembl
GRCm38.p6 Ensembl1159,823,286 - 59,839,838 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,708,621 - 59,709,513 (-)Ensembl
GRCm38.p6 Ensembl1159,817,795 - 59,818,687 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,717,036 - 59,730,664 (-)Ensembl
GRCm38.p6 Ensembl1159,826,210 - 59,839,838 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,727,464 - 59,730,638 (-)Ensembl
GRCm38.p6 Ensembl1159,836,638 - 59,839,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,715,140 - 59,724,119 (-)Ensembl
GRCm38.p6 Ensembl1159,824,314 - 59,833,293 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141415   ⟹   ENSMUSP00000120305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,723,917 - 59,730,578 (-)Ensembl
GRCm38.p6 Ensembl1159,833,091 - 59,839,752 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156837   ⟹   ENSMUSP00000117288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,712,186 - 59,727,761 (-)Ensembl
GRCm38.p6 Ensembl1159,821,360 - 59,836,935 (-)Ensembl
RefSeq Acc Id: NM_001417566   ⟹   NP_001404495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,730,638 (-)NCBI
RefSeq Acc Id: NM_011991   ⟹   NP_036121
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,730,638 (-)NCBI
GRCm381159,817,804 - 59,839,767 (-)NCBI
MGSCv371159,631,306 - 59,653,269 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184531
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,730,638 (-)NCBI
RefSeq Acc Id: NR_184532
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,730,638 (-)NCBI
RefSeq Acc Id: NR_184533
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,730,638 (-)NCBI
RefSeq Acc Id: NR_184534
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,739,080 (-)NCBI
RefSeq Acc Id: NR_184535
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,630 - 59,739,080 (-)NCBI
RefSeq Acc Id: XM_030246025   ⟹   XP_030101885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,621 - 59,738,907 (-)NCBI
GRCm381159,817,795 - 59,848,081 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156712   ⟹   XP_036012605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,621 - 59,732,604 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949446
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,701 - 59,738,907 (-)NCBI
GRCm381159,817,875 - 59,848,081 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936968
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,708,701 - 59,730,689 (-)NCBI
Sequence:
RefSeq Acc Id: NP_036121   ⟸   NM_011991
- Peptide Label: isoform 1
- UniProtKB: O88543 (UniProtKB/Swiss-Prot),   Q3UQL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101885   ⟸   XM_030246025
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000117288   ⟸   ENSMUST00000156837
RefSeq Acc Id: ENSMUSP00000019517   ⟸   ENSMUST00000019517
RefSeq Acc Id: ENSMUSP00000120305   ⟸   ENSMUST00000141415
RefSeq Acc Id: XP_036012605   ⟸   XM_036156712
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001404495   ⟸   NM_001417566
- Peptide Label: isoform 2
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88543-F1-model_v2 AlphaFold O88543 1-423 view protein structure

Promoters
RGD ID:6820655
Promoter ID:MM_KWN:7667
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000018395
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,632,681 - 59,633,181 (-)MPROMDB
RGD ID:6820652
Promoter ID:MM_KWN:7671
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000018389,   OTTMUST00000018390,   OTTMUST00000018391,   OTTMUST00000018393,   OTTMUST00000018394
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,653,186 - 59,653,792 (-)MPROMDB
RGD ID:8674844
Promoter ID:EPDNEW_M15453
Type:initiation region
Name:Cops3_1
Description:Mus musculus COP9 signalosome subunit 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,839,812 - 59,839,872EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349409 AgrOrtholog
Ensembl Genes ENSMUSG00000019373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019517 ENTREZGENE
  ENSMUST00000019517.10 UniProtKB/Swiss-Prot
  ENSMUST00000141415.2 UniProtKB/TrEMBL
  ENSMUST00000156837.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.25.40.570 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CSN3_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26572 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1349409 ENTREZGENE
NCBI Gene 26572 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10758:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CSN3-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cops3 PhenoGen
PROSITE PCI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PINT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CSN3_MOUSE UniProtKB/Swiss-Prot
  D3Z036_MOUSE UniProtKB/TrEMBL
  F6YCA7_MOUSE UniProtKB/TrEMBL
  O88543 ENTREZGENE
  Q3TEA5_MOUSE UniProtKB/TrEMBL
  Q3UQL2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Cops3  COP9 signalosome subunit 3    COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)  Symbol and/or name change 5135510 APPROVED