Rbm15b (RNA binding motif protein 15B) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Rbm15b (RNA binding motif protein 15B) Mus musculus
Analyze
Symbol: Rbm15b
Name: RNA binding motif protein 15B
RGD ID: 1550290
MGI Page MGI
Description: Predicted to have RNA binding activity. Involved in mRNA export from nucleus. Localizes to nuclear envelope and nuclear speck. Is expressed in central nervous system and sensory organ. Orthologous to human RBM15B (RNA binding motif protein 15B); INTERACTS WITH 1,2-dimethylhydrazine; Benzo[ghi]perylene; clobetasol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1810017N16Rik; putative RNA-binding protein 15B; RNA binding motif protein 15 pseudogene; RNA-binding motif protein 15B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,758,127 - 106,764,274 (-)NCBIGRCm39mm39
GRCm389106,880,928 - 106,887,075 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,880,918 - 106,887,428 (-)EnsemblGRCm38mm10GRCm38
MGSCv379106,786,316 - 106,789,331 (-)NCBIGRCm37mm9NCBIm37
MGSCv369106,613,444 - 106,616,504 (-)NCBImm8
Celera9106,508,044 - 106,510,721 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073   PMID:19586903   PMID:21267068   PMID:21873635  
PMID:30196744   PMID:32325033  


Genomics

Comparative Map Data
Rbm15b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,758,127 - 106,764,274 (-)NCBIGRCm39mm39
GRCm389106,880,928 - 106,887,075 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,880,918 - 106,887,428 (-)EnsemblGRCm38mm10GRCm38
MGSCv379106,786,316 - 106,789,331 (-)NCBIGRCm37mm9NCBIm37
MGSCv369106,613,444 - 106,616,504 (-)NCBImm8
Celera9106,508,044 - 106,510,721 (-)NCBICelera
Cytogenetic Map9F1NCBI
RBM15B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl351,391,285 - 51,397,908 (+)EnsemblGRCh38hg38GRCh38
GRCh38351,391,285 - 51,397,908 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37351,428,699 - 51,435,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,403,771 - 51,410,379 (+)NCBINCBI36hg18NCBI36
Build 34351,403,770 - 51,410,374NCBI
Celera351,403,085 - 51,409,693 (+)NCBI
Cytogenetic Map3p21.2NCBI
HuRef351,485,926 - 51,492,566 (+)NCBIHuRef
CHM1_1351,380,607 - 51,387,247 (+)NCBICHM1_1
Rbm15b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08115,618,242 - 115,623,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,618,555 - 115,621,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,977,072 - 114,980,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,105,207 - 112,108,297 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,125,047 - 112,127,752 (-)NCBI
Celera8106,855,540 - 106,860,141 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rbm15b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555323,080,207 - 3,082,312 (+)NCBIChiLan1.0ChiLan1.0
RBM15B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1352,555,251 - 52,562,454 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0351,321,963 - 51,325,092 (+)NCBIMhudiblu_PPA_v0panPan3
RBM15B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2038,191,439 - 38,192,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12038,191,079 - 38,194,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rbm15b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365292,780,110 - 2,782,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM15B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,664,472 - 33,669,456 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,664,387 - 33,671,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,890,007 - 36,893,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM15B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12212,732,260 - 12,735,401 (+)NCBI
ChlSab1.1 Ensembl2212,732,396 - 12,735,068 (+)Ensembl
Rbm15b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,170,042 - 5,176,573 (+)NCBI

Position Markers
RH129214  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,888,786 - 106,888,949UniSTSGRCm38
MGSCv379106,791,117 - 106,791,280UniSTSGRCm37
Celera9106,512,930 - 106,513,093UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS
Rbm15b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,884,203 - 106,884,742UniSTSGRCm38
MGSCv379106,786,534 - 106,787,073UniSTSGRCm37
Celera9106,508,262 - 106,508,801UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
AI447437  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,149,258 - 8,149,468UniSTSGRCm38
GRCm389106,881,020 - 106,881,233UniSTSGRCm38
MGSCv37198,223,748 - 8,223,958UniSTSGRCm37
MGSCv379106,783,351 - 106,783,564UniSTSGRCm37
Celera197,907,934 - 7,908,144UniSTS
Celera9106,505,079 - 106,505,292UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH193.66UniSTS
RH124334  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,888,863 - 106,889,220UniSTSGRCm38
GRCm389106,888,838 - 106,889,220UniSTSGRCm38
MGSCv379106,791,194 - 106,791,551UniSTSGRCm37
MGSCv379106,791,169 - 106,791,551UniSTSGRCm37
Celera9106,512,982 - 106,513,364UniSTS
Celera9106,513,007 - 106,513,364UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS
RH125717  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,888,789 - 106,888,948UniSTSGRCm38
MGSCv379106,791,120 - 106,791,279UniSTSGRCm37
Celera9106,512,933 - 106,513,092UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS
Whitehead/MRC_RH91104.08UniSTS
RH125819  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,888,759 - 106,888,976UniSTSGRCm38
MGSCv379106,791,090 - 106,791,307UniSTSGRCm37
Celera9106,512,903 - 106,513,120UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS
Whitehead/MRC_RH91103.78UniSTS
D17914  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,888,790 - 106,888,956UniSTSGRCm38
MGSCv379106,791,121 - 106,791,287UniSTSGRCm37
Celera9106,512,934 - 106,513,100UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS
Whitehead_YAC9 UniSTS
SGC32878  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,889,105 - 106,889,211UniSTSGRCm38
MGSCv379106,791,436 - 106,791,542UniSTSGRCm37
Celera9106,513,249 - 106,513,355UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.7UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:283
Count of miRNA genes:241
Interacting mature miRNAs:257
Transcripts:ENSMUST00000055843, ENSMUST00000098424
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000055843   ⟹   ENSMUSP00000059330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,880,918 - 106,887,428 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185707   ⟹   ENSMUSP00000139726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,884,751 - 106,885,619 (-)Ensembl
RefSeq Acc Id: NM_175402   ⟹   NP_780611
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,758,127 - 106,764,274 (-)NCBI
GRCm389106,880,928 - 106,887,075 (-)NCBI
MGSCv379106,786,316 - 106,789,331 (-)RGD
Celera9106,508,044 - 106,510,721 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_780611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH52180 (Get FASTA)   NCBI Sequence Viewer  
  BAC35951 (Get FASTA)   NCBI Sequence Viewer  
  BAE23326 (Get FASTA)   NCBI Sequence Viewer  
  BAE36993 (Get FASTA)   NCBI Sequence Viewer  
  Q6PHZ5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_780611   ⟸   NM_175402
- UniProtKB: Q6PHZ5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139726   ⟸   ENSMUST00000185707
RefSeq Acc Id: ENSMUSP00000059330   ⟸   ENSMUST00000055843
Protein Domains
RRM   SPOC

Promoters
RGD ID:8670764
Promoter ID:EPDNEW_M13413
Type:multiple initiation site
Name:Rbm15b_1
Description:Mus musculus RNA binding motif protein 15B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389106,887,075 - 106,887,135EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923598 AgrOrtholog
Ensembl Genes ENSMUSG00000045365
  ENSMUSG00000074102 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059330 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000139726 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055843 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000185707 UniProtKB/TrEMBL
Gene3D-CATH 2.40.290.10 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM15B_RRM1 UniProtKB/Swiss-Prot
  RBM15B_RRM2 UniProtKB/Swiss-Prot
  RBM15B_RRM3 UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  SPOC-like_C_dom_sf UniProtKB/Swiss-Prot
  SPOC_C UniProtKB/Swiss-Prot
  SPOC_met UniProtKB/Swiss-Prot
KEGG Report mmu:109095 UniProtKB/Swiss-Prot
MGD MGI:1923598 ENTREZGENE
NCBI Gene 109095 ENTREZGENE
Pfam RRM_1 UniProtKB/Swiss-Prot
  SPOC UniProtKB/Swiss-Prot
PhenoGen Rbm15b PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
  SPOC UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100939 UniProtKB/Swiss-Prot
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.431589 ENTREZGENE
  Mm.491186 ENTREZGENE
UniProt A0A087WPD2_MOUSE UniProtKB/TrEMBL
  Q3TRN4_MOUSE UniProtKB/TrEMBL
  Q6PHZ5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8C6G2 UniProtKB/Swiss-Prot