F13a1 (coagulation factor XIII, A1 subunit) - Rat Genome Database

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Gene: F13a1 (coagulation factor XIII, A1 subunit) Mus musculus
Analyze
Symbol: F13a1
Name: coagulation factor XIII, A1 subunit
RGD ID: 1550288
MGI Page MGI
Description: Enables protein-glutamine gamma-glutamyltransferase activity. Involved in blood coagulation, fibrin clot formation. Acts upstream of or within blood coagulation and peptide cross-linking. Located in collagen-containing extracellular matrix. Is expressed in several structures, including alimentary system; hemolymphoid system; nervous system; reproductive system; and respiratory system. Used to study factor XIII deficiency. Human ortholog(s) of this gene implicated in artery disease (multiple); factor XIII deficiency; priapism; and thrombophilia (multiple). Orthologous to human F13A1 (coagulation factor XIII A chain).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 1200014I03Rik; AI462306; coagulation factor XIII A chain; coagulation factor XIII, alpha subunit; coagulation factor XIIIa; F13a; Factor XIIIA; protein-glutamine gamma-glutamyltransferase A chain; transglutaminase A chain
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,051,150 - 37,234,220 (-)NCBIGRCm39mm39
GRCm39 Ensembl1337,051,152 - 37,234,220 (-)Ensembl
GRCm381336,867,178 - 37,050,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1336,867,178 - 37,050,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371336,959,047 - 37,142,113 (-)NCBIGRCm37mm9NCBIm37
MGSCv361336,874,653 - 37,056,670 (-)NCBImm8
Celera1337,983,710 - 38,163,470 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3,7-dihydropurine-6-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
bisphenol F  (EXP)
calcitriol  (ISO)
carbon nanotube  (EXP)
chloroprene  (ISO)
chrysene  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diclofenac  (EXP)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
eugenol  (ISO)
genistein  (EXP)
graphite  (ISO)
indole-3-methanol  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoprenaline  (EXP)
lead diacetate  (ISO)
medroxyprogesterone acetate  (ISO)
mercaptopurine  (ISO)
metacetamol  (EXP)
methotrexate  (ISO)
mifepristone  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP)
phenylmercury acetate  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
purine-6-thiol  (ISO)
raloxifene  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
succimer  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
tebuconazole  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
tremolite asbestos  (EXP)
tributylstannane  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
tungsten  (EXP)
valproic acid  (ISO)
vitamin D  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. Anwar R and Langlois S, Br J Haematol. 2009 Jun;146(1):118-20. doi: 10.1111/j.1365-2141.2009.07700.x. Epub 2009 Apr 27.
2. Boeri D, etal., Diabetes. 2001 Jun;50(6):1432-9.
3. Butt C, etal., Blood. 2003 Apr 15;101(8):3037-41. Epub 2002 Dec 12.
4. Catto AJ, etal., Blood. 1999 Feb 1;93(3):906-8.
5. Catto AJ, etal., Stroke. 1998 Apr;29(4):813-6.
6. Corral J, etal., Hematol J. 2000;1(4):269-73.
7. D'Argenio G, etal., Digestion 2001;63(4):220-8.
8. Elliott L, etal., Br J Haematol. 2007 May;137(3):262-7.
9. Gemmati D, etal., Am J Hematol. 2001 Jul;67(3):183-8.
10. Ivaskevicius V, etal., Ann Hematol. 2013 Jul;92(7):975-9. doi: 10.1007/s00277-013-1724-2. Epub 2013 Mar 19.
11. Ivaskevicius V, etal., Haematologica. 2010 Jun;95(6):956-62. doi: 10.3324/haematol.2009.017210. Epub 2010 Feb 23.
12. Katona E, etal., Haemophilia. 2014 Jan;20(1):114-20. doi: 10.1111/hae.12267. Epub 2013 Oct 1.
13. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
14. Kiss F, etal., Thromb Haemost. 2006 Aug;96(2):176-82.
15. Koseki-Kuno S, etal., Blood. 2003 Dec 15;102(13):4410-2. Epub 2003 Aug 21.
16. Kucher N, etal., Thromb Haemost. 2003 Sep;90(3):434-8.
17. Lauer P, etal., Thromb Haemost. 2002 Dec;88(6):967-74.
18. Louhichi N, etal., Ann Hematol. 2010 May;89(5):499-504. doi: 10.1007/s00277-009-0863-y. Epub 2009 Nov 24.
19. MGD data from the GO Consortium
20. MGD IEA
21. Mikkola H, etal., Blood. 1994 Jul 15;84(2):517-25.
22. Mosesson MW J Thromb Haemost. 2005 Aug;3(8):1894-904.
23. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
24. OMIM Disease Annotation Pipeline
25. Oshitani N, etal., Am J Gastroenterol. 1995 Jul;90(7):1116-8.
26. Pipeline to import KEGG annotations from KEGG into RGD
27. Pipeline to import SMPDB annotations from SMPDB into RGD
28. Reiner AP, etal., Stroke. 2001 Nov;32(11):2580-6.
29. Renner W, etal., Int Angiol. 2002 Mar;21(1):53-7.
30. RGD automated import pipeline
31. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
32. RGD automated import pipeline for gene-chemical interactions
33. Song JW, etal., Yonsei Med J. 2006 Apr 30;47(2):196-200.
34. Tsujimoto I, etal., Am J Pathol. 2011 Dec;179(6):3011-9. doi: 10.1016/j.ajpath.2011.08.037. Epub 2011 Oct 19.
35. Van Hylckama Vlieg A, etal., Br J Haematol. 2002 Oct;119(1):169-75.
36. Wang W, etal., J Hum Genet. 2011 Jun;56(6):460-3. doi: 10.1038/jhg.2011.41. Epub 2011 Apr 21.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12038633   PMID:12477932   PMID:14681479   PMID:15131115   PMID:15489334   PMID:15507206   PMID:16105983   PMID:16113836  
PMID:16141072   PMID:16141073   PMID:16368540   PMID:16469487   PMID:16505171   PMID:17183677   PMID:17341477   PMID:17379832   PMID:18224415   PMID:18278192   PMID:18315549   PMID:18544639  
PMID:18594942   PMID:19996413   PMID:20086247   PMID:20810110   PMID:21267068   PMID:21283799   PMID:21613262   PMID:21873635   PMID:21959563   PMID:22045386   PMID:22159717   PMID:22272319  
PMID:22967998   PMID:23075332   PMID:24194600   PMID:24934257   PMID:24983320   PMID:25336631   PMID:25460579   PMID:25680676   PMID:26018251   PMID:26098303   PMID:26098308   PMID:26238780  
PMID:26324704   PMID:26743168   PMID:26921287   PMID:27302551   PMID:27338836   PMID:27561317   PMID:27626380   PMID:27759118   PMID:28071719   PMID:28387755   PMID:28596376   PMID:28737512  
PMID:30550785   PMID:31351040   PMID:31786225   PMID:31874419   PMID:32325033   PMID:32678423  


Genomics

Comparative Map Data
F13a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,051,150 - 37,234,220 (-)NCBIGRCm39mm39
GRCm39 Ensembl1337,051,152 - 37,234,220 (-)Ensembl
GRCm381336,867,178 - 37,050,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1336,867,178 - 37,050,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371336,959,047 - 37,142,113 (-)NCBIGRCm37mm9NCBIm37
MGSCv361336,874,653 - 37,056,670 (-)NCBImm8
Celera1337,983,710 - 38,163,470 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
F13A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl66,144,084 - 6,321,013 (-)EnsemblGRCh38hg38GRCh38
GRCh3866,144,084 - 6,320,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3766,144,317 - 6,320,895 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3666,089,310 - 6,265,923 (-)NCBINCBI36hg18NCBI36
Build 3466,089,316 - 6,265,901NCBI
Celera67,372,733 - 7,550,578 (-)NCBI
Cytogenetic Map6p25.1NCBI
HuRef66,020,217 - 6,197,010 (-)NCBIHuRef
CHM1_166,146,854 - 6,323,031 (-)NCBICHM1_1
F13a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21727,815,723 - 27,992,494 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1728,504,623 - 28,680,362 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01728,504,650 - 28,680,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01730,406,396 - 30,581,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41734,093,525 - 34,270,498 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11734,096,401 - 34,272,682 (+)NCBI
Celera1727,443,244 - 27,619,724 (+)NCBICelera
Cytogenetic Map17p12NCBI
F13a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554657,444,118 - 7,617,366 (+)NCBIChiLan1.0ChiLan1.0
F13A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.166,159,012 - 6,337,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl66,157,926 - 6,513,961 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v065,978,505 - 6,156,705 (-)NCBIMhudiblu_PPA_v0panPan3
F13A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,186,750 - 6,347,522 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,187,235 - 6,349,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha356,191,814 - 6,354,808 (-)NCBI
ROS_Cfam_1.0356,267,724 - 6,430,557 (-)NCBI
UMICH_Zoey_3.1356,122,455 - 6,285,137 (-)NCBI
UNSW_CanFamBas_1.0356,148,410 - 6,311,467 (-)NCBI
UU_Cfam_GSD_1.0357,481,872 - 7,644,350 (-)NCBI
F13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,930,084 - 18,091,733 (+)NCBI
SpeTri2.0NW_0049365346,199,066 - 6,360,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F13A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl73,751,291 - 3,900,765 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.173,751,290 - 3,900,797 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.273,952,957 - 4,102,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F13A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11765,885,498 - 66,040,026 (+)NCBI
ChlSab1.1 Ensembl1765,885,658 - 66,040,040 (+)Ensembl
Vero_WHO_p1.0NW_0236660446,090,570 - 6,385,150 (-)NCBI
F13a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475619,103,064 - 19,259,632 (+)NCBI

Position Markers
AI462306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381336,867,343 - 36,867,492UniSTSGRCm38
MGSCv371336,959,212 - 36,959,361UniSTSGRCm37
Celera1337,983,875 - 37,984,024UniSTS
Cytogenetic Map13A3.3UniSTS
Whitehead/MRC_RH13383.67UniSTS
D13Mit266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381336,941,505 - 36,941,635UniSTSGRCm38
MGSCv371337,033,374 - 37,033,504UniSTSGRCm37
Celera1338,054,515 - 38,054,645UniSTS
Cytogenetic Map13A3.3UniSTS
cM Map1316.0UniSTS
Whitehead Genetic137.7UniSTS
Whitehead/MRC_RH13383.67UniSTS
Whitehead_YAC13 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13329344237293650Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13329344237293650Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13329344237293650Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13343134237431502Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13349603037496173Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13390000075900000Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13436402652947604Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131699396044765084Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131701492338763430Mouse
1301880Hypt_mhypertension (mouse)Not determined131797280951972941Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131887692552877067Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131940000053400000Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132029344259673791Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20293442112761890Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132043134255572704Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132043134272237070Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132056296354563080Mouse
1558844Lith15_mlithogenic gene 15 (mouse)Not determined132176326255763430Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2568305359683053Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132776499361765084Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132805696662057068Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132806390362064039Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132806390362064039Mouse
10755517Chol15_mcholesterol 15 (mouse)133081599164815991Mouse
10755533Chol18_mcholesterol 18 (mouse)133081599164815991Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133097563464975634Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133119126065191260Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133476790768768045Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133587692596102654Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133594749469947604Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133594749469947604Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133599078469990868Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:992
Count of miRNA genes:334
Interacting mature miRNAs:404
Transcripts:ENSMUST00000037491, ENSMUST00000164727
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC168059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02098443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV249730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM239113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000037491   ⟹   ENSMUSP00000048667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1336,867,178 - 37,049,288 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164727   ⟹   ENSMUSP00000128316
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1336,867,178 - 37,050,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1336,969,646 - 37,049,213 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224783
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1336,938,916 - 37,049,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1336,967,797 - 37,049,213 (-)Ensembl
RefSeq Acc Id: NM_001166391   ⟹   NP_001159863
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391337,051,152 - 37,234,220 (-)NCBI
GRCm381336,867,178 - 37,050,244 (-)ENTREZGENE
MGSCv371336,959,047 - 37,142,113 (-)RGD
Celera1337,983,710 - 38,163,470 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028784   ⟹   NP_083060
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391337,051,152 - 37,233,189 (-)NCBI
GRCm381336,867,178 - 37,049,213 (-)NCBI
MGSCv371336,959,047 - 37,142,113 (-)RGD
Celera1337,983,710 - 38,163,470 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158197   ⟹   XP_036014090
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391337,051,150 - 37,154,816 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_083060   ⟸   NM_028784
- UniProtKB: Q8BH61 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159863   ⟸   NM_001166391
- UniProtKB: Q8BH61 (UniProtKB/Swiss-Prot),   Q3V3W7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128316   ⟸   ENSMUST00000164727
RefSeq Acc Id: ENSMUSP00000048667   ⟸   ENSMUST00000037491
RefSeq Acc Id: XP_036014090   ⟸   XM_036158197
- Peptide Label: isoform X1
Protein Domains
TGc   Transglut_N   WHEP-TRS

Promoters
RGD ID:8680108
Promoter ID:EPDNEW_M18085
Type:multiple initiation site
Name:F13a1_1
Description:Mus musculus coagulation factor XIII, A1 subunit , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18086  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381337,049,213 - 37,049,273EPDNEW
RGD ID:8680110
Promoter ID:EPDNEW_M18086
Type:initiation region
Name:F13a1_2
Description:Mus musculus coagulation factor XIII, A1 subunit , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18085  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381337,050,244 - 37,050,304EPDNEW
RGD ID:6823875
Promoter ID:MM_KWN:13829
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:ENSMUST00000099580,   NM_028784,   UC007QCP.1,   UC007QCQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361337,140,631 - 37,141,131 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921395 AgrOrtholog
Ensembl Genes ENSMUSG00000039109 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000048667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128316 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037491 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000164727 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.260.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Factor_XIII_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase_animal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglutaminase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
KEGG Report mmu:74145 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921395 ENTREZGENE
NCBI Gene 74145 ENTREZGENE
PANTHER PTHR11590:SF42 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Transglut_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglut_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transglut_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
PhenoGen F13a1 PhenoGen
PIRSF TGM_EBP42 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TRANSGLUTAMINASES UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WHEP_TRS_1 UniProtKB/TrEMBL
  WHEP_TRS_2 UniProtKB/TrEMBL
SMART TGc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
Superfamily-SCOP SSF49309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F13A_MOUSE UniProtKB/Swiss-Prot
  Q3TBF3_MOUSE UniProtKB/TrEMBL
  Q3TC79_MOUSE UniProtKB/TrEMBL
  Q3TDG1_MOUSE UniProtKB/TrEMBL
  Q3TQH1_MOUSE UniProtKB/TrEMBL
  Q3V3W7 ENTREZGENE, UniProtKB/TrEMBL
  Q8BH61 ENTREZGENE
  Q9DBT1_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3TNF9 UniProtKB/Swiss-Prot
  Q8BIP2 UniProtKB/Swiss-Prot