Idh3b (isocitrate dehydrogenase 3 (NAD+) beta) - Rat Genome Database

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Gene: Idh3b (isocitrate dehydrogenase 3 (NAD+) beta) Mus musculus
Analyze
Symbol: Idh3b
Name: isocitrate dehydrogenase 3 (NAD+) beta
RGD ID: 1550265
MGI Page MGI
Description: Predicted to enable NAD binding activity; magnesium ion binding activity; and oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Located in mitochondrion. Part of isocitrate dehydrogenase complex (NAD+). Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in retinitis pigmentosa 46. Orthologous to human IDH3B (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C78231; isocitrate dehydrogenase 3 beta; isocitrate dehydrogenase 3, beta subunit; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial; N14A tumor-related protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm21042  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,121,229 - 130,126,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,121,229 - 130,126,467 (-)EnsemblGRCm39 Ensembl
GRCm382130,279,309 - 130,284,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,279,309 - 130,284,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,105,045 - 130,110,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362129,970,753 - 129,983,751 (-)NCBIMGSCv36mm8
Celera2131,503,716 - 131,508,858 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. Preparation and properties of mitochondria derived from synaptosomes. Lai JC and Clark JB, Biochem J. 1976 Feb 15;154(2):423-32.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14555658   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16959763   PMID:17626619   PMID:18614015   PMID:21677750   PMID:21725061   PMID:21873635   PMID:22083510   PMID:27160897   PMID:27215380   PMID:28245920   PMID:28378742   PMID:29222160  
PMID:29676259   PMID:30478029   PMID:30550785   PMID:30562941   PMID:35985423   PMID:36114006   PMID:37142655   PMID:38355793   PMID:38679634  


Genomics

Comparative Map Data
Idh3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,121,229 - 130,126,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,121,229 - 130,126,467 (-)EnsemblGRCm39 Ensembl
GRCm382130,279,309 - 130,284,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,279,309 - 130,284,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,105,045 - 130,110,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362129,970,753 - 129,983,751 (-)NCBIMGSCv36mm8
Celera2131,503,716 - 131,508,858 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
IDH3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,658,395 - 2,664,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,658,393 - 2,664,219 (-)EnsemblGRCh38hg38GRCh38
GRCh37202,639,041 - 2,644,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,587,041 - 2,592,843 (-)NCBINCBI36Build 36hg18NCBI36
Build 34202,587,042 - 2,592,843NCBI
Celera202,703,504 - 2,709,306 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,588,269 - 2,594,156 (-)NCBIHuRef
CHM1_1202,639,448 - 2,645,272 (-)NCBICHM1_1
T2T-CHM13v2.0202,688,862 - 2,694,697 (-)NCBIT2T-CHM13v2.0
Idh3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,934,971 - 137,940,275 (-)NCBIGRCr8
mRatBN7.23117,481,845 - 117,486,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,481,845 - 117,486,982 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,379,896 - 121,384,925 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03129,975,515 - 129,980,544 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,636,012 - 127,641,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,808,564 - 122,813,638 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,808,564 - 122,813,583 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,308,279 - 129,313,315 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43117,892,614 - 117,897,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13117,798,468 - 117,800,065 (-)NCBI
Celera3116,298,150 - 116,303,169 (-)NCBICelera
Cytogenetic Map3q36NCBI
Idh3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541513,643,168 - 13,649,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541513,642,804 - 13,649,023 (-)NCBIChiLan1.0ChiLan1.0
IDH3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,647,477 - 3,677,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1203,644,302 - 3,674,378 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0202,766,598 - 2,772,571 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,529,510 - 2,559,894 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl202,529,510 - 2,535,570 (-)Ensemblpanpan1.1panPan2
IDH3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,556,437 - 18,561,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,556,508 - 18,561,391 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2418,385,740 - 18,390,707 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,014,265 - 19,019,181 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,014,285 - 19,019,174 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,570,449 - 18,575,416 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,680,753 - 18,685,668 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,009,851 - 19,014,767 (+)NCBIUU_Cfam_GSD_1.0
Idh3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648516,033,128 - 16,042,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648516,033,287 - 16,038,097 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IDH3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,955,101 - 32,960,104 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,955,061 - 32,960,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,446,330 - 37,451,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IDH3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,875,991 - 53,882,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,875,390 - 53,881,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666087292,746 - 299,180 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Idh3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247413,808,784 - 3,814,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247413,808,436 - 3,814,239 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:256
Interacting mature miRNAs:269
Transcripts:ENSMUST00000028892, ENSMUST00000124868, ENSMUST00000149843, ENSMUST00000184538
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
Idh3b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F3UniSTS
cM Map2 UniSTS
RH126329  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,279,324 - 130,279,691UniSTSGRCm38
MGSCv372130,105,060 - 130,105,427UniSTSGRCm37
Celera2131,503,731 - 131,504,098UniSTS
Cytogenetic Map2F3UniSTS
Whitehead/MRC_RH21616.4UniSTS
MARC_26079-26080:1032790967:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,279,664 - 130,280,515UniSTSGRCm38
MGSCv372130,105,400 - 130,106,251UniSTSGRCm37
Celera2131,504,071 - 131,504,922UniSTS
Cytogenetic Map2F3UniSTS
MARC_26128-26129:1030370563:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,280,505 - 130,281,064UniSTSGRCm38
MGSCv372130,106,241 - 130,106,800UniSTSGRCm37
Celera2131,504,912 - 131,505,471UniSTS
Cytogenetic Map2F3UniSTS
BB255728  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,292,140 - 130,292,243UniSTSGRCm38
MGSCv372130,117,876 - 130,117,979UniSTSGRCm37
Celera2131,516,547 - 131,516,650UniSTS
Whitehead/MRC_RH21613.07UniSTS
RH78746  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,279,675 - 130,280,524UniSTSGRCm38
MGSCv372130,105,411 - 130,106,260UniSTSGRCm37
Celera2131,504,082 - 131,504,931UniSTS
Cytogenetic Map2F3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000028892   ⟹   ENSMUSP00000028892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,121,229 - 130,126,467 (-)Ensembl
GRCm38.p6 Ensembl2130,279,309 - 130,284,547 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,125,583 - 130,126,335 (-)Ensembl
GRCm38.p6 Ensembl2130,283,663 - 130,284,415 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,124,065 - 130,126,354 (-)Ensembl
GRCm38.p6 Ensembl2130,282,145 - 130,284,434 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184538   ⟹   ENSMUSP00000139331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,121,233 - 130,122,471 (-)Ensembl
GRCm38.p6 Ensembl2130,279,313 - 130,280,551 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239288   ⟹   ENSMUSP00000159209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,121,237 - 130,126,381 (-)Ensembl
GRCm38.p6 Ensembl2130,279,317 - 130,284,461 (-)Ensembl
RefSeq Acc Id: NM_001362752   ⟹   NP_001349681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,121,229 - 130,126,371 (-)NCBI
GRCm382130,279,309 - 130,284,451 (-)NCBI
Sequence:
RefSeq Acc Id: NM_130884   ⟹   NP_570954
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,121,229 - 130,126,371 (-)NCBI
GRCm382130,279,309 - 130,284,451 (-)NCBI
MGSCv372130,105,045 - 130,110,187 (-)RGD
Celera2131,503,716 - 131,508,858 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_570954   ⟸   NM_130884
- Peptide Label: isoform 1
- UniProtKB: Q91VA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349681   ⟸   NM_001362752
- Peptide Label: isoform 2
- UniProtKB: A0A668KL51 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000139331   ⟸   ENSMUST00000184538
Ensembl Acc Id: ENSMUSP00000159209   ⟸   ENSMUST00000239288
Ensembl Acc Id: ENSMUSP00000028892   ⟸   ENSMUST00000028892
Protein Domains
Isopropylmalate dehydrogenase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91VA7-F1-model_v2 AlphaFold Q91VA7 1-384 view protein structure

Promoters
RGD ID:6831606
Promoter ID:MM_KWN:31723
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Liver,   MEF_B6
Transcripts:OTTMUST00000036854
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362130,105,826 - 130,107,277 (-)MPROMDB
RGD ID:6847662
Promoter ID:MM_ACW:29751
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2
Transcripts:IDH3B.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362130,107,096 - 130,107,596 (-)MPROMDB
RGD ID:6831607
Promoter ID:MM_KWN:31724
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000036851,   OTTMUST00000036852,   OTTMUST00000036853
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362130,109,936 - 130,110,436 (-)MPROMDB
RGD ID:6878740
Promoter ID:EPDNEW_M2821
Type:multiple initiation site
Name:Idh3b_1
Description:Mus musculus isocitrate dehydrogenase 3 (NAD+) beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382130,284,428 - 130,284,488EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2158650 AgrOrtholog
Ensembl Genes ENSMUSG00000027406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028892 ENTREZGENE
  ENSMUST00000028892.11 UniProtKB/TrEMBL
  ENSMUST00000184538.2 UniProtKB/TrEMBL
  ENSMUST00000239288 ENTREZGENE
  ENSMUST00000239288.2 UniProtKB/TrEMBL
Gene3D-CATH Isopropylmalate Dehydrogenase UniProtKB/TrEMBL
InterPro IsoCit/isopropylmalate_DH_CS UniProtKB/TrEMBL
  Isocitrate_DH_NAD UniProtKB/TrEMBL
  IsoPropMal-DH-like_dom UniProtKB/TrEMBL
MGD MGI:2158650 ENTREZGENE
NCBI Gene 170718 ENTREZGENE
PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE UniProtKB/TrEMBL
  ISOCITRATE DEHYDROGENASE [NAD] SUBUNIT BETA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Iso_dh UniProtKB/TrEMBL
PhenoGen Idh3b PhenoGen
PROSITE IDH_IMDH UniProtKB/TrEMBL
SMART Iso_dh UniProtKB/TrEMBL
Superfamily-SCOP Isocitrate/Isopropylmalate dehydrogenase-like UniProtKB/TrEMBL
UniProt A0A668KL51 ENTREZGENE, UniProtKB/TrEMBL
  Q91VA7 ENTREZGENE, UniProtKB/TrEMBL
  V9GXV0_MOUSE UniProtKB/TrEMBL