Tnfrsf12a (tumor necrosis factor receptor superfamily, member 12a) - Rat Genome Database

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Gene: Tnfrsf12a (tumor necrosis factor receptor superfamily, member 12a) Mus musculus
Analyze
Symbol: Tnfrsf12a
Name: tumor necrosis factor receptor superfamily, member 12a
RGD ID: 1550230
MGI Page MGI
Description: Involved in regulation of angiogenesis. Acts upstream of or within extrinsic apoptotic signaling pathway; positive regulation of axon extension; and substrate-dependent cell migration, cell attachment to substrate. Located in cell surface; plasma membrane; and ruffle. Is expressed in several structures, including adrenal medulla; genitourinary system; heart; limb long bone; and molar. Orthologous to human TNFRSF12A (TNF receptor superfamily member 12A); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 1-chloro-2,4-dinitrobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI255180; C87282; FGF-inducible 14; fibroblast growth factor regulated protein 2; fibroblast growth factor-inducible immediate-early response protein 14; fibroblast growth factor-regulated protein 2; Fn1; Fn14; HPIP; tumor necrosis factor receptor superfamily member 12A; Twea; TWEAK; TWEAK-R; tweak-receptor; TweakR; type I transmembrane protein Fn14
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391723,894,419 - 23,896,423 (-)NCBIGRCm39mm39
GRCm39 Ensembl1723,894,419 - 23,896,442 (-)Ensembl
GRCm381723,675,445 - 23,677,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,675,445 - 23,677,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv371723,812,412 - 23,814,416 (-)NCBIGRCm37mm9NCBIm37
MGSCv361723,403,067 - 23,405,066 (-)NCBImm8
Celera1724,181,651 - 24,183,653 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-citrinin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-bromo-2'-deoxyuridine  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arachidonic acid  (ISO)
aripiprazole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
chloropicrin  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
ciglitazone  (ISO)
cisplatin  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
etoposide  (ISO)
fenamidone  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (EXP,ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
mechlorethamine  (EXP)
melamine  (ISO)
menadione  (ISO)
mercury dichloride  (ISO)
metacetamol  (EXP)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
microcystin-LR  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naphthalene  (EXP)
nickel atom  (ISO)
nickel sulfate  (EXP)
ochratoxin A  (ISO)
ofloxacin  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentanal  (ISO)
pentane-2,3-dione  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phosgene  (EXP)
potassium chromate  (ISO)
progesterone  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
ranitidine  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
torcetrapib  (ISO)
triacsin C  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10551889   PMID:10751351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11728344   PMID:12477932   PMID:12529173   PMID:12794080   PMID:12821115  
PMID:14573547   PMID:15489334   PMID:16110324   PMID:16141072   PMID:16141073   PMID:16424220   PMID:16526941   PMID:16602821   PMID:17003819   PMID:17015433   PMID:17124496   PMID:17383968  
PMID:17803219   PMID:17981048   PMID:18025243   PMID:18287559   PMID:19109961   PMID:19349318   PMID:19573558   PMID:20068578   PMID:20308426   PMID:20810696   PMID:20927042   PMID:20955770  
PMID:21040786   PMID:21267068   PMID:21873635   PMID:22081603   PMID:22394384   PMID:22982296   PMID:23325387   PMID:23342071   PMID:23462911   PMID:23497038   PMID:23576749   PMID:23578591  
PMID:23764551   PMID:23991053   PMID:23999007   PMID:24037740   PMID:24327607   PMID:24408972   PMID:24416188   PMID:24446436   PMID:24652288   PMID:24680686   PMID:24895120   PMID:25042397  
PMID:25504044   PMID:25524063   PMID:25826425   PMID:25911200   PMID:26192438   PMID:26808775   PMID:27305603   PMID:27634763   PMID:28428709   PMID:28530223   PMID:28562476   PMID:29588419  
PMID:29706927   PMID:29971943   PMID:29981796   PMID:30033152   PMID:30038329   PMID:30081003   PMID:30648117   PMID:30976982   PMID:31017010   PMID:31212034   PMID:31515807   PMID:31679818  
PMID:32217132   PMID:32542768   PMID:32670778   PMID:32979359   PMID:33526652   PMID:33578738  


Genomics

Comparative Map Data
Tnfrsf12a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391723,894,419 - 23,896,423 (-)NCBIGRCm39mm39
GRCm39 Ensembl1723,894,419 - 23,896,442 (-)Ensembl
GRCm381723,675,445 - 23,677,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,675,445 - 23,677,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv371723,812,412 - 23,814,416 (-)NCBIGRCm37mm9NCBIm37
MGSCv361723,403,067 - 23,405,066 (-)NCBImm8
Celera1724,181,651 - 24,183,653 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
TNFRSF12A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl163,018,445 - 3,022,383 (+)EnsemblGRCh38hg38GRCh38
GRCh38163,020,368 - 3,022,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37163,070,369 - 3,072,384 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,010,361 - 3,012,385 (+)NCBINCBI36hg18NCBI36
Build 34163,010,360 - 3,012,382NCBI
Celera163,275,870 - 3,277,940 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef163,042,784 - 3,043,958 (+)NCBIHuRef
CHM1_1163,070,187 - 3,072,258 (+)NCBICHM1_1
Tnfrsf12a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21012,707,077 - 12,709,071 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1012,689,890 - 12,709,045 (-)Ensembl
Rnor_6.01012,995,904 - 12,997,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,995,904 - 12,997,930 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,818,949 - 12,820,975 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,940,334 - 12,942,343 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11012,940,333 - 12,942,343 (-)NCBI
Celera1012,402,383 - 12,404,393 (-)NCBICelera
Cytogenetic Map10q12NCBI
Tnfrsf12a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,320,159 - 14,322,146 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,320,159 - 14,322,146 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF12A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1163,134,577 - 3,136,581 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,134,577 - 3,136,581 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0161,962,179 - 1,964,223 (+)NCBIMhudiblu_PPA_v0panPan3
TNFRSF12A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,166,160 - 38,168,189 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,166,160 - 38,168,189 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,406,703 - 39,408,732 (-)NCBI
ROS_Cfam_1.0638,476,762 - 38,478,791 (-)NCBI
UMICH_Zoey_3.1638,162,557 - 38,164,586 (-)NCBI
UNSW_CanFamBas_1.0638,135,059 - 38,137,088 (-)NCBI
UU_Cfam_GSD_1.0638,610,821 - 38,612,857 (-)NCBI
Tnfrsf12a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,558,357 - 105,560,277 (+)NCBI
SpeTri2.0NW_0049366941,149,169 - 1,151,098 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF12A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,166,294 - 39,168,303 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,166,288 - 39,168,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,531,414 - 40,533,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF12A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,763,633 - 2,765,692 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl52,763,714 - 2,765,137 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606828,066,705 - 28,068,765 (-)NCBIVero_WHO_p1.0

Position Markers
C87282  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381723,675,524 - 23,675,639UniSTSGRCm38
MGSCv371723,812,491 - 23,812,606UniSTSGRCm37
Celera1724,181,730 - 24,181,845UniSTS
Cytogenetic Map17A3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172268105525502498Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:376
Count of miRNA genes:173
Interacting mature miRNAs:178
Transcripts:ENSMUST00000024698, ENSMUST00000167059
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000024698   ⟹   ENSMUSP00000024698
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,894,419 - 23,896,442 (-)Ensembl
GRCm38.p6 Ensembl1723,675,445 - 23,677,468 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167059   ⟹   ENSMUSP00000131574
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,894,619 - 23,896,403 (-)Ensembl
GRCm38.p6 Ensembl1723,675,645 - 23,677,429 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233040
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,894,683 - 23,895,527 (-)Ensembl
GRCm38.p6 Ensembl1723,675,709 - 23,676,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233428   ⟹   ENSMUSP00000156767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,894,797 - 23,896,394 (-)Ensembl
GRCm38.p6 Ensembl1723,675,823 - 23,677,420 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,895,587 - 23,896,401 (-)Ensembl
GRCm38.p6 Ensembl1723,676,613 - 23,677,427 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233814   ⟹   ENSMUSP00000156786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1723,894,467 - 23,896,401 (-)Ensembl
GRCm38.p6 Ensembl1723,675,493 - 23,677,427 (-)Ensembl
RefSeq Acc Id: NM_001161746   ⟹   NP_001155218
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391723,894,419 - 23,896,423 (-)NCBI
GRCm381723,675,445 - 23,677,449 (-)ENTREZGENE
MGSCv371723,812,412 - 23,814,416 (-)RGD
Celera1724,181,651 - 24,183,653 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013749   ⟹   NP_038777
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391723,894,419 - 23,896,423 (-)NCBI
GRCm381723,675,445 - 23,677,449 (-)ENTREZGENE
MGSCv371723,812,412 - 23,814,416 (-)RGD
Celera1724,181,651 - 24,183,653 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038777   ⟸   NM_013749
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9CR75 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001155218   ⟸   NM_001161746
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9CR75 (UniProtKB/Swiss-Prot),   E9PZT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000156767   ⟸   ENSMUST00000233428
RefSeq Acc Id: ENSMUSP00000156786   ⟸   ENSMUST00000233814
RefSeq Acc Id: ENSMUSP00000131574   ⟸   ENSMUST00000167059
RefSeq Acc Id: ENSMUSP00000024698   ⟸   ENSMUST00000024698

Promoters
RGD ID:13674938
Promoter ID:EPDNEW_M21618
Type:initiation region
Name:Tnfrsf12a_1
Description:Mus musculus tumor necrosis factor receptor superfamily, member12a , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381723,677,445 - 23,677,505EPDNEW
RGD ID:6848694
Promoter ID:MM_TRO:4244
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:MTR005143.17.499.2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361723,813,051 - 23,813,842 (-)MPROMDB
RGD ID:6828814
Promoter ID:MM_KWN:22440
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001161746,   UC008ASV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361723,814,206 - 23,814,706 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351484 AgrOrtholog
Ensembl Genes ENSMUSG00000023905 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000024698 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000131574 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000156767 UniProtKB/TrEMBL
  ENSMUSP00000156786 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024698 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167059 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000233428 UniProtKB/TrEMBL
  ENSMUST00000233814 UniProtKB/TrEMBL
InterPro TNFR_12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:27279 UniProtKB/Swiss-Prot
MGD MGI:1351484 ENTREZGENE
NCBI Gene 27279 ENTREZGENE
PANTHER PTHR32037 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam stn_TNFRSF12A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnfrsf12a PhenoGen
PRINTS TNFACTORR12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3B2W475_MOUSE UniProtKB/TrEMBL
  A0A3B2W7Y2_MOUSE UniProtKB/TrEMBL
  E9PZT5 ENTREZGENE, UniProtKB/TrEMBL
  Q9CR75 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TVG8 UniProtKB/Swiss-Prot
  Q9QZW3 UniProtKB/Swiss-Prot