Trrap (transformation/transcription domain-associated protein) - Rat Genome Database

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Gene: Trrap (transformation/transcription domain-associated protein) Mus musculus
Analyze
Symbol: Trrap
Name: transformation/transcription domain-associated protein
RGD ID: 1550217
MGI Page MGI
Description: Enables transcription coactivator activity. Acts upstream of or within regulation of DNA-templated transcription. Part of SAGA complex and transcription regulator complex. Is expressed in several structures, including cerebral cortex; cranial ganglion; submandibular gland primordium; tooth; and vibrissa. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 75. Orthologous to human TRRAP (transformation/transcription domain associated protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI481500; tra1 homolog; transactivation/transformation-domain associated protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,704,547 - 144,796,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,704,542 - 144,796,588 (+)EnsemblGRCm39 Ensembl
GRCm385144,767,737 - 144,859,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,767,732 - 144,859,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,529,661 - 145,620,642 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,021,259 - 145,113,300 (+)NCBIMGSCv36mm8
Celera5141,760,268 - 141,850,816 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map584.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
7. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:9674425   PMID:9880483   PMID:10349636   PMID:10373431   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11406595   PMID:11544477   PMID:11564863   PMID:12464179  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14627834   PMID:14966270   PMID:15489334   PMID:15549134   PMID:16141072   PMID:16141073   PMID:16341205   PMID:16494529  
PMID:17694077   PMID:18206972   PMID:18799693   PMID:18973680   PMID:19114550   PMID:19282473   PMID:19880447   PMID:20362541   PMID:20508642   PMID:20946988   PMID:21267068   PMID:21319192  
PMID:21677750   PMID:21873635   PMID:22496869   PMID:22794259   PMID:23362228   PMID:23395962   PMID:23892456   PMID:24302573   PMID:24457600   PMID:24675885   PMID:24792116   PMID:27153538  
PMID:28378742   PMID:28893950   PMID:30333137   PMID:30973865   PMID:32325033   PMID:33594975   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Trrap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,704,547 - 144,796,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,704,542 - 144,796,588 (+)EnsemblGRCm39 Ensembl
GRCm385144,767,737 - 144,859,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,767,732 - 144,859,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,529,661 - 145,620,642 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,021,259 - 145,113,300 (+)NCBIMGSCv36mm8
Celera5141,760,268 - 141,850,816 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map584.77NCBI
TRRAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,878,532 - 99,013,241 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,877,933 - 99,050,831 (+)EnsemblGRCh38hg38GRCh38
GRCh37798,476,155 - 98,610,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,314,049 - 98,448,775 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,120,763 - 98,255,490NCBI
Celera793,204,993 - 93,339,694 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,109,006 - 93,243,743 (+)NCBIHuRef
CHM1_1798,406,555 - 98,541,284 (+)NCBICHM1_1
T2T-CHM13v2.07100,111,864 - 100,246,554 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2797,832,168 - 97,966,887 (+)NCBI
Trrap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,851,758 - 14,941,444 (-)NCBIGRCr8
mRatBN7.2129,738,006 - 9,827,708 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,738,006 - 9,827,674 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,540,552 - 10,630,448 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,163,764 - 11,253,661 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,187,607 - 10,277,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,537,950 - 11,627,563 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,537,950 - 11,627,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,602,590 - 13,692,085 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,054,055 - 10,143,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,084,790 - 10,170,560 (-)NCBI
Celera1211,542,099 - 11,631,737 (-)NCBICelera
Cytogenetic Map12p11NCBI
Trrap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546014,644,133 - 14,760,787 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546014,641,891 - 14,761,641 (+)NCBIChiLan1.0ChiLan1.0
TRRAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26116,731,559 - 116,867,814 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,996,204 - 165,132,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0790,845,518 - 90,981,700 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,351,320 - 104,486,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,351,320 - 104,486,722 (+)Ensemblpanpan1.1panPan2
TRRAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,519,734 - 10,635,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,519,711 - 10,632,776 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,145,756 - 12,261,165 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,519,773 - 10,632,776 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,519,797 - 10,635,242 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,389,520 - 10,504,779 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,367,972 - 10,481,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,602,017 - 10,717,277 (-)NCBIUU_Cfam_GSD_1.0
Trrap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,585,033 - 138,699,329 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,248,320 - 1,359,473 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,245,926 - 1,360,226 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRRAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,909,022 - 6,029,333 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,903,205 - 6,029,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,919,254 - 5,939,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRRAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,154,962 - 14,289,110 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2814,154,960 - 14,286,512 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,004,827 - 2,140,405 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trrap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,349,568 - 32,472,308 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,349,521 - 32,472,240 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trrap
3611 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3629
Count of miRNA genes:710
Interacting mature miRNAs:889
Transcripts:ENSMUST00000038980, ENSMUST00000094120, ENSMUST00000100467, ENSMUST00000124909, ENSMUST00000128550, ENSMUST00000132347, ENSMUST00000132925, ENSMUST00000136379, ENSMUST00000138589, ENSMUST00000143357
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse

Markers in Region
MHAa54h11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385144,805,607 - 144,805,773UniSTSGRCm38
MGSCv375145,566,476 - 145,566,642UniSTSGRCm37
Celera5141,797,103 - 141,797,269UniSTS
Cytogenetic Map5G2UniSTS
Whitehead_YAC5 UniSTS
AI481500  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385144,859,470 - 144,859,554UniSTSGRCm38
MGSCv375145,620,339 - 145,620,423UniSTSGRCm37
Celera5141,850,513 - 141,850,597UniSTS
Cytogenetic Map5G2UniSTS
Whitehead/MRC_RH51731.58UniSTS
UniSTS:235363  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385144,856,106 - 144,856,317UniSTSGRCm38
MGSCv375145,616,975 - 145,617,186UniSTSGRCm37
Celera5141,847,304 - 141,847,515UniSTS
Cytogenetic Map5G2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000038980   ⟹   ENSMUSP00000042544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,707,899 - 144,796,561 (+)Ensembl
GRCm38.p6 Ensembl5144,771,089 - 144,859,751 (+)Ensembl
RefSeq Acc Id: ENSMUST00000094120   ⟹   ENSMUSP00000091668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,707,899 - 144,796,586 (+)Ensembl
GRCm38.p6 Ensembl5144,771,089 - 144,859,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100467   ⟹   ENSMUSP00000098035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,705,604 - 144,796,588 (+)Ensembl
GRCm38.p6 Ensembl5144,768,794 - 144,859,778 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,775,795 - 144,777,254 (+)Ensembl
GRCm38.p6 Ensembl5144,838,985 - 144,840,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128550   ⟹   ENSMUSP00000115917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,705,354 - 144,713,938 (+)Ensembl
GRCm38.p6 Ensembl5144,768,544 - 144,777,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,741,539 - 144,771,321 (+)Ensembl
GRCm38.p6 Ensembl5144,804,729 - 144,834,511 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132925   ⟹   ENSMUSP00000122021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,722,335 - 144,796,586 (+)Ensembl
GRCm38.p6 Ensembl5144,785,525 - 144,859,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,704,902 - 144,724,717 (+)Ensembl
GRCm38.p6 Ensembl5144,768,092 - 144,787,907 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,794,086 - 144,796,153 (+)Ensembl
GRCm38.p6 Ensembl5144,857,276 - 144,859,343 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,756,608 - 144,759,920 (+)Ensembl
GRCm38.p6 Ensembl5144,819,798 - 144,823,110 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,728,269 - 144,730,461 (+)Ensembl
GRCm38.p6 Ensembl5144,791,459 - 144,793,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,704,542 - 144,705,501 (+)Ensembl
GRCm38.p6 Ensembl5144,767,732 - 144,768,691 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,748,841 - 144,750,592 (+)Ensembl
GRCm38.p6 Ensembl5144,812,031 - 144,813,782 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,792,393 - 144,796,587 (+)Ensembl
GRCm38.p6 Ensembl5144,855,583 - 144,859,777 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213013   ⟹   ENSMUSP00000148419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5144,707,960 - 144,796,586 (+)Ensembl
GRCm38.p6 Ensembl5144,771,150 - 144,859,776 (+)Ensembl
RefSeq Acc Id: NM_001081362   ⟹   NP_001074831
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,705,604 - 144,796,588 (+)NCBI
GRCm385144,768,794 - 144,859,778 (+)NCBI
MGSCv375145,529,661 - 145,620,642 (+)RGD
Celera5141,760,268 - 141,850,816 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504781   ⟹   XP_006504844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504782   ⟹   XP_006504845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504783   ⟹   XP_006504846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,705,584 - 144,796,588 (+)NCBI
GRCm385144,768,774 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504784   ⟹   XP_006504847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504785   ⟹   XP_006504848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504786   ⟹   XP_006504849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504787   ⟹   XP_006504850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504788   ⟹   XP_006504851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504789   ⟹   XP_006504852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504790   ⟹   XP_006504853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504792   ⟹   XP_006504855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,449 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504793   ⟹   XP_006504856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504794   ⟹   XP_006504857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,449 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504795   ⟹   XP_006504858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240999   ⟹   XP_011239301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320575   ⟹   XP_017176064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320576   ⟹   XP_017176065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320577   ⟹   XP_017176066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320578   ⟹   XP_017176067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,449 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254015   ⟹   XP_030109875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254016   ⟹   XP_030109876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,705,584 - 144,796,588 (+)NCBI
GRCm385144,768,774 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254018   ⟹   XP_030109878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164690   ⟹   XP_036020583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377189
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,859,778 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377190
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395144,704,547 - 144,796,588 (+)NCBI
GRCm385144,767,737 - 144,857,447 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001074831 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504844 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504845 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504846 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504847 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504848 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504849 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504850 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504851 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504852 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504853 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504855 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504856 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504857 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504858 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239301 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176064 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176065 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176066 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176067 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109875 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109876 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109878 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020583 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH29023 (Get FASTA)   NCBI Sequence Viewer  
  AAH50105 (Get FASTA)   NCBI Sequence Viewer  
  BAC26431 (Get FASTA)   NCBI Sequence Viewer  
  BAE28025 (Get FASTA)   NCBI Sequence Viewer  
  BAE39801 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000042544.7
  ENSMUSP00000091668.3
  ENSMUSP00000098035
  ENSMUSP00000098035.4
  ENSMUSP00000115917.2
  ENSMUSP00000122021
  ENSMUSP00000122021.2
  ENSMUSP00000148419
  ENSMUSP00000148419.2
GenBank Protein Q80YV3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001074831   ⟸   NM_001081362
- UniProtKB: E9QLK7 (UniProtKB/TrEMBL),   E9PZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504844   ⟸   XM_006504781
- Peptide Label: isoform X1
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504852   ⟸   XM_006504789
- Peptide Label: isoform X10
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504850   ⟸   XM_006504787
- Peptide Label: isoform X7
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504847   ⟸   XM_006504784
- Peptide Label: isoform X2
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504853   ⟸   XM_006504790
- Peptide Label: isoform X11
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504856   ⟸   XM_006504793
- Peptide Label: isoform X15
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504849   ⟸   XM_006504786
- Peptide Label: isoform X4
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504855   ⟸   XM_006504792
- Peptide Label: isoform X14
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504851   ⟸   XM_006504788
- Peptide Label: isoform X9
- UniProtKB: E9PZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504857   ⟸   XM_006504794
- Peptide Label: isoform X17
- UniProtKB: E9PZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504858   ⟸   XM_006504795
- Peptide Label: isoform X19
- UniProtKB: E9PZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504848   ⟸   XM_006504785
- Peptide Label: isoform X3
- UniProtKB: E9PWT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504845   ⟸   XM_006504782
- Peptide Label: isoform X1
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504846   ⟸   XM_006504783
- Peptide Label: isoform X1
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239301   ⟸   XM_011240999
- Peptide Label: isoform X6
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176065   ⟸   XM_017320576
- Peptide Label: isoform X13
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176064   ⟸   XM_017320575
- Peptide Label: isoform X5
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176066   ⟸   XM_017320577
- Peptide Label: isoform X16
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176067   ⟸   XM_017320578
- Peptide Label: isoform X18
- UniProtKB: E9QLK7 (UniProtKB/TrEMBL),   E9PZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109875   ⟸   XM_030254015
- Peptide Label: isoform X3
- UniProtKB: E9PWT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109878   ⟸   XM_030254018
- Peptide Label: isoform X8
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109876   ⟸   XM_030254016
- Peptide Label: isoform X3
- UniProtKB: E9PWT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000122021   ⟸   ENSMUST00000132925
RefSeq Acc Id: ENSMUSP00000148419   ⟸   ENSMUST00000213013
RefSeq Acc Id: ENSMUSP00000098035   ⟸   ENSMUST00000100467
RefSeq Acc Id: ENSMUSP00000091668   ⟸   ENSMUST00000094120
RefSeq Acc Id: ENSMUSP00000115917   ⟸   ENSMUST00000128550
RefSeq Acc Id: ENSMUSP00000042544   ⟸   ENSMUST00000038980
RefSeq Acc Id: XP_036020583   ⟸   XM_036164690
- Peptide Label: isoform X12
- UniProtKB: A0A1D5RLL4 (UniProtKB/TrEMBL)
Protein Domains
FAT   FATC   PI3K/PI4K catalytic

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80YV3-F1-model_v2 AlphaFold Q80YV3 1-2565 view protein structure

Promoters
RGD ID:6888724
Promoter ID:EPDNEW_M7813
Type:multiple initiation site
Name:Trrap_1
Description:Mus musculus transformation/transcription domain-associated protein, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385144,768,793 - 144,768,853EPDNEW
RGD ID:6838553
Promoter ID:MM_KWN:44804
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000041548,   OTTMUST00000041549,   OTTMUST00000041554
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365145,528,461 - 145,529,662 (+)MPROMDB
RGD ID:6838555
Promoter ID:MM_KWN:44807
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:UC009ALU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365145,564,631 - 145,565,131 (+)MPROMDB
RGD ID:6838554
Promoter ID:MM_KWN:44808
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Spleen
Transcripts:OTTMUST00000041555
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365145,580,879 - 145,581,379 (+)MPROMDB
RGD ID:6838556
Promoter ID:MM_KWN:44810
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000041557
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365145,617,791 - 145,618,291 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2153272 AgrOrtholog
Ensembl Genes ENSMUSG00000045482 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038980.13 UniProtKB/TrEMBL
  ENSMUST00000094120.9 UniProtKB/TrEMBL
  ENSMUST00000100467 ENTREZGENE
  ENSMUST00000100467.10 UniProtKB/TrEMBL
  ENSMUST00000128550.8 UniProtKB/TrEMBL
  ENSMUST00000132925 ENTREZGENE
  ENSMUST00000132925.2 UniProtKB/TrEMBL
  ENSMUST00000213013 ENTREZGENE
  ENSMUST00000213013.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/TrEMBL
  PIK-rel_kinase_FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIK_FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tra1_central UniProtKB/TrEMBL
  Tra1_ring UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100683 UniProtKB/TrEMBL
MGD MGI:2153272 ENTREZGENE
NCBI Gene 100683 ENTREZGENE
PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11139:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC UniProtKB/TrEMBL
  PI3_PI4_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tra1_central UniProtKB/TrEMBL
  Tra1_ring UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trrap PhenoGen
PROSITE FAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3_4_KINASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI3Kc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLL4 ENTREZGENE, UniProtKB/TrEMBL
  D3YY11_MOUSE UniProtKB/TrEMBL
  E9PWT1 ENTREZGENE, UniProtKB/TrEMBL
  E9PZA7 ENTREZGENE, UniProtKB/TrEMBL
  E9QLK7 ENTREZGENE, UniProtKB/TrEMBL
  F7CGG2_MOUSE UniProtKB/TrEMBL
  Q3TIP5_MOUSE UniProtKB/TrEMBL
  Q3UH32_MOUSE UniProtKB/TrEMBL
  Q80YV3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8C0Z5 UniProtKB/Swiss-Prot
  Q8K104 UniProtKB/Swiss-Prot