Txnl1 (thioredoxin-like 1) - Rat Genome Database

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Gene: Txnl1 (thioredoxin-like 1) Mus musculus
Analyze
Symbol: Txnl1
Name: thioredoxin-like 1
RGD ID: 1550199
MGI Page MGI
Description: Predicted to enable protein-disulfide reductase activity. Predicted to be located in cytoplasm. Predicted to be part of proteasome complex. Predicted to be active in cytosol. Is expressed in several structures, including adrenal gland; alimentary system; brain; genitourinary system; and immune system. Orthologous to human TXNL1 (thioredoxin like 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 32 kDa thioredoxin-related protein; 32kD; 32kDa; thioredoxin-like (32kD); thioredoxin-like protein 1; thioredoxin-related protein; TRP; TRP32; Txnl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391863,795,872 - 63,825,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1863,794,165 - 63,841,872 (-)EnsemblGRCm39 Ensembl
GRCm381863,662,801 - 63,692,359 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1863,661,094 - 63,708,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv371863,822,455 - 63,852,013 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361863,788,170 - 63,817,728 (-)NCBIMGSCv36mm8
Celera1864,929,954 - 64,959,513 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1837.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-tribromophenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
choline  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
etoposide  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
ivermectin  (ISO)
L-ethionine  (ISO)
L-methionine  (EXP)
methimazole  (ISO)
miconazole  (ISO)
microcystin RR  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenethyl caffeate  (ISO)
phenobarbital  (ISO)
phosgene  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
sulindac  (ISO)
tebuconazole  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
nucleus  (IEA)
proteasome complex  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Purification, molecular cloning, and characterization of TRP32, a novel thioredoxin-related mammalian protein of 32 kDa. Lee KK, etal., J Biol Chem 1998 Jul 24;273(30):19160-6.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16438969   PMID:18554416   PMID:19349280   PMID:21873635   PMID:24457600   PMID:25737280   PMID:26336360   PMID:32325033   PMID:32554809   PMID:36417873   PMID:36604605  


Genomics

Comparative Map Data
Txnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391863,795,872 - 63,825,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1863,794,165 - 63,841,872 (-)EnsemblGRCm39 Ensembl
GRCm381863,662,801 - 63,692,359 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1863,661,094 - 63,708,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv371863,822,455 - 63,852,013 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361863,788,170 - 63,817,728 (-)NCBIMGSCv36mm8
Celera1864,929,954 - 64,959,513 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1837.06NCBI
TXNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381856,597,209 - 56,638,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1856,597,209 - 56,651,600 (-)EnsemblGRCh38hg38GRCh38
GRCh371854,264,440 - 54,305,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361852,421,051 - 52,456,874 (-)NCBINCBI36Build 36hg18NCBI36
Build 341852,421,050 - 52,456,874NCBI
Celera1850,987,191 - 51,023,052 (-)NCBICelera
Cytogenetic Map18q21.31NCBI
HuRef1850,981,411 - 51,017,287 (-)NCBIHuRef
CHM1_11854,265,556 - 54,301,403 (-)NCBICHM1_1
T2T-CHM13v2.01856,799,245 - 56,840,564 (-)NCBIT2T-CHM13v2.0
Txnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81859,397,275 - 59,428,072 (-)NCBIGRCr8
mRatBN7.21857,125,362 - 57,155,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1857,125,369 - 57,165,266 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1859,207,168 - 59,234,005 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01859,924,212 - 59,951,049 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01857,752,119 - 57,778,980 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01859,056,454 - 59,086,278 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1859,059,375 - 59,086,256 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01858,276,626 - 58,304,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41859,823,127 - 59,849,853 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11859,896,328 - 59,923,054 (-)NCBI
Celera1855,269,930 - 55,296,882 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Txnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540241,022,771 - 41,058,727 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540241,022,771 - 41,058,731 (-)NCBIChiLan1.0ChiLan1.0
TXNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21774,135,337 - 74,184,108 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11859,822,691 - 59,863,743 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01849,988,636 - 50,024,604 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11853,322,604 - 53,358,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1853,322,604 - 53,358,137 (-)Ensemblpanpan1.1panPan2
TXNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1119,171,267 - 19,203,898 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl119,171,314 - 19,203,898 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha120,155,743 - 20,188,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0119,054,700 - 19,087,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl119,054,696 - 19,088,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1119,110,858 - 19,143,732 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0119,006,351 - 19,038,924 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0119,277,297 - 19,310,025 (+)NCBIUU_Cfam_GSD_1.0
Txnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494432,311,302 - 32,344,583 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364977,550,302 - 7,582,582 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364977,550,307 - 7,583,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1105,973,641 - 106,013,574 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11105,974,021 - 106,013,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21116,722,915 - 116,763,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TXNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11823,087,286 - 23,124,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1823,087,389 - 23,116,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660602,437,028 - 2,474,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247922,127,685 - 2,166,400 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247922,128,154 - 2,166,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Txnl1
982 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:419
Count of miRNA genes:288
Interacting mature miRNAs:340
Transcripts:ENSMUST00000025476
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse

Markers in Region
RH125726  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381863,684,923 - 63,685,172UniSTSGRCm38
MGSCv371863,844,577 - 63,844,826UniSTSGRCm37
Celera1864,952,071 - 64,952,320UniSTS
Cytogenetic Map18D3UniSTS
Whitehead/MRC_RH18814.95UniSTS
UniSTS:237822  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381863,662,690 - 63,662,779UniSTSGRCm38
MGSCv371863,822,344 - 63,822,433UniSTSGRCm37
Celera1864,929,843 - 64,929,932UniSTS
Cytogenetic Map18D3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025476   ⟹   ENSMUSP00000025476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,796,438 - 63,825,393 (-)Ensembl
GRCm38.p6 Ensembl1863,663,367 - 63,692,322 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,797,242 - 63,799,180 (-)Ensembl
GRCm38.p6 Ensembl1863,664,171 - 63,666,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,799,175 - 63,804,746 (-)Ensembl
GRCm38.p6 Ensembl1863,666,104 - 63,671,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,826,751 - 63,841,585 (-)Ensembl
GRCm38.p6 Ensembl1863,693,680 - 63,708,514 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236892   ⟹   ENSMUSP00000158344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,806,778 - 63,808,584 (-)Ensembl
GRCm38.p6 Ensembl1863,673,707 - 63,675,513 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237004   ⟹   ENSMUSP00000158375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,794,165 - 63,825,508 (-)Ensembl
GRCm38.p6 Ensembl1863,661,094 - 63,692,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237331   ⟹   ENSMUSP00000158527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,797,177 - 63,841,872 (-)Ensembl
GRCm38.p6 Ensembl1863,664,106 - 63,708,801 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238061   ⟹   ENSMUSP00000157498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,797,171 - 63,841,865 (-)Ensembl
GRCm38.p6 Ensembl1863,664,100 - 63,708,794 (-)Ensembl
RefSeq Acc Id: NM_016792   ⟹   NP_058072
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391863,795,872 - 63,825,430 (-)NCBI
GRCm381863,662,801 - 63,692,359 (-)ENTREZGENE
MGSCv371863,822,455 - 63,852,013 (-)RGD
Celera1864,929,954 - 64,959,513 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004939872
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391863,796,081 - 63,825,535 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_058072   ⟸   NM_016792
- UniProtKB: O70379 (UniProtKB/Swiss-Prot),   Q3TI92 (UniProtKB/Swiss-Prot),   Q8CDN6 (UniProtKB/Swiss-Prot),   Q3U8R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158375   ⟸   ENSMUST00000237004
RefSeq Acc Id: ENSMUSP00000158527   ⟸   ENSMUST00000237331
RefSeq Acc Id: ENSMUSP00000158344   ⟸   ENSMUST00000236892
RefSeq Acc Id: ENSMUSP00000157498   ⟸   ENSMUST00000238061
RefSeq Acc Id: ENSMUSP00000025476   ⟸   ENSMUST00000025476
Protein Domains
CRIB   PITH   Thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CDN6-F1-model_v2 AlphaFold Q8CDN6 1-289 view protein structure

Promoters
RGD ID:13677998
Promoter ID:EPDNEW_M23148
Type:initiation region
Name:Txnl1_1
Description:Mus musculus thioredoxin-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381863,692,327 - 63,692,387EPDNEW
RGD ID:6829603
Promoter ID:MM_KWN:25475
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_016792,   UC008FDY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361863,851,686 - 63,852,537 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860078 AgrOrtholog
Ensembl Genes ENSMUSG00000024583 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025476.4 UniProtKB/TrEMBL
  ENSMUST00000236892.2 UniProtKB/TrEMBL
  ENSMUST00000237004 ENTREZGENE
  ENSMUST00000237004.2 UniProtKB/Swiss-Prot
  ENSMUST00000237331.2 UniProtKB/TrEMBL
  ENSMUST00000238061.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CRIB_dom UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PITH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PITH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53382 UniProtKB/Swiss-Prot
MGD MGI:1860078 ENTREZGENE
NCBI Gene 53382 ENTREZGENE
PANTHER THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
  THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam PITH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Txnl1 PhenoGen
PROSITE CRIB UniProtKB/TrEMBL
  PITH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOREDOXIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B955_MOUSE UniProtKB/TrEMBL
  A0A494BB31_MOUSE UniProtKB/TrEMBL
  A0A494BBI1_MOUSE UniProtKB/TrEMBL
  A0A498WGD8_MOUSE UniProtKB/TrEMBL
  O70379 ENTREZGENE
  Q3TI92 ENTREZGENE
  Q3U8R9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UBF4_MOUSE UniProtKB/TrEMBL
  Q3UNH3_MOUSE UniProtKB/TrEMBL
  Q8CDN6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O70379 UniProtKB/Swiss-Prot
  Q3TI92 UniProtKB/Swiss-Prot