Or51a42 (olfactory receptor family 51 subfamily A member 42) - Rat Genome Database

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Gene: Or51a42 (olfactory receptor family 51 subfamily A member 42) Mus musculus
Analyze
No known orthologs.
Symbol: Or51a42
Name: olfactory receptor family 51 subfamily A member 42
RGD ID: 1550176
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2PBJ9-6793628-6792684; MGC123671; MOR13; MOR13-2; olfactory receptor 643; olfactory receptor MOR13-2; Olfr643
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,707,863 - 103,708,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,702,807 - 103,710,652 (-)EnsemblGRCm39 Ensembl
GRCm387104,058,656 - 104,059,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,053,600 - 104,061,445 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl7103,998,800 - 104,137,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv377111,207,170 - 111,208,114 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367103,932,477 - 103,933,421 (-)NCBIMGSCv36mm8
Celera7104,438,988 - 104,439,932 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or51a42
60 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:42
Interacting mature miRNAs:43
Transcripts:ENSMUST00000074064
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse

Markers in Region
UniSTS:485227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387104,068,085 - 104,069,029UniSTSGRCm38
MGSCv377111,216,599 - 111,217,543UniSTSGRCm37
Celera7104,448,422 - 104,449,366UniSTS
Cytogenetic Map7E3UniSTS
UniSTS:489509  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387104,058,656 - 104,059,600UniSTSGRCm38
MGSCv377111,207,170 - 111,208,114UniSTSGRCm37
Celera7104,438,988 - 104,439,932UniSTS
Cytogenetic Map7E3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000074064   ⟹   ENSMUSP00000073707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7103,702,807 - 103,710,652 (-)Ensembl
GRCm38.p6 Ensembl7104,053,600 - 104,061,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138055   ⟹   ENSMUSP00000139240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7103,648,007 - 103,786,612 (-)Ensembl
GRCm38.p6 Ensembl7103,998,800 - 104,137,405 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217217   ⟹   ENSMUSP00000150133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7103,707,863 - 103,708,807 (-)Ensembl
GRCm38.p6 Ensembl7104,058,656 - 104,059,600 (-)Ensembl
RefSeq Acc Id: NM_147077   ⟹   NP_667288
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397103,707,863 - 103,708,807 (-)NCBI
GRCm387104,058,656 - 104,059,600 (-)NCBI
MGSCv377111,207,170 - 111,208,114 (-)RGD
Celera7104,438,988 - 104,439,932 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_667288   ⟸   NM_147077
- UniProtKB: Q8VGY1 (UniProtKB/TrEMBL),   A6H8H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150133   ⟸   ENSMUST00000217217
RefSeq Acc Id: ENSMUSP00000139240   ⟸   ENSMUST00000138055
RefSeq Acc Id: ENSMUSP00000073707   ⟸   ENSMUST00000074064
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VGY1-F1-model_v2 AlphaFold Q8VGY1 1-314 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030477 AgrOrtholog
Ensembl Genes ENSMUSG00000058621
  ENSMUSG00000090219 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000109824 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074064 ENTREZGENE
  ENSMUST00000074064.5 UniProtKB/TrEMBL
  ENSMUST00000138055.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:259081 UniProtKB/TrEMBL
MGD MGI:3030477 ENTREZGENE
NCBI Gene 259081 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or51a42 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6H8H4 ENTREZGENE, UniProtKB/TrEMBL
  A6QL54_MOUSE UniProtKB/TrEMBL
  Q8VGY1 ENTREZGENE, UniProtKB/TrEMBL
  V9GXN4_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or51a42  olfactory receptor family 51 subfamily A member 42  Olfr643  olfactory receptor 643  Symbol and/or name change 5135510 APPROVED